Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2189565Fold d.113: Nudix [55810] (1 superfamily)
    beta(2)-alpha-beta(3)-alpha; 3 layers: alpha/beta/alpha; mixed sheet
    contains beta-grasp motif
  4. 2189566Superfamily d.113.1: Nudix [55811] (8 families) (S)
  5. 2189861Family d.113.1.0: automated matches [191580] (1 protein)
    not a true family
  6. 2189862Protein automated matches [191036] (15 species)
    not a true protein

Species:

  1. 2189863Bacteroides fragilis [TaxId:272559] [188860] (1 PDB entry)
  2. 2189866Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [235108] (4 PDB entries)
    1. Domain for 2jvb:
    2. Domain for 4k6e:
    3. Domains for 4kg3:
      1. 2189867Domain d4kg3a_: 4kg3 A: [240421]
        automated match to d4kg3c_
        protein/RNA complex; complexed with mg; mutant
      2. 2189868Domain d4kg3b_: 4kg3 B: [240422]
        automated match to d4kg3c_
        protein/RNA complex; complexed with mg; mutant
      3. 2189869Domain d4kg3c_: 4kg3 C: [235161]
        automated match to d2a6tb1
        protein/RNA complex; complexed with mg; mutant
    4. Domains for 4kg4:
      1. 2189870Domain d4kg4a_: 4kg4 A: [235162]
        automated match to d2a6tb1
        mutant
      2. 2189871Domain d4kg4b_: 4kg4 B: [240423]
        automated match to d4kg4a_
        mutant
  3. 2189874Bartonella henselae [TaxId:283166] [225687] (1 PDB entry)
  4. 2189877Bdellovibrio bacteriovorus [TaxId:959] [225632] (4 PDB entries)
    1. Domains for 3ees:
      1. 2189878Domain d3eesa_: 3ees A: [209468]
        automated match to d3gwyb_
      2. 2189879Domain d3eesb_: 3ees B: [209469]
        automated match to d3gwyb_
    2. Domains for 3eeu:
      1. 2189880Domain d3eeua_: 3eeu A: [209470]
        automated match to d3gwyb_
        protein/RNA complex; complexed with act, cl, ho
      2. 2189881Domain d3eeub_: 3eeu B: [209471]
        automated match to d3gwyb_
        protein/RNA complex; complexed with act, cl, ho
    3. Domains for 3ef5:
      1. 2189882Domain d3ef5a_: 3ef5 A: [209482]
        automated match to d3gwyb_
        protein/RNA complex; complexed with dgt
      2. 2189883Domain d3ef5b_: 3ef5 B: [209483]
        automated match to d3gwyb_
        protein/RNA complex; complexed with dgt
    4. Domains for 3ffu:
      1. 2189884Domain d3ffua_: 3ffu A: [209890]
        automated match to d3gwyb_
        protein/RNA complex; complexed with gtp, mg
      2. 2189885Domain d3ffub_: 3ffu B: [209891]
        automated match to d3gwyb_
        protein/RNA complex; complexed with gtp, mg
  5. 2189886Burkholderia pseudomallei [TaxId:320372] [256243] (1 PDB entry)
  6. 2189889Chlamydia trachomatis [TaxId:471472] [230253] (2 PDB entries)
    1. Domain for 4ilq:
    2. Domains for 4mpo:
      1. 2189890Domain d4mpoa_: 4mpo A: [236206]
        automated match to d4ilqa_
        complexed with amp, cl, mg, po4
      2. 2189891Domain d4mpob_: 4mpo B: [236205]
        automated match to d4ilqa_
        complexed with amp, cl, mg, po4
      3. 2189892Domain d4mpoc_: 4mpo C: [236207]
        automated match to d4ilqa_
        complexed with amp, cl, mg, po4
      4. 2189893Domain d4mpod_: 4mpo D: [236208]
        automated match to d4ilqa_
        complexed with amp, cl, mg, po4
      5. 2189894Domain d4mpoe_: 4mpo E: [236209]
        automated match to d4ilqa_
        complexed with amp, cl, mg, po4
      6. 2189895Domain d4mpof_: 4mpo F: [236210]
        automated match to d4ilqa_
        complexed with amp, cl, mg, po4
      7. 2189896Domain d4mpog_: 4mpo G: [236212]
        automated match to d4ilqa_
        complexed with amp, cl, mg, po4
      8. 2189897Domain d4mpoh_: 4mpo H: [236211]
        automated match to d4ilqa_
        complexed with amp, cl, mg, po4
  7. 2189899Escherichia coli K-12 [TaxId:83333] [255588] (1 PDB entry)
  8. 2189901Escherichia coli [TaxId:405955] [188925] (4 PDB entries)
    1. Domains for 3dku:
      1. 2189902Domain d3dkua_: 3dku A: [199240]
        automated match to d3shdk_
      2. 2189903Domain d3dkub_: 3dku B: [199241]
        automated match to d3dkud_
      3. 2189904Domain d3dkuc_: 3dku C: [199242]
        automated match to d3shdk_
      4. 2189905Domain d3dkud_: 3dku D: [174044]
        automated match to d2b0va1
      5. 2189906Domain d3dkue_: 3dku E: [199243]
        automated match to d3shdk_
      6. 2189907Domain d3dkuf_: 3dku F: [199244]
        automated match to d3shdk_
      7. 2189908Domain d3dkug_: 3dku G: [199245]
        automated match to d3shdk_
      8. 2189909Domain d3dkuh_: 3dku H: [199246]
        automated match to d3dkud_
    2. Domains for 3shd:
      1. 2189910Domain d3shda_: 3shd A: [200659]
        automated match to d3shdk_
        complexed with mn, so4
      2. 2189911Domain d3shdb_: 3shd B: [200660]
        automated match to d3shdk_
        complexed with mn, so4
      3. 2189912Domain d3shdc_: 3shd C: [200661]
        automated match to d3shdk_
        complexed with mn, so4
      4. 2189913Domain d3shdd_: 3shd D: [200662]
        automated match to d3shdk_
        complexed with mn, so4
      5. 2189914Domain d3shde_: 3shd E: [200663]
        automated match to d3shdk_
        complexed with mn, so4
      6. 2189915Domain d3shdf_: 3shd F: [200664]
        automated match to d3shdk_
        complexed with mn, so4
      7. 2189916Domain d3shdg_: 3shd G: [200665]
        automated match to d3shdk_
        complexed with mn, so4
      8. 2189917Domain d3shdh_: 3shd H: [195041]
        automated match to d3dkud_
        complexed with mn, so4
      9. 2189918Domain d3shdi_: 3shd I: [195040]
        automated match to d3dkud_
        complexed with mn, so4
      10. 2189919Domain d3shdj_: 3shd J: [195039]
        automated match to d3dkud_
        complexed with mn, so4
      11. 2189920Domain d3shdk_: 3shd K: [195038]
        automated match to d3dkud_
        complexed with mn, so4
      12. 2189921Domain d3shdl_: 3shd L: [200666]
        automated match to d3shdk_
        complexed with mn, so4
    3. Domains for 4nfw:
      1. 2189922Domain d4nfwa_: 4nfw A: [257144]
        automated match to d3dkua_
        complexed with mn, so4
      2. 2189923Domain d4nfwb_: 4nfw B: [263131]
        automated match to d3dkua_
        complexed with mn, so4
      3. 2189924Domain d4nfwc_: 4nfw C: [263132]
        automated match to d3dkua_
        complexed with mn, so4
      4. 2189925Domain d4nfwd_: 4nfw D: [263133]
        automated match to d3dkua_
        complexed with mn, so4
      5. 2189926Domain d4nfwe_: 4nfw E: [263134]
        automated match to d3dkua_
        complexed with mn, so4
      6. 2189927Domain d4nfwf_: 4nfw F: [263135]
        automated match to d3dkua_
        complexed with mn, so4
      7. 2189928Domain d4nfwg_: 4nfw G: [263136]
        automated match to d3dkua_
        complexed with mn, so4
      8. 2189929Domain d4nfwh_: 4nfw H: [263137]
        automated match to d3dkua_
        complexed with mn, so4
      9. 2189930Domain d4nfwi_: 4nfw I: [263138]
        automated match to d3dkua_
        complexed with mn, so4
      10. 2189931Domain d4nfwj_: 4nfw J: [263139]
        automated match to d3dkua_
        complexed with mn, so4
      11. 2189932Domain d4nfwk_: 4nfw K: [263140]
        automated match to d3dkua_
        complexed with mn, so4
      12. 2189933Domain d4nfwl_: 4nfw L: [263141]
        automated match to d3dkua_
        complexed with mn, so4
    4. Domains for 4nfx:
      1. 2189934Domain d4nfxa_: 4nfx A: [266920]
        automated match to d3dkua_
      2. 2189935Domain d4nfxb_: 4nfx B: [266921]
        automated match to d3dkua_
      3. 2189936Domain d4nfxc_: 4nfx C: [266922]
        automated match to d3dkua_
      4. 2189937Domain d4nfxd_: 4nfx D: [266923]
        automated match to d3dkua_
      5. 2189938Domain d4nfxe_: 4nfx E: [266924]
        automated match to d3dkua_
      6. 2189939Domain d4nfxf_: 4nfx F: [266925]
        automated match to d3dkua_
      7. 2189940Domain d4nfxg_: 4nfx G: [266926]
        automated match to d3dkua_
      8. 2189941Domain d4nfxh_: 4nfx H: [266927]
        automated match to d3dkua_
  9. 2189942Human (Homo sapiens) [TaxId:9606] [225626] (4 PDB entries)
    1. Domain for 3gg6:
    2. Domain for 3kvh:
    3. Domain for 4hvy:
    4. Domain for 5mp0:
  10. 2189946Rhodospirillum rubrum [TaxId:269796] [189854] (1 PDB entry)
  11. 2189949Vibrio cholerae [TaxId:666] [270713] (1 PDB entry)
  12. 2269414Bdellovibrio bacteriovorus [TaxId:264462] [312720] (3 PDB entries)
    1. Domains for 5c7q:
      1. 2269415Domain d5c7qb_: 5c7q B: [312721]
        automated match to d1vhzb_
        complexed with gol, peg, pg0, pge, so4
      2. 2269485Domain d5c7qa_: 5c7q A: [312791]
        automated match to d1vhzb_
        complexed with gol, peg, pg0, pge, so4
    2. Domains for 5c7t:
      1. 2269424Domain d5c7ta_: 5c7t A: [312730]
        automated match to d1vhzb_
        complexed with apr, gol, peg, pg0, pge, so4
      2. 2269452Domain d5c7tb_: 5c7t B: [312758]
        automated match to d1vhzb_
        complexed with apr, gol, peg, pg0, pge, so4
    3. Domains for 5c8l:
      1. 2269428Domain d5c8lb_: 5c8l B: [312734]
        automated match to d1vhzb_
        complexed with glc, gol, peg, so4
      2. 2269429Domain d5c8la_: 5c8l A: [312735]
        automated match to d1vhzb_
        complexed with glc, gol, peg, so4
  13. 2269440Plasmodium falciparum [TaxId:36329] [312746] (2 PDB entries)
    1. Domains for 5cfi:
      1. 2269441Domain d5cfid_: 5cfi D: [312747]
        automated match to d1kt9a_
      2. 2269488Domain d5cfic_: 5cfi C: [312794]
        automated match to d1kt9a_
      3. 2269829Domain d5cfia_: 5cfi A: [313134]
        automated match to d1kt9a_
      4. 2269857Domain d5cfib_: 5cfi B: [313162]
        automated match to d1kt9a_
    2. Domain for 5cfj:
  14. 2272880Mus musculus [TaxId:10090] [316181] (1 PDB entry)
  15. 2286964Staphylococcus aureus [TaxId:548470] [330265] (1 PDB entry)

More info for Protein automated matches from d.113.1.0: automated matches

Timeline for Protein automated matches from d.113.1.0: automated matches: