SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2105373Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
    core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
  4. 2105374Superfamily c.26.1: Nucleotidylyl transferase [52374] (6 families) (S)
  5. 2105663Family c.26.1.3: Adenylyltransferase [52397] (6 protein domains)
  6. 2105820Protein automated matches [190964] (5 species)
    not a true protein

Species:

  1. 2105821Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [188590] (5 PDB entries)
    1. Domains for 3e27:
      1. 2105828Domain d3e27a_: 3e27 A: [174541]
        automated match to d1kama_
        complexed with dnd, mg
      2. 2105829Domain d3e27b_: 3e27 B: [174542]
        automated match to d1kama_
        complexed with dnd, mg
      3. 2105830Domain d3e27c_: 3e27 C: [174543]
        automated match to d1kama_
        complexed with dnd, mg
      4. 2105831Domain d3e27d_: 3e27 D: [174544]
        automated match to d1kama_
        complexed with dnd, mg
    2. Domains for 3hfj:
      1. 2105826Domain d3hfja_: 3hfj A: [177534]
        automated match to d1kama_
        complexed with ca, dz9
      2. 2105827Domain d3hfjb_: 3hfj B: [177535]
        automated match to d1kama_
        complexed with ca, dz9
    3. Domains for 3mla:
      1. 2105824Domain d3mlaa_: 3mla A: [181376]
        automated match to d1kama_
        complexed with dms, fmt, jjz
      2. 2105825Domain d3mlab_: 3mla B: [181377]
        automated match to d1kama_
        complexed with dms, fmt, jjz
    4. Domains for 3mlb:
      1. 2105822Domain d3mlba_: 3mlb A: [181378]
        automated match to d1kama_
        complexed with fmt, k, ljz
      2. 2105823Domain d3mlbb_: 3mlb B: [181379]
        automated match to d1kama_
        complexed with fmt, k, ljz
    5. Domains for 3mmx:
      1. 2105832Domain d3mmxa_: 3mmx A: [181431]
        automated match to d1kama_
        complexed with cit, dms, k, kjz
      2. 2105833Domain d3mmxb_: 3mmx B: [181432]
        automated match to d1kama_
        complexed with cit, dms, k, kjz
      3. 2105834Domain d3mmxc_: 3mmx C: [181433]
        automated match to d1kama_
        complexed with cit, dms, k, kjz
      4. 2105835Domain d3mmxd_: 3mmx D: [181434]
        automated match to d1kama_
        complexed with cit, dms, k, kjz
      5. 2105836Domain d3mmxe_: 3mmx E: [181435]
        automated match to d1kama_
        complexed with cit, dms, k, kjz
      6. 2105837Domain d3mmxf_: 3mmx F: [181436]
        automated match to d1kama_
        complexed with cit, dms, k, kjz
      7. 2105838Domain d3mmxg_: 3mmx G: [181437]
        automated match to d1kama_
        complexed with cit, dms, k, kjz
      8. 2105839Domain d3mmxh_: 3mmx H: [181438]
        automated match to d1kama_
        complexed with cit, dms, k, kjz
  2. 2105840Pseudomonas aeruginosa [TaxId:350703] [279626] (4 PDB entries)
    1. Domains for 3x1j:
      1. 2105847Domain d3x1ja_: 3x1j A: [279645]
        automated match to d1gn8a_
        complexed with aco, dms, gol, peg, po4
      2. 2105848Domain d3x1jb_: 3x1j B: [279643]
        automated match to d1gn8a_
        complexed with aco, dms, gol, peg, po4
      3. 2105849Domain d3x1jc_: 3x1j C: [279648]
        automated match to d1gn8a_
        complexed with aco, dms, gol, peg, po4
    2. Domains for 3x1k:
      1. 2105853Domain d3x1ka_: 3x1k A: [279646]
        automated match to d1gn8a_
        complexed with anp, dms, fmt, gol, po4
      2. 2105854Domain d3x1kb_: 3x1k B: [279649]
        automated match to d1gn8a_
        complexed with anp, dms, fmt, gol, po4
      3. 2105855Domain d3x1kc_: 3x1k C: [279642]
        automated match to d1gn8a_
        complexed with anp, dms, fmt, gol, po4
      4. 2105856Domain d3x1kd_: 3x1k D: [279647]
        automated match to d1gn8a_
        complexed with anp, dms, fmt, gol, po4
      5. 2105857Domain d3x1ke_: 3x1k E: [279644]
        automated match to d1gn8a_
        complexed with anp, dms, fmt, gol, po4
      6. 2105858Domain d3x1kf_: 3x1k F: [279651]
        automated match to d1gn8a_
        complexed with anp, dms, fmt, gol, po4
    3. Domains for 3x1m:
      1. 2105850Domain d3x1ma_: 3x1m A: [279650]
        automated match to d1gn8a_
        complexed with act, coa, dms, fmt, peg
      2. 2105851Domain d3x1mb_: 3x1m B: [279652]
        automated match to d1gn8a_
        complexed with act, coa, dms, fmt, peg
      3. 2105852Domain d3x1mc_: 3x1m C: [279653]
        automated match to d1gn8a_
        complexed with act, coa, dms, fmt, peg
    4. Domains for 4ruk:
      1. 2105841Domain d4ruka_: 4ruk A: [279628]
        automated match to d1gn8a_
        complexed with act, ca, coa, dms, fmt, gol, pop
      2. 2105842Domain d4rukb_: 4ruk B: [279627]
        automated match to d1gn8a_
        complexed with act, ca, coa, dms, fmt, gol, pop
      3. 2105843Domain d4rukc_: 4ruk C: [279630]
        automated match to d1gn8a_
        complexed with act, ca, coa, dms, fmt, gol, pop
      4. 2105844Domain d4rukd_: 4ruk D: [279632]
        automated match to d1gn8a_
        complexed with act, ca, coa, dms, fmt, gol, pop
      5. 2105845Domain d4ruke_: 4ruk E: [279631]
        automated match to d1gn8a_
        complexed with act, ca, coa, dms, fmt, gol, pop
      6. 2105846Domain d4rukf_: 4ruk F: [279629]
        automated match to d1gn8a_
        complexed with act, ca, coa, dms, fmt, gol, pop
  3. 2105859Yersinia pestis [TaxId:214092] [189196] (2 PDB entries)
    1. Domain for 3l92:
    2. Domain for 3l93:
  4. 2274501Escherichia coli [TaxId:83333] [317802] (1 PDB entry)
  5. 2282811Pseudomonas aeruginosa [TaxId:557722] [326112] (1 PDB entry)

More info for Protein automated matches from c.26.1.3: Adenylyltransferase

Timeline for Protein automated matches from c.26.1.3: Adenylyltransferase: