SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2180205Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
    core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
  4. 2180995Superfamily d.79.5: IpsF-like [69765] (2 families) (S)
    forms trimers with three closely packed beta-sheets; possible link between the YjgF-like (d.79.1) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)
  5. 2180996Family d.79.5.1: IpsF-like [69766] (3 protein domains)
    automatically mapped to Pfam PF02542
  6. 2181094Protein automated matches [190985] (4 species)
    not a true protein

Species:

  1. 2181095Burkholderia pseudomallei [TaxId:28450] [189021] (2 PDB entries)
    1. Domains for 3ike:
      1. 2181099Domain d3ikea_: 3ike A: [178369]
        automated match to d1jn1a_
        complexed with cl, cyt, mg, zn
      2. 2181100Domain d3ikeb_: 3ike B: [178370]
        automated match to d1jn1a_
        complexed with cl, cyt, mg, zn
      3. 2181101Domain d3ikec_: 3ike C: [178371]
        automated match to d1jn1a_
        complexed with cl, cyt, mg, zn
    2. Domains for 3ikf:
      1. 2181096Domain d3ikfa_: 3ikf A: [178372]
        automated match to d1jn1a_
        complexed with 717, act, cl, k, zn
      2. 2181097Domain d3ikfb_: 3ikf B: [178373]
        automated match to d1jn1a_
        complexed with 717, act, cl, k, zn
      3. 2181098Domain d3ikfc_: 3ikf C: [178374]
        automated match to d1jn1a_
        complexed with 717, act, cl, k, zn
  2. 2181102Salmonella typhimurium [TaxId:90371] [189751] (2 PDB entries)
    1. Domains for 3ghz:
      1. 2181103Domain d3ghza1: 3ghz A:1-156 [176656]
        Other proteins in same PDB: d3ghza2, d3ghzb2, d3ghzc2
        automated match to d1h48c_
        complexed with gol, mg, pop
      2. 2181104Domain d3ghzb1: 3ghz B:1-156 [176657]
        Other proteins in same PDB: d3ghza2, d3ghzb2, d3ghzc2
        automated match to d1h48c_
        complexed with gol, mg, pop
      3. 2181105Domain d3ghzc1: 3ghz C:1-156 [176658]
        Other proteins in same PDB: d3ghza2, d3ghzb2, d3ghzc2
        automated match to d1h48c_
        complexed with gol, mg, pop
    2. Domains for 3t80:
      1. 2181106Domain d3t80a1: 3t80 A:1-156 [185679]
        Other proteins in same PDB: d3t80a2, d3t80b2, d3t80c2, d3t80d2, d3t80e2, d3t80f2
        automated match to d1h48c_
        complexed with ctn, edo, mg, pop, zn
      2. 2181107Domain d3t80b1: 3t80 B:1-156 [185680]
        Other proteins in same PDB: d3t80a2, d3t80b2, d3t80c2, d3t80d2, d3t80e2, d3t80f2
        automated match to d1h48c_
        complexed with ctn, edo, mg, pop, zn
      3. 2181108Domain d3t80c1: 3t80 C:1-156 [185681]
        Other proteins in same PDB: d3t80a2, d3t80b2, d3t80c2, d3t80d2, d3t80e2, d3t80f2
        automated match to d1h48c_
        complexed with ctn, edo, mg, pop, zn
      4. 2181109Domain d3t80d1: 3t80 D:1-156 [185682]
        Other proteins in same PDB: d3t80a2, d3t80b2, d3t80c2, d3t80d2, d3t80e2, d3t80f2
        automated match to d1h48c_
        complexed with ctn, edo, mg, pop, zn
      5. 2181110Domain d3t80e1: 3t80 E:1-156 [185683]
        Other proteins in same PDB: d3t80a2, d3t80b2, d3t80c2, d3t80d2, d3t80e2, d3t80f2
        automated match to d1h48c_
        complexed with ctn, edo, mg, pop, zn
      6. 2181111Domain d3t80f1: 3t80 F:1-156 [185684]
        Other proteins in same PDB: d3t80a2, d3t80b2, d3t80c2, d3t80d2, d3t80e2, d3t80f2
        automated match to d1h48c_
        complexed with ctn, edo, mg, pop, zn
  3. 2181112Yersinia pestis [TaxId:214092] [188680] (2 PDB entries)
    1. Domain for 3f6m:
    2. Domain for 3fpi:
  4. 2289034Bacillus subtilis [TaxId:224308] [332335] (2 PDB entries)
    1. Domains for 5iwx:
      1. 2289093Domain d5iwxf_: 5iwx F: [332394]
        automated match to d1t0aa_
        complexed with mg
      2. 2289147Domain d5iwxa_: 5iwx A: [332448]
        automated match to d1t0aa_
        complexed with mg
      3. 2289149Domain d5iwxc_: 5iwx C: [332450]
        automated match to d1t0aa_
        complexed with mg
      4. 2289161Domain d5iwxd_: 5iwx D: [332462]
        automated match to d1t0aa_
        complexed with mg
      5. 2289164Domain d5iwxe_: 5iwx E: [332465]
        automated match to d1t0aa_
        complexed with mg
      6. 2289184Domain d5iwxb_: 5iwx B: [332485]
        automated match to d1t0aa_
        complexed with mg
    2. Domains for 5iwy:
      1. 2289035Domain d5iwyf_: 5iwy F: [332336]
        automated match to d1t0aa_
        complexed with c5p, mg
      2. 2289064Domain d5iwye_: 5iwy E: [332365]
        automated match to d1t0aa_
        complexed with c5p, mg
      3. 2289066Domain d5iwya_: 5iwy A: [332367]
        automated match to d1t0aa_
        complexed with c5p, mg
      4. 2289143Domain d5iwyc_: 5iwy C: [332444]
        automated match to d1t0aa_
        complexed with c5p, mg
      5. 2289183Domain d5iwyb_: 5iwy B: [332484]
        automated match to d1t0aa_
        complexed with c5p, mg
      6. 2289217Domain d5iwyd_: 5iwy D: [332518]
        automated match to d1t0aa_
        complexed with c5p, mg

More info for Protein automated matches from d.79.5.1: IpsF-like

Timeline for Protein automated matches from d.79.5.1: IpsF-like: