Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1755445Class b: All beta proteins [48724] (176 folds)
  3. 1783288Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 1785119Superfamily b.34.13: Chromo domain-like [54160] (4 families) (S)
    SH3-like barrel is capped by a C-terminal helix
  5. 1785158Family b.34.13.2: Chromo domain [54165] (8 proteins)
    lacks the SH3-like barrel first strand that can be complemented by bound peptide ligand; in shadow chromo domain the corresponding site is altered by insertion; similarity to the IL8-like fold
  6. 1785235Protein automated matches [191035] (3 species)
    not a true protein

Species:

  1. 1785236Arabidopsis thaliana [TaxId:3702] [279724] (2 PDB entries)
    1. Domain for 2n88:
    2. Domain for 5e4x:
  2. 1785239Human (Homo sapiens) [TaxId:9606] [188859] (13 PDB entries)
    1. Domain for 2d9u:
    2. Domain for 2k28:
    3. Domain for 2mj8:
    4. Domain for 3gv6:
    5. Domains for 3h91:
      1. 1785240Domain d3h91a_: 3h91 A: [177326]
        automated match to d2dnva1
        protein/DNA complex
      2. 1785241Domain d3h91b_: 3h91 B: [177327]
        automated match to d2dnva1
        protein/DNA complex
    6. Domains for 3i3c:
      1. 1785256Domain d3i3ca_: 3i3c A: [178043]
        automated match to d1s4za_
        complexed with na
      2. 1785257Domain d3i3cb_: 3i3c B: [178044]
        automated match to d1s4za_
        complexed with na
      3. 1785258Domain d3i3cc_: 3i3c C: [178045]
        automated match to d1s4za_
        complexed with na
      4. 1785259Domain d3i3cd_: 3i3c D: [178046]
        automated match to d1s4za_
        complexed with na
    7. Domain for 3i8z:
    8. Domains for 3i90:
      1. 1785254Domain d3i90a_: 3i90 A: [178151]
        automated match to d2dnva1
      2. 1785255Domain d3i90b_: 3i90 B: [178152]
        automated match to d2dnva1
    9. Domains for 3i91:
      1. 1785243Domain d3i91a_: 3i91 A: [178153]
        automated match to d2dnva1
      2. 1785244Domain d3i91b_: 3i91 B: [178154]
        automated match to d2dnva1
    10. Domains for 3kup:
      1. 1785247Domain d3kupa_: 3kup A: [179720]
        automated match to d1dz1a_
        complexed with unx
      2. 1785248Domain d3kupb_: 3kup B: [179721]
        automated match to d1dz1a_
        complexed with unx
      3. 1785249Domain d3kupc_: 3kup C: [179722]
        automated match to d1dz1a_
        complexed with unx
      4. 1785250Domain d3kupd_: 3kup D: [179723]
        automated match to d1dz1a_
        complexed with unx
    11. Domain for 3tzd:
    12. Domain for 4hae:
    13. Domains for 5afw:
      1. 1785251Domain d5afwa1: 5afw A:270-362 [280235]
        automated match to d2b2yb2
        complexed with cl, edo
      2. 1785252Domain d5afwa2: 5afw A:374-443 [280238]
        automated match to d2b2ta2
        complexed with cl, edo
  3. 1785263Mouse (Mus musculus) [TaxId:10090] [255382] (3 PDB entries)
    1. Domain for 2kvm:
    2. Domains for 4x3t:
      1. 1785266Domain d4x3ta_: 4x3t A: [270093]
        automated match to d2kvma_
        complexed with 45e, edo, zn
      2. 1785267Domain d4x3tb_: 4x3t B: [270095]
        automated match to d2kvma_
        complexed with 45e, edo, zn
      3. 1785268Domain d4x3tc_: 4x3t C: [270101]
        automated match to d2kvma_
        complexed with 45e, edo, zn
      4. 1785269Domain d4x3td_: 4x3t D: [270097]
        automated match to d2kvma_
        complexed with 45e, edo, zn
      5. 1785270Domain d4x3te_: 4x3t E: [270100]
        automated match to d2kvma_
        complexed with 45e, edo, zn
      6. 1785271Domain d4x3tf_: 4x3t F: [270102]
        automated match to d2kvma_
        complexed with 45e, edo, zn
    3. Domains for 4x3u:
      1. 1785264Domain d4x3ua_: 4x3u A: [270096]
        automated match to d2kvma_
        complexed with svr
      2. 1785265Domain d4x3ub_: 4x3u B: [270094]
        automated match to d2kvma_
        complexed with svr

More info for Protein automated matches from b.34.13.2: Chromo domain

Timeline for Protein automated matches from b.34.13.2: Chromo domain: