SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2188399Fold d.109: Gelsolin-like [55752] (3 superfamilies)
    3 layers: a/b/a; contains mixed beta-sheet
  4. 2188400Superfamily d.109.1: Actin depolymerizing proteins [55753] (3 families) (S)
  5. 2188605Family d.109.1.0: automated matches [191561] (1 protein)
    not a true family
  6. 2188606Protein automated matches [190971] (12 species)
    not a true protein

Species:

  1. 2188607Fruit fly (Drosophila melanogaster) [TaxId:7227] [277269] (1 PDB entry)
  2. 2188609Horse (Equus caballus) [TaxId:9796] [255171] (1 PDB entry)
  3. 2188622Human (Homo sapiens) [TaxId:9606] [188619] (3 PDB entries)
    1. Domains for 2fh4:
      1. 2188648Domain d2fh4a1: 2fh4 A:412-532 [133468]
        automated match to d1npha1
      2. 2188649Domain d2fh4a2: 2fh4 A:533-628 [133469]
        automated match to d1npha2
      3. 2188650Domain d2fh4a3: 2fh4 A:629-741 [133470]
        automated match to d1npha3
      4. 2188651Domain d2fh4b1: 2fh4 B:414-532 [133471]
        automated match to d1npha1
      5. 2188652Domain d2fh4b2: 2fh4 B:533-628 [133472]
        automated match to d1npha2
      6. 2188653Domain d2fh4b3: 2fh4 B:629-741 [133473]
        automated match to d1npha3
      7. 2188654Domain d2fh4c1: 2fh4 C:414-532 [133474]
        automated match to d1npha1
      8. 2188655Domain d2fh4c2: 2fh4 C:533-628 [133475]
        automated match to d1npha2
      9. 2188656Domain d2fh4c3: 2fh4 C:629-741 [133476]
        automated match to d1npha3
    2. Domain for 2w0i:
    3. Domains for 3fg6:
      1. 2188624Domain d3fg6a1: 3fg6 A:396-494 [246130]
        automated match to d1npha1
        complexed with ca
      2. 2188625Domain d3fg6a2: 3fg6 A:511-603 [246131]
        automated match to d1npha2
        complexed with ca
      3. 2188626Domain d3fg6a3: 3fg6 A:604-715 [246132]
        automated match to d1npha3
        complexed with ca
      4. 2188627Domain d3fg6b1: 3fg6 B:396-494 [246133]
        automated match to d1npha1
        complexed with ca
      5. 2188628Domain d3fg6b2: 3fg6 B:511-603 [246134]
        automated match to d1npha2
        complexed with ca
      6. 2188629Domain d3fg6b3: 3fg6 B:604-715 [246135]
        automated match to d1npha3
        complexed with ca
      7. 2188630Domain d3fg6c1: 3fg6 C:396-494 [246136]
        automated match to d1npha1
        complexed with ca
      8. 2188631Domain d3fg6c2: 3fg6 C:511-603 [246137]
        automated match to d1npha2
        complexed with ca
      9. 2188632Domain d3fg6c3: 3fg6 C:604-712 [246138]
        automated match to d1npha3
        complexed with ca
      10. 2188633Domain d3fg6d1: 3fg6 D:396-494 [246139]
        automated match to d1npha1
        complexed with ca
      11. 2188634Domain d3fg6d2: 3fg6 D:511-603 [246140]
        automated match to d1npha2
        complexed with ca
      12. 2188635Domain d3fg6d3: 3fg6 D:604-712 [246141]
        automated match to d1npha3
        complexed with ca
      13. 2188636Domain d3fg6e1: 3fg6 E:396-494 [246142]
        automated match to d1npha1
        complexed with ca
      14. 2188637Domain d3fg6e2: 3fg6 E:511-603 [246143]
        automated match to d1npha2
        complexed with ca
      15. 2188638Domain d3fg6e3: 3fg6 E:613-715 [246144]
        automated match to d1npha3
        complexed with ca
      16. 2188639Domain d3fg6f1: 3fg6 F:396-494 [246145]
        automated match to d1npha1
        complexed with ca
      17. 2188640Domain d3fg6f2: 3fg6 F:511-603 [246146]
        automated match to d1npha2
        complexed with ca
      18. 2188641Domain d3fg6f3: 3fg6 F:604-715 [246147]
        automated match to d1npha3
        complexed with ca
      19. 2188642Domain d3fg6g1: 3fg6 G:396-494 [246148]
        automated match to d1npha1
        complexed with ca
      20. 2188643Domain d3fg6g2: 3fg6 G:511-603 [246149]
        automated match to d1npha2
        complexed with ca
      21. 2188644Domain d3fg6g3: 3fg6 G:604-715 [246150]
        automated match to d1npha3
        complexed with ca
      22. 2188645Domain d3fg6h1: 3fg6 H:396-494 [246151]
        automated match to d1npha1
        complexed with ca
      23. 2188646Domain d3fg6h2: 3fg6 H:511-603 [246152]
        automated match to d1npha2
        complexed with ca
      24. 2188647Domain d3fg6h3: 3fg6 H:604-715 [246153]
        automated match to d1npha3
        complexed with ca
  4. 2188657Leishmania donovani [TaxId:5661] [255381] (2 PDB entries)
    1. Domain for 2kd5:
    2. Domain for 2kvk:
  5. 2188660Malaria parasite (Plasmodium falciparum) [TaxId:5833] [226159] (1 PDB entry)
  6. 2188662Mouse (Mus musculus) [TaxId:10090] [225486] (2 PDB entries)
    1. Domain for 2hd7:
    2. Domain for 3daw:
  7. 2188665Nematode (Caenorhabditis elegans) [TaxId:6239] [255468] (3 PDB entries)
    1. Domain for 2lrb:
    2. Domain for 2lxx:
    3. Domain for 2mp4:
  8. 2188669Plasmodium berghei [TaxId:5821] [189993] (1 PDB entry)
  9. 2188672Plasmodium falciparum [TaxId:137071] [226143] (1 PDB entry)
  10. 2188674Toxoplasma gondii [TaxId:5811] [255410] (1 PDB entry)
  11. 2188676Trypanosome (Trypanosoma brucei) [TaxId:5691] [255441] (1 PDB entry)
  12. 2289071Streptomyces griseoflavus [TaxId:35619] [332372] (1 PDB entry)

More info for Protein automated matches from d.109.1.0: automated matches

Timeline for Protein automated matches from d.109.1.0: automated matches: