SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2006336Fold a.118: alpha-alpha superhelix [48370] (25 superfamilies)
    multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
  4. 2007336Superfamily a.118.8: TPR-like [48452] (9 families) (S)
  5. 2007586Family a.118.8.0: automated matches [191581] (1 protein)
    not a true family
  6. 2007587Protein automated matches [191037] (11 species)
    not a true protein

Species:

  1. 2007588Bacteroides fragilis [TaxId:272559] [188861] (2 PDB entries)
    1. Domains for 3gzs:
      1. 2007591Domain d3gzsa_: 3gzs A: [177116]
        automated match to d3cgha1
        complexed with act, gol
      2. 2007592Domain d3gzsb_: 3gzs B: [177117]
        automated match to d3cgha1
        complexed with act, gol
    2. Domains for 3mx3:
      1. 2007589Domain d3mx3a_: 3mx3 A: [247839]
        automated match to d4lera_
        complexed with cl, epe, mg
      2. 2007590Domain d3mx3b_: 3mx3 B: [247840]
        automated match to d4lera_
        complexed with cl, epe, mg
  2. 2007593Bacteroides ovatus [TaxId:411476] [194986] (1 PDB entry)
  3. 2007596Bacteroides thetaiotaomicron [TaxId:226186] [228123] (2 PDB entries)
    1. Domain for 3fdh:
    2. Domains for 4mru:
      1. 2007598Domain d4mrua_: 4mru A: [228124]
        automated match to d3cgha1
        complexed with edo, mg
      2. 2007599Domain d4mrub_: 4mru B: [235680]
        automated match to d4mrua_
        complexed with edo, mg
  4. 2007600Bacteroides thetaiotaomicron [TaxId:818] [189698] (3 PDB entries)
    1. Domains for 3ehm:
      1. 2007603Domain d3ehma_: 3ehm A: [245866]
        automated match to d3gzsa_
        complexed with edo
      2. 2007604Domain d3ehmb_: 3ehm B: [245867]
        automated match to d3gzsa_
        complexed with edo
    2. Domains for 3ehn:
      1. 2007605Domain d3ehna_: 3ehn A: [245868]
        automated match to d3gzsa_
        complexed with nlc
      2. 2007606Domain d3ehnb_: 3ehn B: [245869]
        automated match to d3gzsa_
        complexed with nlc
    3. Domains for 3sgh:
      1. 2007601Domain d3sgha_: 3sgh A: [185372]
        automated match to d3cgha1
        complexed with cl
      2. 2007602Domain d3sghb_: 3sgh B: [185373]
        automated match to d3cgha1
        complexed with cl
  5. 2007607Bacteroides vulgatus [TaxId:435590] [226723] (1 PDB entry)
  6. 2007609Human (Homo sapiens) [TaxId:9606] [255451] (4 PDB entries)
    1. Domain for 2lni:
    2. Domain for 2oew:
    3. Domains for 4kbq:
      1. 2007611Domain d4kbqa_: 4kbq A: [268316]
        Other proteins in same PDB: d4kbqc1, d4kbqc2, d4kbqd1, d4kbqd2
        automated match to d2vyib_
      2. 2007612Domain d4kbqb_: 4kbq B: [268315]
        Other proteins in same PDB: d4kbqc1, d4kbqc2, d4kbqd1, d4kbqd2
        automated match to d2vyib_
    4. Domains for 5cru:
      1. 2269530Domain d5crud_: 5cru D: [312835]
        automated match to d2oewa_
      2. 2269538Domain d5crub_: 5cru B: [312843]
        automated match to d2oewa_
      3. 2269588Domain d5crua_: 5cru A: [312892]
        automated match to d2oewa_
      4. 2269634Domain d5cruc_: 5cru C: [312939]
        automated match to d2oewa_
  7. 2007614Nematode (Caenorhabditis elegans) [TaxId:6239] [226441] (1 PDB entry)
  8. 2007616Norway rat (Rattus norvegicus) [TaxId:10116] [256317] (1 PDB entry)
  9. 2007619Thale cress (Arabidopsis thaliana) [TaxId:3702] [225165] (1 PDB entry)
  10. 2007621Zebrafish (Danio rerio) [TaxId:7955] [225069] (1 PDB entry)
  11. 2286137Flavobacterium johnsoniae [TaxId:376686] [329438] (1 PDB entry)

More info for Protein automated matches from a.118.8.0: automated matches

Timeline for Protein automated matches from a.118.8.0: automated matches: