SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1998615Fold a.60: SAM domain-like [47768] (16 superfamilies)
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. 1999483Superfamily a.60.12: PsbU/PolX domain-like [81585] (3 families) (S)
    contains one classic and one pseudo HhH motifs
  5. 1999718Family a.60.12.2: PsbU-like [158539] (2 protein domains)
    Pfam PF06514
  6. 1999729Protein automated matches [191005] (3 species)
    not a true protein

Species:

  1. 1999730Thermosynechococcus elongatus [TaxId:197221] [260559] (4 PDB entries)
    1. Domain for 4pj0:
    2. Domain for 5kaf:
    3. Domain for 5kai:
    4. Domain for 5tis:
  2. 1999732Thermosynechococcus elongatus [TaxId:32046] [188750] (2 PDB entries)
    1. Domain for 3bz1:
    2. Domain for 3bz2:
  3. 2286095Thermosynechococcus vulcanus [TaxId:32053] [329396] (2 PDB entries)
    1. Domain for 5b66:
    2. Domain for 5ws6:

More info for Protein automated matches from a.60.12.2: PsbU-like

Timeline for Protein automated matches from a.60.12.2: PsbU-like: