SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)
Fold a.60: SAM domain-like [47768] (17 superfamilies)
4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
Superfamily a.60.3: C-terminal domain of RNA polymerase alpha subunit [47789] (1 family)
contains one classic and one pseudo HhH motifs
Family a.60.3.1: C-terminal domain of RNA polymerase alpha subunit [47790] (2 proteins)
Protein automated matches [191020] (3 species)
not a true protein

Species:

Bacillus subtilis [TaxId:1423] [188809] (2 PDB entries)
1. Domain for 3gfk:
  - Domain d3gfkb1: 3gfk B:240-311 [176587]
    Other proteins in same PDB: d3gfka_, d3gfkb2
    automated match to d1z3eb1
    protein/DNA complex; protein/RNA complex
2. Domain for 3ihq:
  - Domain d3ihqb_: 3ihq B: [178327]
    Other proteins in same PDB: d3ihqa_
    automated match to d1z3eb1
    protein/DNA complex; protein/RNA complex; complexed with imd
Escherichia coli [311177] (1 PDB entry)
- Domain for 1ti9:
  - Domain d1ti9d_: 1ti9 D: [303092]
    automated match to d3k4ga_
    protein/DNA complex; protein/RNA complex
Escherichia coli K-12 [TaxId:83333] [189388] (2 PDB entries)
1. Domains for 3k4g:
  1. Domain d3k4ga_: 3k4g A: [179067]
    automated match to d1cooa_
    complexed with na
  2. Domain d3k4gb_: 3k4g B: [179068]
    automated match to d1cooa_
    complexed with na
  3. Domain d3k4gc_: 3k4g C: [179069]
    automated match to d1cooa_
    complexed with na
  4. Domain d3k4gd_: 3k4g D: [179070]
    automated match to d1cooa_
    complexed with na
  5. Domain d3k4ge_: 3k4g E: [179071]
    automated match to d1cooa_
    complexed with na
  6. Domain d3k4gf_: 3k4g F: [179072]
    automated match to d1cooa_
    complexed with na
  7. Domain d3k4gg_: 3k4g G: [179073]
    automated match to d1cooa_
    complexed with na
  8. Domain d3k4gh_: 3k4g H: [179074]
    automated match to d1cooa_
    complexed with na
2. Domains for 3n4m:
  1. Domain d3n4mb_: 3n4m B: [181899]
    Other proteins in same PDB: d3n4ma1, d3n4ma2
    automated match to d1cooa_
    protein/DNA complex; protein/RNA complex; complexed with cmp, peg
  2. Domain d3n4mc_: 3n4m C: [181900]
    Other proteins in same PDB: d3n4ma1, d3n4ma2
    automated match to d1cooa_
    protein/DNA complex; protein/RNA complex; complexed with cmp, peg

More info for Protein automated matches from a.60.3.1: C-terminal domain of RNA polymerase alpha subunit

Timeline for Protein automated matches from a.60.3.1: C-terminal domain of RNA polymerase alpha subunit:

Protein automated matches from a.60.3.1: C-terminal domain of RNA polymerase alpha subunit first appeared in SCOPe 2.01
Protein automated matches from a.60.3.1: C-terminal domain of RNA polymerase alpha subunit appears in SCOPe 2.07