SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2067964Fold b.74: Carbonic anhydrase [51068] (1 superfamily)
    single sheet; 10 strands
  4. 2067965Superfamily b.74.1: Carbonic anhydrase [51069] (2 families) (S)
  5. 2068693Family b.74.1.0: automated matches [191576] (1 protein)
    not a true family
  6. 2068694Protein automated matches [191011] (13 species)
    not a true protein

Species:

  1. 2068695Dioscorea japonica [TaxId:4673] [271037] (2 PDB entries)
    1. Domains for 4twl:
      1. 2068696Domain d4twla_: 4twl A: [271038]
        automated match to d3rg4a_
        complexed with asc, so4
      2. 2068697Domain d4twlb_: 4twl B: [271042]
        automated match to d3rg4a_
        complexed with asc, so4
    2. Domains for 4twm:
      1. 2068698Domain d4twma_: 4twm A: [271039]
        automated match to d3rg4a_
        complexed with so4
      2. 2068699Domain d4twmb_: 4twm B: [271041]
        automated match to d3rg4a_
        complexed with so4
  2. 2068700Dunaliella salina [TaxId:3046] [254971] (1 PDB entry)
  3. 2068703Fungus (Aspergillus oryzae) [TaxId:5062] [226089] (1 PDB entry)
  4. 2068706Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [270125] (2 PDB entries)
    1. Domains for 4xiw:
      1. 2068707Domain d4xiwa_: 4xiw A: [270148]
        automated match to d3mdza_
        complexed with 2hp, azm, zn
      2. 2068708Domain d4xiwb_: 4xiw B: [270145]
        automated match to d3mdza_
        complexed with 2hp, azm, zn
      3. 2068709Domain d4xiwc_: 4xiw C: [270140]
        automated match to d3mdza_
        complexed with 2hp, azm, zn
      4. 2068710Domain d4xiwd_: 4xiw D: [270146]
        automated match to d3mdza_
        complexed with 2hp, azm, zn
      5. 2068711Domain d4xiwe_: 4xiw E: [270143]
        automated match to d3mdza_
        complexed with 2hp, azm, zn
      6. 2068712Domain d4xiwf_: 4xiw F: [270141]
        automated match to d3mdza_
        complexed with 2hp, azm, zn
      7. 2068713Domain d4xiwg_: 4xiw G: [270142]
        automated match to d3mdza_
        complexed with 2hp, azm, zn
      8. 2068714Domain d4xiwh_: 4xiw H: [270139]
        automated match to d3mdza_
        complexed with 2hp, azm, zn
    2. Domains for 4xix:
      1. 2068715Domain d4xixa_: 4xix A: [270130]
        automated match to d3mdza_
        complexed with 2hp, zn
      2. 2068716Domain d4xixb_: 4xix B: [270128]
        automated match to d3mdza_
        complexed with 2hp, zn
      3. 2068717Domain d4xixc_: 4xix C: [270127]
        automated match to d3mdza_
        complexed with 2hp, zn
      4. 2068718Domain d4xixd_: 4xix D: [270126]
        automated match to d3mdza_
        complexed with 2hp, zn
      5. 2068719Domain d4xixe_: 4xix E: [270132]
        automated match to d3mdza_
        complexed with 2hp, zn
      6. 2068720Domain d4xixf_: 4xix F: [270137]
        automated match to d3mdza_
        complexed with 2hp, zn
      7. 2068721Domain d4xixg_: 4xix G: [270144]
        automated match to d3mdza_
        complexed with 2hp, zn
      8. 2068722Domain d4xixh_: 4xix H: [270138]
        automated match to d3mdza_
        complexed with 2hp, zn
  5. 2068723Helicobacter pylori [TaxId:563041] [275714] (1 PDB entry)
  6. 2068726Helicobacter pylori [TaxId:85962] [274562] (2 PDB entries)
    1. Domains for 4ygf:
      1. 2068727Domain d4ygfa_: 4ygf A: [274568]
        automated match to d1koqa_
        complexed with azm, cl, gol, zn
      2. 2068728Domain d4ygfb_: 4ygf B: [274567]
        automated match to d1koqa_
        complexed with azm, cl, gol, zn
      3. 2068729Domain d4ygfc_: 4ygf C: [274564]
        automated match to d1koqa_
        complexed with azm, cl, gol, zn
      4. 2068730Domain d4ygfd_: 4ygf D: [274569]
        automated match to d1koqa_
        complexed with azm, cl, gol, zn
      5. 2068731Domain d4ygfe_: 4ygf E: [274565]
        automated match to d1koqa_
        complexed with azm, cl, gol, zn
      6. 2068732Domain d4ygff_: 4ygf F: [274566]
        automated match to d1koqa_
        complexed with azm, cl, gol, zn
      7. 2068733Domain d4ygfg_: 4ygf G: [274572]
        automated match to d1koqa_
        complexed with azm, cl, gol, zn
      8. 2068734Domain d4ygfh_: 4ygf H: [274570]
        automated match to d1koqa_
        complexed with azm, cl, gol, zn
    2. Domains for 4yha:
      1. 2068735Domain d4yhaa_: 4yha A: [274571]
        automated match to d1koqa_
        complexed with cl, gol, mzm, zn
      2. 2068736Domain d4yhab_: 4yha B: [274574]
        automated match to d1koqa_
        complexed with cl, gol, mzm, zn
      3. 2068737Domain d4yhac_: 4yha C: [274573]
        automated match to d1koqa_
        complexed with cl, gol, mzm, zn
      4. 2068738Domain d4yhad_: 4yha D: [274575]
        automated match to d1koqa_
        complexed with cl, gol, mzm, zn
      5. 2068739Domain d4yhae_: 4yha E: [274576]
        automated match to d1koqa_
        complexed with cl, gol, mzm, zn
      6. 2068740Domain d4yhaf_: 4yha F: [274577]
        automated match to d1koqa_
        complexed with cl, gol, mzm, zn
      7. 2068741Domain d4yhag_: 4yha G: [274578]
        automated match to d1koqa_
        complexed with cl, gol, mzm, zn
      8. 2068742Domain d4yhah_: 4yha H: [274579]
        automated match to d1koqa_
        complexed with cl, gol, mzm, zn
  7. 2068743Human (Homo sapiens) [TaxId:9606] [188766] (12 PDB entries)
    1. Domains for 3fe4:
      1. 2068751Domain d3fe4a_: 3fe4 A: [175720]
        automated match to d1rj5b_
        complexed with gol, mg
      2. 2068752Domain d3fe4b_: 3fe4 B: [175721]
        automated match to d1rj5b_
        complexed with gol, mg
    2. Domains for 3iai:
      1. 2068747Domain d3iaia1: 3iai A:0A-261 [178211]
        Other proteins in same PDB: d3iaia2
        automated match to d1rj5a_
        complexed with azm, gol, po4, trs, zn
      2. 2068748Domain d3iaib_: 3iai B: [178212]
        Other proteins in same PDB: d3iaia2
        automated match to d1rj5a_
        complexed with azm, gol, po4, trs, zn
      3. 2068749Domain d3iaic_: 3iai C: [178213]
        Other proteins in same PDB: d3iaia2
        automated match to d1rj5a_
        complexed with azm, gol, po4, trs, zn
      4. 2068750Domain d3iaid_: 3iai D: [178214]
        Other proteins in same PDB: d3iaia2
        automated match to d1rj5a_
        complexed with azm, gol, po4, trs, zn
    3. Domains for 3jxf:
      1. 2068745Domain d3jxfa_: 3jxf A: [178906]
        Other proteins in same PDB: d3jxfb2
        automated match to d1jcza_
      2. 2068746Domain d3jxfb1: 3jxf B:34-301 [178907]
        Other proteins in same PDB: d3jxfb2
        automated match to d1jcza_
    4. Domain for 3jxh:
    5. Domains for 3s97:
      1. 2068759Domain d3s97a_: 3s97 A: [185321]
        Other proteins in same PDB: d3s97c1, d3s97d1, d3s97d2
        automated match to d1jcza_
        complexed with nag
      2. 2068760Domain d3s97b_: 3s97 B: [185322]
        Other proteins in same PDB: d3s97c1, d3s97d1, d3s97d2
        automated match to d1jcza_
        complexed with nag
    6. Domain for 4lu3:
    7. Domain for 5cjf:
    8. Domains for 5dvx:
      1. 2277010Domain d5dvxa_: 5dvx A: [320311]
        automated match to d3iaib_
        complexed with cl, gol, trs, zn
      2. 2277092Domain d5dvxb_: 5dvx B: [320393]
        automated match to d3iaib_
        complexed with cl, gol, trs, zn
    9. Domains for 5e5r:
      1. 2278591Domain d5e5rc_: 5e5r C: [321892]
        Other proteins in same PDB: d5e5rb1, d5e5rb2, d5e5rd1, d5e5rd2
        automated match to d3kldb_
        complexed with fmt, mli
      2. 2278612Domain d5e5ra_: 5e5r A: [321913]
        Other proteins in same PDB: d5e5rb1, d5e5rb2, d5e5rd1, d5e5rd2
        automated match to d3kldb_
        complexed with fmt, mli
    10. Domains for 5fl4:
      1. 2068754Domain d5fl4a_: 5fl4 A: [279321]
        automated match to d3iaia_
        complexed with 9fk, acy, gol, zn
      2. 2068755Domain d5fl4b_: 5fl4 B: [279317]
        automated match to d3iaia_
        complexed with 9fk, acy, gol, zn
      3. 2068756Domain d5fl4c_: 5fl4 C: [279324]
        automated match to d3iaia_
        complexed with 9fk, acy, gol, zn
      4. 2068757Domain d5fl4d_: 5fl4 D: [279320]
        automated match to d3iaia_
        complexed with 9fk, acy, gol, zn
    11. Domains for 5fl5:
      1. 2068765Domain d5fl5a_: 5fl5 A: [279318]
        automated match to d3iaia_
        complexed with 82e, gol, so4, trs, zn
      2. 2068766Domain d5fl5b_: 5fl5 B: [279322]
        automated match to d3iaia_
        complexed with 82e, gol, so4, trs, zn
      3. 2068767Domain d5fl5c_: 5fl5 C: [279328]
        automated match to d3iaia_
        complexed with 82e, gol, so4, trs, zn
      4. 2068768Domain d5fl5d_: 5fl5 D: [279327]
        automated match to d3iaia_
        complexed with 82e, gol, so4, trs, zn
    12. Domains for 5fl6:
      1. 2068761Domain d5fl6a_: 5fl6 A: [279325]
        automated match to d3iaia_
        complexed with acy, gol, y0r, zn
      2. 2068762Domain d5fl6b_: 5fl6 B: [279323]
        automated match to d3iaia_
        complexed with acy, gol, y0r, zn
      3. 2068763Domain d5fl6c_: 5fl6 C: [279326]
        automated match to d3iaia_
        complexed with acy, gol, y0r, zn
      4. 2068764Domain d5fl6d_: 5fl6 D: [279319]
        automated match to d3iaia_
        complexed with acy, gol, y0r, zn
  8. 2068769Mouse (Mus musculus) [TaxId:10090] [189158] (3 PDB entries)
    1. Domains for 3jxg:
      1. 2068770Domain d3jxga_: 3jxg A: [178908]
        automated match to d1rj5a_
      2. 2068771Domain d3jxgb_: 3jxg B: [178909]
        automated match to d1rj5a_
      3. 2068772Domain d3jxgc_: 3jxg C: [178910]
        automated match to d1rj5a_
      4. 2068773Domain d3jxgd_: 3jxg D: [178911]
        automated match to d1rj5a_
    2. Domain for 3kld:
    3. Domains for 5e5u:
      1. 2278644Domain d5e5uc_: 5e5u C: [321945]
        Other proteins in same PDB: d5e5ub1, d5e5ub2, d5e5ub3, d5e5ud1, d5e5ud2, d5e5ud3
        automated match to d3kldb_
        complexed with 1ps, acy, fmt, mli, mlt
      2. 2278673Domain d5e5ua_: 5e5u A: [321974]
        Other proteins in same PDB: d5e5ub1, d5e5ub2, d5e5ub3, d5e5ud1, d5e5ud2, d5e5ud3
        automated match to d3kldb_
        complexed with 1ps, acy, fmt, mli, mlt
  9. 2068775Thermovibrio ammonificans [TaxId:228745] [259326] (2 PDB entries)
    1. Domains for 4c3t:
      1. 2068782Domain d4c3ta_: 4c3t A: [259330]
        automated match to d1koqa_
        complexed with cl, zn
      2. 2068783Domain d4c3tb_: 4c3t B: [259329]
        automated match to d1koqa_
        complexed with cl, zn
    2. Domains for 4uov:
      1. 2068776Domain d4uova_: 4uov A: [267460]
        automated match to d4c3ta_
        complexed with azm, b3p, cl, pe3, peg, pg5, pge, so4, tla, zn
      2. 2068777Domain d4uovb_: 4uov B: [267461]
        automated match to d4c3ta_
        complexed with azm, b3p, cl, pe3, peg, pg5, pge, so4, tla, zn
      3. 2068778Domain d4uovc_: 4uov C: [267462]
        automated match to d4c3ta_
        complexed with azm, b3p, cl, pe3, peg, pg5, pge, so4, tla, zn
      4. 2068779Domain d4uovd_: 4uov D: [267463]
        automated match to d4c3ta_
        complexed with azm, b3p, cl, pe3, peg, pg5, pge, so4, tla, zn
      5. 2068780Domain d4uove_: 4uov E: [267464]
        automated match to d4c3ta_
        complexed with azm, b3p, cl, pe3, peg, pg5, pge, so4, tla, zn
      6. 2068781Domain d4uovf_: 4uov F: [267465]
        automated match to d4c3ta_
        complexed with azm, b3p, cl, pe3, peg, pg5, pge, so4, tla, zn
  10. 2068784Thermovibrio ammonificans [TaxId:648996] [260302] (1 PDB entry)
  11. 2068787Thiomicrospira crunogena [TaxId:317025] [275505] (1 PDB entry)
  12. 2068792Vaccinia virus [TaxId:10245] [256246] (2 PDB entries)
    1. Domain for 4e9o:
    2. Domains for 4etq:
      1. 2068794Domain d4etqc_: 4etq C: [240120]
        Other proteins in same PDB: d4etqb1, d4etqb2, d4etql1, d4etql2
        automated match to d1dmya_
        complexed with cl, edo, gol, scn
      2. 2068795Domain d4etqx_: 4etq X: [240121]
        Other proteins in same PDB: d4etqb1, d4etqb2, d4etql1, d4etql2
        automated match to d1dmya_
        complexed with cl, edo, gol, scn
  13. 2283744Photobacterium profundum [TaxId:298386] [327045] (1 PDB entry)

More info for Protein automated matches from b.74.1.0: automated matches

Timeline for Protein automated matches from b.74.1.0: automated matches: