Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2525085Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
    core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
  4. 2526105Superfamily d.79.5: IpsF-like [69765] (2 families) (S)
    forms trimers with three closely packed beta-sheets; possible link between the YjgF-like (d.79.1) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)
  5. 2526106Family d.79.5.1: IpsF-like [69766] (3 protein domains)
    automatically mapped to Pfam PF02542
  6. 2526204Protein automated matches [190985] (5 species)
    not a true protein

Species:

  1. 2526205Bacillus subtilis [TaxId:224308] [332335] (2 PDB entries)
    1. Domains for 5iwx:
      1. 2526212Domain d5iwxa_: 5iwx A: [332448]
        automated match to d1t0aa_
        complexed with mg
      2. 2526213Domain d5iwxb_: 5iwx B: [332485]
        automated match to d1t0aa_
        complexed with mg
      3. 2526214Domain d5iwxc_: 5iwx C: [332450]
        automated match to d1t0aa_
        complexed with mg
      4. 2526215Domain d5iwxd_: 5iwx D: [332462]
        automated match to d1t0aa_
        complexed with mg
      5. 2526216Domain d5iwxe_: 5iwx E: [332465]
        automated match to d1t0aa_
        complexed with mg
      6. 2526217Domain d5iwxf_: 5iwx F: [332394]
        automated match to d1t0aa_
        complexed with mg
    2. Domains for 5iwy:
      1. 2526206Domain d5iwya_: 5iwy A: [332367]
        automated match to d1t0aa_
        complexed with c5p, mg
      2. 2526207Domain d5iwyb_: 5iwy B: [332484]
        automated match to d1t0aa_
        complexed with c5p, mg
      3. 2526208Domain d5iwyc_: 5iwy C: [332444]
        automated match to d1t0aa_
        complexed with c5p, mg
      4. 2526209Domain d5iwyd_: 5iwy D: [332518]
        automated match to d1t0aa_
        complexed with c5p, mg
      5. 2526210Domain d5iwye_: 5iwy E: [332365]
        automated match to d1t0aa_
        complexed with c5p, mg
      6. 2526211Domain d5iwyf_: 5iwy F: [332336]
        automated match to d1t0aa_
        complexed with c5p, mg
  2. 2526218Burkholderia pseudomallei [TaxId:28450] [189021] (2 PDB entries)
    1. Domains for 3ike:
      1. 2526222Domain d3ikea_: 3ike A: [178369]
        automated match to d1jn1a_
        complexed with cl, cyt, mg, zn
      2. 2526223Domain d3ikeb_: 3ike B: [178370]
        automated match to d1jn1a_
        complexed with cl, cyt, mg, zn
      3. 2526224Domain d3ikec_: 3ike C: [178371]
        automated match to d1jn1a_
        complexed with cl, cyt, mg, zn
    2. Domains for 3ikf:
      1. 2526219Domain d3ikfa_: 3ikf A: [178372]
        automated match to d1jn1a_
        complexed with 717, act, cl, k, zn
      2. 2526220Domain d3ikfb_: 3ikf B: [178373]
        automated match to d1jn1a_
        complexed with 717, act, cl, k, zn
      3. 2526221Domain d3ikfc_: 3ikf C: [178374]
        automated match to d1jn1a_
        complexed with 717, act, cl, k, zn
  3. 2526225Burkholderia pseudomallei [TaxId:357348] [340879] (1 PDB entry)
  4. 2526229Salmonella typhimurium [TaxId:90371] [189751] (2 PDB entries)
    1. Domains for 3ghz:
      1. 2526236Domain d3ghza1: 3ghz A:1-156 [176656]
        Other proteins in same PDB: d3ghza2, d3ghzb2, d3ghzc2
        automated match to d1h48c_
        complexed with gol, mg, pop
      2. 2526237Domain d3ghzb1: 3ghz B:1-156 [176657]
        Other proteins in same PDB: d3ghza2, d3ghzb2, d3ghzc2
        automated match to d1h48c_
        complexed with gol, mg, pop
      3. 2526238Domain d3ghzc1: 3ghz C:1-156 [176658]
        Other proteins in same PDB: d3ghza2, d3ghzb2, d3ghzc2
        automated match to d1h48c_
        complexed with gol, mg, pop
    2. Domains for 3t80:
      1. 2526230Domain d3t80a1: 3t80 A:1-156 [185679]
        Other proteins in same PDB: d3t80a2, d3t80b2, d3t80c2, d3t80d2, d3t80e2, d3t80f2
        automated match to d1h48c_
        complexed with ctn, edo, mg, pop, zn
      2. 2526231Domain d3t80b1: 3t80 B:1-156 [185680]
        Other proteins in same PDB: d3t80a2, d3t80b2, d3t80c2, d3t80d2, d3t80e2, d3t80f2
        automated match to d1h48c_
        complexed with ctn, edo, mg, pop, zn
      3. 2526232Domain d3t80c1: 3t80 C:1-156 [185681]
        Other proteins in same PDB: d3t80a2, d3t80b2, d3t80c2, d3t80d2, d3t80e2, d3t80f2
        automated match to d1h48c_
        complexed with ctn, edo, mg, pop, zn
      4. 2526233Domain d3t80d1: 3t80 D:1-156 [185682]
        Other proteins in same PDB: d3t80a2, d3t80b2, d3t80c2, d3t80d2, d3t80e2, d3t80f2
        automated match to d1h48c_
        complexed with ctn, edo, mg, pop, zn
      5. 2526234Domain d3t80e1: 3t80 E:1-156 [185683]
        Other proteins in same PDB: d3t80a2, d3t80b2, d3t80c2, d3t80d2, d3t80e2, d3t80f2
        automated match to d1h48c_
        complexed with ctn, edo, mg, pop, zn
      6. 2526235Domain d3t80f1: 3t80 F:1-156 [185684]
        Other proteins in same PDB: d3t80a2, d3t80b2, d3t80c2, d3t80d2, d3t80e2, d3t80f2
        automated match to d1h48c_
        complexed with ctn, edo, mg, pop, zn
  5. 2526239Yersinia pestis [TaxId:214092] [188680] (2 PDB entries)
    1. Domain for 3f6m:
    2. Domain for 3fpi:

More info for Protein automated matches from d.79.5.1: IpsF-like

Timeline for Protein automated matches from d.79.5.1: IpsF-like: