SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2069505Fold b.81: Single-stranded left-handed beta-helix [51160] (4 superfamilies)
    superhelix turns are made of parallel beta-strands and (short) turns
  4. 2069506Superfamily b.81.1: Trimeric LpxA-like enzymes [51161] (9 families) (S)
    superhelical turns are made of three short strands; duplication: the sequence hexapeptide repeats correspond to individual strands
  5. 2069791Family b.81.1.0: automated matches [191560] (1 protein)
    not a true family
  6. 2069792Protein automated matches [190967] (30 species)
    not a true protein

Species:

  1. 2069793Acinetobacter baumannii [TaxId:470] [193329] (4 PDB entries)
    1. Domains for 4e6t:
      1. 2069795Domain d4e6ta1: 4e6t A:5-262 [251695]
        Other proteins in same PDB: d4e6ta2, d4e6tb2
        automated match to d4e6ua_
        complexed with flc
      2. 2069796Domain d4e6tb1: 4e6t B:4-262 [251696]
        Other proteins in same PDB: d4e6ta2, d4e6tb2
        automated match to d4e6ua_
        complexed with flc
      3. 2069797Domain d4e6tc_: 4e6t C: [251697]
        Other proteins in same PDB: d4e6ta2, d4e6tb2
        automated match to d4e6ua_
        complexed with flc
    2. Domain for 4e6u:
    3. Domains for 4m9c:
      1. 2069798Domain d4m9ca_: 4m9c A: [235549]
        automated match to d4m9cd_
      2. 2069799Domain d4m9cb_: 4m9c B: [235551]
        automated match to d4m9cd_
      3. 2069800Domain d4m9cc_: 4m9c C: [235548]
        automated match to d4m9cd_
      4. 2069801Domain d4m9cd_: 4m9c D: [228109]
        automated match to d2npoa1
      5. 2069802Domain d4m9ce_: 4m9c E: [235554]
        automated match to d4m9cd_
      6. 2069803Domain d4m9cf_: 4m9c F: [235553]
        automated match to d4m9cd_
    4. Domains for 5vmk:
      1. 2291402Domain d5vmka2: 5vmk A:249-450 [334703]
        Other proteins in same PDB: d5vmka1, d5vmkb1, d5vmkc1
        automated match to d3fwwa2
        complexed with cit, pg4, po4
      2. 2291416Domain d5vmkb2: 5vmk B:249-449 [334717]
        Other proteins in same PDB: d5vmka1, d5vmkb1, d5vmkc1
        automated match to d3fwwa2
        complexed with cit, pg4, po4
      3. 2291468Domain d5vmkc2: 5vmk C:249-450 [334769]
        Other proteins in same PDB: d5vmka1, d5vmkb1, d5vmkc1
        automated match to d3fwwa2
        complexed with cit, pg4, po4
  2. 2069804Anaplasma phagocytophilum [TaxId:212042] [225756] (1 PDB entry)
  3. 2069806Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [188916] (2 PDB entries)
    1. Domains for 3hjj:
      1. 2069807Domain d3hjja1: 3hjj A:1-187 [177610]
        Other proteins in same PDB: d3hjja2
        automated match to d1ocxa_
        complexed with acy, gol, so4
      2. 2069808Domain d3hjjb_: 3hjj B: [177611]
        Other proteins in same PDB: d3hjja2
        automated match to d1ocxa_
        complexed with acy, gol, so4
      3. 2069809Domain d3hjjc_: 3hjj C: [177612]
        Other proteins in same PDB: d3hjja2
        automated match to d1ocxa_
        complexed with acy, gol, so4
    2. Domains for 3igj:
      1. 2069810Domain d3igja_: 3igj A: [178307]
        Other proteins in same PDB: d3igjc2
        automated match to d1ocxa_
        complexed with aco, fmt, gol, so4
      2. 2069811Domain d3igjb_: 3igj B: [178308]
        Other proteins in same PDB: d3igjc2
        automated match to d1ocxa_
        complexed with aco, fmt, gol, so4
      3. 2069812Domain d3igjc1: 3igj C:1-187 [178309]
        Other proteins in same PDB: d3igjc2
        automated match to d1ocxa_
        complexed with aco, fmt, gol, so4
  4. 2069813Bacteroides fragilis [TaxId:272559] [272379] (2 PDB entries)
    1. Domains for 4r36:
      1. 2069816Domain d4r36a_: 4r36 A: [272382]
        automated match to d4e6ua_
        complexed with act, ca, pe5, pg0
      2. 2069817Domain d4r36b_: 4r36 B: [272383]
        automated match to d4e6ua_
        complexed with act, ca, pe5, pg0
    2. Domains for 4r37:
      1. 2069814Domain d4r37a_: 4r37 A: [272381]
        automated match to d4e6ua_
        complexed with act, ca, pe5, pg0, ud1
      2. 2069815Domain d4r37b_: 4r37 B: [272380]
        automated match to d4e6ua_
        complexed with act, ca, pe5, pg0, ud1
  5. 2069818Brucella abortus [TaxId:359391] [229708] (1 PDB entry)
  6. 2069825Brucella abortus [TaxId:430066] [237007] (2 PDB entries)
    1. Domains for 4hzc:
      1. 2069828Domain d4hzca_: 4hzc A: [237010]
        automated match to d3gvdi_
        complexed with 15p, cl, mg, trs
      2. 2069829Domain d4hzcb_: 4hzc B: [237009]
        automated match to d3gvdi_
        complexed with 15p, cl, mg, trs
      3. 2069830Domain d4hzcc_: 4hzc C: [237008]
        automated match to d3gvdi_
        complexed with 15p, cl, mg, trs
      4. 2069831Domain d4hzcd_: 4hzc D: [240226]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      5. 2069832Domain d4hzce_: 4hzc E: [240227]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      6. 2069833Domain d4hzcf_: 4hzc F: [240228]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      7. 2069834Domain d4hzcg_: 4hzc G: [240229]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      8. 2069835Domain d4hzch_: 4hzc H: [240230]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      9. 2069836Domain d4hzci_: 4hzc I: [240231]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      10. 2069837Domain d4hzcj_: 4hzc J: [240232]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      11. 2069838Domain d4hzck_: 4hzc K: [240233]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
      12. 2069839Domain d4hzcl_: 4hzc L: [240234]
        automated match to d4hzcc_
        complexed with 15p, cl, mg, trs
    2. Domains for 4hzd:
      1. 2069826Domain d4hzda_: 4hzd A: [237011]
        automated match to d3gvdi_
        complexed with 15p, coa, mg
      2. 2069827Domain d4hzdb_: 4hzd B: [237012]
        automated match to d3gvdi_
        complexed with 15p, coa, mg
  7. 2069840Brucella melitensis [TaxId:359391] [225881] (1 PDB entry)
  8. 2069843Burkholderia thailandensis [TaxId:271848] [226377] (1 PDB entry)
  9. 2069850Campylobacter jejuni [TaxId:192222] [189681] (1 PDB entry)
  10. 2069852Clostridium difficile [TaxId:272563] [193268] (4 PDB entries)
    1. Domains for 3srt:
      1. 2069857Domain d3srta1: 3srt A:1-185 [216528]
        Other proteins in same PDB: d3srta2, d3srtb2
        automated match to d4isxa_
        complexed with gol
      2. 2069858Domain d3srtb1: 3srt B:1-185 [216529]
        Other proteins in same PDB: d3srta2, d3srtb2
        automated match to d4isxa_
        complexed with gol
    2. Domains for 4ebh:
      1. 2069859Domain d4ebha1: 4ebh A:1-185 [307288]
        Other proteins in same PDB: d4ebha2
        automated match to d3srtb_
        complexed with aco, mes
      2. 2069860Domain d4ebhb_: 4ebh B: [307290]
        Other proteins in same PDB: d4ebha2
        automated match to d3srtb_
        complexed with aco, mes
    3. Domains for 4isx:
      1. 2069861Domain d4isxa1: 4isx A:1-185 [193269]
        Other proteins in same PDB: d4isxa2
        automated match to d2p2oa_
        complexed with aco, mes
      2. 2069862Domain d4isxb_: 4isx B: [202675]
        Other proteins in same PDB: d4isxa2
        automated match to d4isxa_
        complexed with aco, mes
    4. Domains for 4mfg:
      1. 2069853Domain d4mfga1: 4mfg A:1-165 [235611]
        Other proteins in same PDB: d4mfga2, d4mfgb2, d4mfgc2, d4mfgd2
        automated match to d4mfgd_
        complexed with mg, ni
      2. 2069854Domain d4mfgb1: 4mfg B:1-165 [235613]
        Other proteins in same PDB: d4mfga2, d4mfgb2, d4mfgc2, d4mfgd2
        automated match to d4mfgd_
        complexed with mg, ni
      3. 2069855Domain d4mfgc1: 4mfg C:1-165 [235612]
        Other proteins in same PDB: d4mfga2, d4mfgb2, d4mfgc2, d4mfgd2
        automated match to d4mfgd_
        complexed with mg, ni
      4. 2069856Domain d4mfgd1: 4mfg D:1-165 [227805]
        Other proteins in same PDB: d4mfga2, d4mfgb2, d4mfgc2, d4mfgd2
        automated match to d1xhda_
        complexed with mg, ni
  11. 2069863Escherichia coli K-12 [TaxId:83333] [193604] (2 PDB entries)
    1. Domains for 3tio:
      1. 2069864Domain d3tioa_: 3tio A: [200826]
        automated match to d3tioc_
        complexed with po4, zn
      2. 2069865Domain d3tiob_: 3tio B: [200827]
        automated match to d3tioc_
        complexed with po4, zn
      3. 2069866Domain d3tioc_: 3tio C: [193605]
        automated match to d3r3ra_
        complexed with po4, zn
      4. 2069867Domain d3tiod_: 3tio D: [200828]
        automated match to d3tioc_
        complexed with po4, zn
      5. 2069868Domain d3tioe_: 3tio E: [200829]
        automated match to d3tioc_
        complexed with po4, zn
      6. 2069869Domain d3tiof_: 3tio F: [200830]
        automated match to d3tioc_
        complexed with po4, zn
    2. Domains for 3tis:
      1. 2069870Domain d3tisa_: 3tis A: [216828]
        automated match to d3tioc_
        complexed with zn
      2. 2069871Domain d3tisb_: 3tis B: [216829]
        automated match to d3tioc_
        complexed with zn
      3. 2069872Domain d3tisc_: 3tis C: [216830]
        automated match to d3tioc_
        complexed with zn
  12. 2069873Haemophilus influenzae [TaxId:727] [231321] (14 PDB entries)
    1. Domain for 2v0h:
    2. Domain for 2v0i:
    3. Domain for 2v0j:
    4. Domain for 2v0k:
    5. Domain for 2v0l:
    6. Domain for 2vd4:
    7. Domain for 2w0v:
    8. Domain for 2w0w:
    9. Domain for 4e1k:
    10. Domain for 4knr:
    11. Domain for 4knx:
    12. Domain for 4kpx:
    13. Domain for 4kpz:
    14. Domain for 4kql:
  13. 2069888Leptospira interrogans [TaxId:173] [188993] (3 PDB entries)
    1. Domains for 3hsq:
      1. 2069889Domain d3hsqa_: 3hsq A: [177816]
        automated match to d1lxaa_
      2. 2069890Domain d3hsqb_: 3hsq B: [177817]
        automated match to d1lxaa_
      3. 2069891Domain d3hsqc_: 3hsq C: [177818]
        automated match to d1lxaa_
    2. Domains for 3i3a:
      1. 2069895Domain d3i3aa_: 3i3a A: [178040]
        automated match to d1lxaa_
        complexed with s2n
      2. 2069896Domain d3i3ab_: 3i3a B: [178041]
        automated match to d1lxaa_
        complexed with s2n
      3. 2069897Domain d3i3ac_: 3i3a C: [178042]
        automated match to d1lxaa_
        complexed with s2n
    3. Domains for 3i3x:
      1. 2069892Domain d3i3xa_: 3i3x A: [178074]
        automated match to d1lxaa_
        complexed with u22
      2. 2069893Domain d3i3xb_: 3i3x B: [178075]
        automated match to d1lxaa_
        complexed with u22
      3. 2069894Domain d3i3xc_: 3i3x C: [178076]
        automated match to d1lxaa_
        complexed with u22
  14. 2069898Mycobacterium tuberculosis [226785] (1 PDB entry)
  15. 2069900Mycobacterium tuberculosis [TaxId:1773] [224870] (7 PDB entries)
    1. Domain for 3d8v:
    2. Domain for 3dj4:
    3. Domain for 4g3p:
    4. Domain for 4g3q:
    5. Domain for 4g3s:
    6. Domain for 4hcq:
    7. Domain for 4k6r:
  16. 2069908Mycobacterium tuberculosis [TaxId:419947] [225671] (1 PDB entry)
  17. 2069910Mycobacterium tuberculosis [TaxId:83332] [226433] (3 PDB entries)
    1. Domain for 3spt:
    2. Domain for 3st8:
    3. Domain for 4g87:
  18. 2069914Neisseria gonorrhoeae [TaxId:242231] [235544] (2 PDB entries)
    1. Domain for 4m98:
    2. Domains for 4m99:
      1. 2069916Domain d4m99a_: 4m99 A: [235547]
        automated match to d4m9cd_
        complexed with aco, na
      2. 2069917Domain d4m99b_: 4m99 B: [237064]
        automated match to d4m99a_
        complexed with aco, na
      3. 2069918Domain d4m99c_: 4m99 C: [237065]
        automated match to d4m99a_
        complexed with aco, na
  19. 2069919Pseudomonas aeruginosa [TaxId:381754] [276926] (3 PDB entries)
    1. Domains for 5dem:
      1. 2069920Domain d5dema_: 5dem A: [276936]
        automated match to d2qiaa_
        complexed with po4
      2. 2069921Domain d5demb_: 5dem B: [276938]
        automated match to d2qiaa_
        complexed with po4
      3. 2069922Domain d5demc_: 5dem C: [276940]
        automated match to d2qiaa_
        complexed with po4
      4. 2069923Domain d5demd_: 5dem D: [276939]
        automated match to d2qiaa_
        complexed with po4
      5. 2069924Domain d5deme_: 5dem E: [276937]
        automated match to d2qiaa_
        complexed with po4
      6. 2069925Domain d5demf_: 5dem F: [276941]
        automated match to d2qiaa_
        complexed with po4
    2. Domains for 5dep:
      1. 2069926Domain d5depa_: 5dep A: [276930]
        automated match to d2qiaa_
        complexed with po4, ud1
      2. 2069927Domain d5depb_: 5dep B: [276927]
        automated match to d2qiaa_
        complexed with po4, ud1
      3. 2069928Domain d5depc_: 5dep C: [276928]
        automated match to d2qiaa_
        complexed with po4, ud1
      4. 2069929Domain d5depd_: 5dep D: [276935]
        automated match to d2qiaa_
        complexed with po4, ud1
      5. 2069930Domain d5depe_: 5dep E: [276931]
        automated match to d2qiaa_
        complexed with po4, ud1
      6. 2069931Domain d5depf_: 5dep F: [276929]
        automated match to d2qiaa_
        complexed with po4, ud1
    3. Domains for 5dg3:
      1. 2069932Domain d5dg3a_: 5dg3 A: [276947]
        automated match to d2qiaa_
        complexed with po4, u21
      2. 2069933Domain d5dg3b_: 5dg3 B: [276942]
        automated match to d2qiaa_
        complexed with po4, u21
      3. 2069934Domain d5dg3c_: 5dg3 C: [276951]
        automated match to d2qiaa_
        complexed with po4, u21
      4. 2069935Domain d5dg3d_: 5dg3 D: [276948]
        automated match to d2qiaa_
        complexed with po4, u21
      5. 2069936Domain d5dg3e_: 5dg3 E: [276950]
        automated match to d2qiaa_
        complexed with po4, u21
      6. 2069937Domain d5dg3f_: 5dg3 F: [276949]
        automated match to d2qiaa_
        complexed with po4, u21
  20. 2069938Salmonella typhimurium [TaxId:90371] [189687] (1 PDB entry)
  21. 2069940Soybean (Glycine max) [TaxId:3847] [228990] (3 PDB entries)
    1. Domains for 4n69:
      1. 2069943Domain d4n69a_: 4n69 A: [228991]
        automated match to d3gvdc_
        complexed with po4, ser
      2. 2069944Domain d4n69b_: 4n69 B: [228992]
        automated match to d3gvdc_
        complexed with po4, ser
    2. Domains for 4n6a:
      1. 2069941Domain d4n6aa_: 4n6a A: [229712]
        automated match to d4n69a_
        complexed with po4
      2. 2069942Domain d4n6ab_: 4n6a B: [229711]
        automated match to d4n69a_
        complexed with po4
    3. Domains for 4n6b:
      1. 2069945Domain d4n6ba_: 4n6b A: [253907]
        automated match to d3gvdc_
        complexed with coa
      2. 2069946Domain d4n6bb_: 4n6b B: [253908]
        automated match to d3gvdc_
        complexed with coa
      3. 2069947Domain d4n6bc_: 4n6b C: [253909]
        automated match to d3gvdc_
        complexed with coa
      4. 2069948Domain d4n6bd_: 4n6b D: [253910]
        automated match to d3gvdc_
        complexed with coa
      5. 2069949Domain d4n6be_: 4n6b E: [253911]
        automated match to d3gvdc_
        complexed with coa
      6. 2069950Domain d4n6bf_: 4n6b F: [253912]
        automated match to d3gvdc_
        complexed with coa
  22. 2069951Staphylococcus aureus [TaxId:93062] [225621] (4 PDB entries)
    1. Domain for 3ftt:
    2. Domains for 3v4e:
      1. 2069953Domain d3v4ea_: 3v4e A: [217633]
        automated match to d3hjja_
        complexed with coa, peg, pge, so4
      2. 2069954Domain d3v4eb_: 3v4e B: [217634]
        automated match to d3hjja_
        complexed with coa, peg, pge, so4
      3. 2069955Domain d3v4ec_: 3v4e C: [217635]
        automated match to d3hjja_
        complexed with coa, peg, pge, so4
    3. Domain for 5u2k:
    4. Domains for 5v0z:
      1. 2288148Domain d5v0zc_: 5v0z C: [331449]
        automated match to d3ftta_
        complexed with cl, coa, edo, po4, unx
      2. 2288158Domain d5v0zb_: 5v0z B: [331459]
        automated match to d3ftta_
        complexed with cl, coa, edo, po4, unx
      3. 2288162Domain d5v0za_: 5v0z A: [331463]
        automated match to d3ftta_
        complexed with cl, coa, edo, po4, unx
  23. 2069956Thale cress (Arabidopsis thaliana) [TaxId:3702] [267882] (1 PDB entry)
  24. 2069958Thermosynechococcus elongatus [TaxId:197221] [225842] (3 PDB entries)
    1. Domains for 3kwc:
      1. 2069961Domain d3kwca_: 3kwc A: [247293]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
      2. 2069962Domain d3kwcb_: 3kwc B: [247294]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
      3. 2069963Domain d3kwcc_: 3kwc C: [247295]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
      4. 2069964Domain d3kwcd_: 3kwc D: [247296]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
      5. 2069965Domain d3kwce_: 3kwc E: [247297]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
      6. 2069966Domain d3kwcf_: 3kwc F: [247298]
        automated match to d3ow5a_
        complexed with cl, ipa, zn
    2. Domain for 3kwd:
    3. Domain for 3kwe:
  25. 2069967Vibrio cholerae [TaxId:243277] [189429] (1 PDB entry)
  26. 2069980Vibrio cholerae [TaxId:666] [188601] (1 PDB entry)
  27. 2069982Yersinia pestis [TaxId:386656] [232199] (1 PDB entry)
  28. 2069984Yersinia pseudotuberculosis [TaxId:214092] [234417] (1 PDB entry)
  29. 2287558Vibrio fischeri [TaxId:312309] [330859] (1 PDB entry)
  30. 2292069Moraxella catarrhalis [TaxId:1236608] [335370] (1 PDB entry)

More info for Protein automated matches from b.81.1.0: automated matches

Timeline for Protein automated matches from b.81.1.0: automated matches: