SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2142044Fold c.87: UDP-Glycosyltransferase/glycogen phosphorylase [53755] (1 superfamily)
    consists of two non-similar domains with 3 layers (a/b/a) each
    domain 1: parallel beta-sheet of 7 strands, order 3214567
    domain 2: parallel beta-sheet of 6 strands, order 321456
  4. 2142045Superfamily c.87.1: UDP-Glycosyltransferase/glycogen phosphorylase [53756] (14 families) (S)
  5. 2142537Family c.87.1.0: automated matches [191559] (1 protein)
    not a true family
  6. 2142538Protein automated matches [190965] (23 species)
    not a true protein

Species:

  1. 2142539Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [225410] (1 PDB entry)
  2. 2142542Clitoria ternatea [TaxId:43366] [228739] (5 PDB entries)
    1. Domain for 3wc4:
    2. Domain for 4rel:
    3. Domain for 4rem:
    4. Domain for 4ren:
    5. Domain for 4whm:
  3. 2142548Corynebacterium glutamicum [TaxId:1718] [195114] (3 PDB entries)
    1. Domains for 3c48:
      1. 2142549Domain d3c48a1: 3c48 A:1-418 [199159]
        Other proteins in same PDB: d3c48a2
        automated match to d3c48b_
        complexed with so4
      2. 2142550Domain d3c48b_: 3c48 B: [195115]
        Other proteins in same PDB: d3c48a2
        automated match to d2bisb_
        complexed with so4
    2. Domains for 3c4q:
      1. 2142553Domain d3c4qa_: 3c4q A: [208784]
        automated match to d3c48b_
        complexed with mg, so4, udp
      2. 2142554Domain d3c4qb_: 3c4q B: [208785]
        automated match to d3c48b_
        complexed with mg, so4, udp
    3. Domains for 3c4v:
      1. 2142551Domain d3c4va_: 3c4v A: [208786]
        automated match to d3c48b_
        complexed with lip, mg, udp
      2. 2142552Domain d3c4vb_: 3c4v B: [208787]
        automated match to d3c48b_
        complexed with lip, mg, udp
  4. 2142555Escherichia coli K-12 [TaxId:83333] [188877] (1 PDB entry)
  5. 2142557Escherichia coli [TaxId:562] [188591] (6 PDB entries)
    1. Domain for 2qzs:
    2. Domain for 2r4t:
    3. Domain for 2r4u:
    4. Domain for 3cop:
    5. Domain for 3cx4:
    6. Domain for 3d1j:
  6. 2142564Medicago truncatula [TaxId:3880] [188985] (2 PDB entries)
    1. Domain for 3hbf:
    2. Domain for 3hbj:
  7. 2142567Methanocaldococcus jannaschii [TaxId:243232] [257139] (2 PDB entries)
    1. Domain for 4neq:
    2. Domain for 4nes:
  8. 2142570Micromonospora echinospora [TaxId:1877] [311324] (2 PDB entries)
    1. Domain for 3otg:
    2. Domains for 3oth:
      1. 2142572Domain d3otha1: 3oth A:1-388 [306172]
        Other proteins in same PDB: d3otha2
        automated match to d2p6pa_
        complexed with clj, tyd
      2. 2142573Domain d3othb_: 3oth B: [306174]
        Other proteins in same PDB: d3otha2
        automated match to d2p6pa_
        complexed with clj, tyd
  9. 2142574Photobacterium damselae [TaxId:38293] [261399] (1 PDB entry)
  10. 2142576Photobacterium phosphoreum [TaxId:659] [188922] (1 PDB entry)
  11. 2142579Pseudomonas aeruginosa, PA01 [TaxId:208964] [197045] (1 PDB entry)
  12. 2142581Rickettsia bellii [TaxId:336407] [194265] (1 PDB entry)
  13. 2142583Saccharopolyspora spinosa [TaxId:60894] [311342] (3 PDB entries)
    1. Domains for 3tsa:
      1. 2142584Domain d3tsaa1: 3tsa A:1-385 [306590]
        Other proteins in same PDB: d3tsaa2
        automated match to d2p6pa_
        complexed with glc, mg
      2. 2142585Domain d3tsab_: 3tsa B: [306592]
        Other proteins in same PDB: d3tsaa2
        automated match to d2p6pa_
        complexed with glc, mg
    2. Domains for 3uyk:
      1. 2142586Domain d3uyka1: 3uyk A:1-386 [306668]
        Other proteins in same PDB: d3uyka2
        automated match to d2p6pa_
        complexed with 0cx, bgc, mg
      2. 2142587Domain d3uykb_: 3uyk B: [306670]
        Other proteins in same PDB: d3uyka2
        automated match to d2p6pa_
        complexed with 0cx, bgc, mg
    3. Domains for 3uyl:
      1. 2142588Domain d3uyla1: 3uyl A:1-385 [306671]
        Other proteins in same PDB: d3uyla2
        automated match to d2p6pa_
        complexed with glc, mg, tyd
      2. 2142589Domain d3uylb_: 3uyl B: [306673]
        Other proteins in same PDB: d3uyla2
        automated match to d2p6pa_
        complexed with glc, mg, tyd
  14. 2142590Streptomyces cyanogenus [TaxId:80860] [311430] (5 PDB entries)
    1. Domains for 4rie:
      1. 2142597Domain d4riea1: 4rie A:1-373 [309437]
        Other proteins in same PDB: d4riea2, d4rieb2
        automated match to d2p6pa_
      2. 2142598Domain d4rieb1: 4rie B:1-373 [309439]
        Other proteins in same PDB: d4riea2, d4rieb2
        automated match to d2p6pa_
    2. Domains for 4rif:
      1. 2142591Domain d4rifa1: 4rif A:1-373 [309441]
        Other proteins in same PDB: d4rifa2, d4rifb2
        automated match to d2p6pa_
        complexed with 3r2
      2. 2142592Domain d4rifb1: 4rif B:1-373 [309443]
        Other proteins in same PDB: d4rifa2, d4rifb2
        automated match to d2p6pa_
        complexed with 3r2
    3. Domains for 4rig:
      1. 2142593Domain d4riga1: 4rig A:1-373 [309445]
        Other proteins in same PDB: d4riga2, d4rigb2
        automated match to d2p6pa_
        complexed with mg
      2. 2142594Domain d4rigb1: 4rig B:1-373 [309447]
        Other proteins in same PDB: d4riga2, d4rigb2
        automated match to d2p6pa_
        complexed with mg
    4. Domains for 4rih:
      1. 2142599Domain d4riha_: 4rih A: [309449]
        Other proteins in same PDB: d4rihb2
        automated match to d2p6pa_
        complexed with 3r2, mg
      2. 2142600Domain d4rihb1: 4rih B:1-373 [309450]
        Other proteins in same PDB: d4rihb2
        automated match to d2p6pa_
        complexed with 3r2, mg
    5. Domains for 4rii:
      1. 2142595Domain d4riia1: 4rii A:1-373 [309452]
        Other proteins in same PDB: d4riia2, d4riib2
        automated match to d2p6pa_
        complexed with mg, tyd
      2. 2142596Domain d4riib1: 4rii B:1-373 [309454]
        Other proteins in same PDB: d4riia2, d4riib2
        automated match to d2p6pa_
        complexed with mg, tyd
  15. 2142601Streptomyces nogalater [TaxId:38314] [311356] (3 PDB entries)
    1. Domains for 4amb:
      1. 2142604Domain d4amba1: 4amb A:13-389 [307005]
        Other proteins in same PDB: d4amba2, d4ambb2
        automated match to d2p6pb_
        complexed with dud
      2. 2142605Domain d4ambb1: 4amb B:13-390 [307007]
        Other proteins in same PDB: d4amba2, d4ambb2
        automated match to d2p6pb_
        complexed with dud
    2. Domains for 4amg:
      1. 2142602Domain d4amga1: 4amg A:13-389 [307009]
        Other proteins in same PDB: d4amga2, d4amgb2
        automated match to d2p6pb_
      2. 2142603Domain d4amgb1: 4amg B:13-389 [307011]
        Other proteins in same PDB: d4amga2, d4amgb2
        automated match to d2p6pb_
    3. Domains for 4an4:
      1. 2142606Domain d4an4a1: 4an4 A:13-390 [307017]
        Other proteins in same PDB: d4an4a2, d4an4b2, d4an4c2, d4an4d2
        automated match to d2p6pb_
        complexed with dud
      2. 2142607Domain d4an4b1: 4an4 B:13-390 [307019]
        Other proteins in same PDB: d4an4a2, d4an4b2, d4an4c2, d4an4d2
        automated match to d2p6pb_
        complexed with dud
      3. 2142608Domain d4an4c1: 4an4 C:13-389 [307021]
        Other proteins in same PDB: d4an4a2, d4an4b2, d4an4c2, d4an4d2
        automated match to d2p6pb_
        complexed with dud
      4. 2142609Domain d4an4d1: 4an4 D:13-390 [307023]
        Other proteins in same PDB: d4an4a2, d4an4b2, d4an4c2, d4an4d2
        automated match to d2p6pb_
        complexed with dud
  16. 2142610Streptomyces sp. [TaxId:746675] [311382] (2 PDB entries)
    1. Domain for 4fzr:
    2. Domain for 4g2t:
  17. 2142613Thale cress (Arabidopsis thaliana) [TaxId:3702] [256209] (3 PDB entries)
    1. Domains for 4bqe:
      1. 2142614Domain d4bqea_: 4bqe A: [251296]
        automated match to d3amva_
        complexed with gol, peg, pge, plp
      2. 2142615Domain d4bqeb_: 4bqe B: [251297]
        automated match to d3amva_
        complexed with gol, peg, pge, plp
    2. Domains for 4bqf:
      1. 2142618Domain d4bqfa_: 4bqf A: [251298]
        automated match to d3amva_
        complexed with glc, gol, plp, qps
      2. 2142619Domain d4bqfb_: 4bqf B: [251299]
        automated match to d3amva_
        complexed with glc, gol, plp, qps
    3. Domains for 4bqi:
      1. 2142616Domain d4bqia_: 4bqi A: [251300]
        automated match to d3amva_
        complexed with gol, mlr, peg, plp
      2. 2142617Domain d4bqib_: 4bqi B: [251301]
        automated match to d3amva_
        complexed with gol, mlr, peg, plp
  18. 2271855Burkholderia xenovorans [TaxId:266265] [315156] (1 PDB entry)
  19. 2273342Staphylococcus aureus [TaxId:1280] [316643] (1 PDB entry)
  20. 2274731Homo sapiens [TaxId:9606] [318032] (1 PDB entry)
  21. 2281463Oryza sativa [TaxId:39947] [324764] (3 PDB entries)
    1. Domain for 5tmb:
    2. Domain for 5tmd:
    3. Domain for 5tme:
  22. 2283015Burkholderia vietnamiensis [TaxId:269482] [326316] (1 PDB entry)
  23. 2286577Burkholderia multivorans [TaxId:395019] [329878] (1 PDB entry)

More info for Protein automated matches from c.87.1.0: automated matches

Timeline for Protein automated matches from c.87.1.0: automated matches: