SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.116: alpha/beta knot [75216] (1 superfamily)
core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
Superfamily c.116.1: alpha/beta knot [75217] (9 families)
known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
all known members have dimeric structures
Family c.116.1.0: automated matches [191557] (1 protein)
not a true family
Protein automated matches [190961] (16 species)
not a true protein

Species:

Anaplasma phagocytophilum [TaxId:212042] [232723] (2 PDB entries)
1. Domains for 3knu:
  1. Domain d3knua1: 3knu A:1-211 [232724]
    Other proteins in same PDB: d3knua2, d3knub2, d3knuc2
    automated match to d3quva_
  2. Domain d3knub1: 3knu B:1-211 [232725]
    Other proteins in same PDB: d3knua2, d3knub2, d3knuc2
    automated match to d3quva_
  3. Domain d3knuc1: 3knu C:1-210 [232726]
    Other proteins in same PDB: d3knua2, d3knub2, d3knuc2
    automated match to d3quva_
  4. Domain d3knud_: 3knu D: [232727]
    Other proteins in same PDB: d3knua2, d3knub2, d3knuc2
    automated match to d3quva_
2. Domain for 4ig6:
  - Domain d4ig6a1: 4ig6 A:1-222 [252618]
    Other proteins in same PDB: d4ig6a2
    automated match to d3knub_
    protein/RNA complex; complexed with cl, sah
Archaeoglobus fulgidus [TaxId:2234] [255990] (1 PDB entry)
- Domain for 3o7b:
  - Domain d3o7ba_: 3o7b A: [248124]
    automated match to d3bbda1
    complexed with sah, tyr
Bacillus anthracis [TaxId:261594] [257590] (1 PDB entry)
- Domains for 4pzk:
  1. Domain d4pzka_: 4pzk A: [257591]
    automated match to d3l8ub_
    complexed with sah
  2. Domain d4pzkb_: 4pzk B: [257592]
    automated match to d3l8ub_
    complexed with sah
Bartonella henselae [TaxId:38323] [225732] (1 PDB entry)
- Domains for 3ief:
  1. Domain d3iefa_: 3ief A: [211603]
    automated match to d3ky7a_
  2. Domain d3iefb_: 3ief B: [211604]
    automated match to d3ky7a_
Burkholderia phymatum [TaxId:391038] [256282] (2 PDB entries)
1. Domains for 4h3y:
  1. Domain d4h3ya1: 4h3y A:1-254 [252374]
    Other proteins in same PDB: d4h3ya2, d4h3yb2
    automated match to d1uala_
    complexed with cl, sah
  2. Domain d4h3yb1: 4h3y B:1-254 [252375]
    Other proteins in same PDB: d4h3ya2, d4h3yb2
    automated match to d1uala_
    complexed with cl, sah
2. Domains for 4h3z:
  1. Domain d4h3za1: 4h3z A:1-254 [252376]
    Other proteins in same PDB: d4h3za2, d4h3zb2
    automated match to d1uala_
    complexed with cl, sah
  2. Domain d4h3zb1: 4h3z B:1-254 [252377]
    Other proteins in same PDB: d4h3za2, d4h3zb2
    automated match to d1uala_
    complexed with cl, sah
Burkholderia pseudomallei [TaxId:320372] [197042] (1 PDB entry)
- Domains for 4kgn:
  1. Domain d4kgna_: 4kgn A: [197043]
    Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
    automated match to d3e5ya_
    complexed with cl, sah
  2. Domain d4kgnb_: 4kgn B: [197044]
    Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
    automated match to d3e5ya_
    complexed with cl, sah
Burkholderia pseudomallei [TaxId:425067] [188581] (2 PDB entries)
1. Domains for 3e5y:
  1. Domain d3e5ya_: 3e5y A: [174682]
    automated match to d1j85a_
  2. Domain d3e5yb_: 3e5y B: [174683]
    automated match to d1j85a_
2. Domains for 4kgn:
  1. Domain d4kgnc1: 4kgn C:1-156 [202845]
    Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
    automated match to d3e5ya_
    complexed with cl, sah
  2. Domain d4kgnd1: 4kgn D:1-156 [202846]
    Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
    automated match to d3e5ya_
    complexed with cl, sah
  3. Domain d4kgne_: 4kgn E: [202847]
    Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
    automated match to d3e5ya_
    complexed with cl, sah
  4. Domain d4kgnf1: 4kgn F:1-156 [202848]
    Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
    automated match to d3e5ya_
    complexed with cl, sah
  5. Domain d4kgng_: 4kgn G: [202849]
    Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
    automated match to d3e5ya_
    complexed with cl, sah
  6. Domain d4kgnh_: 4kgn H: [202850]
    Other proteins in same PDB: d4kgnc2, d4kgnd2, d4kgnf2
    automated match to d3e5ya_
    complexed with cl, sah
Escherichia coli K-12 [TaxId:83333] [234948] (2 PDB entries)
1. Domains for 4jak:
  1. Domain d4jaka1: 4jak A:2-154 [234949]
    Other proteins in same PDB: d4jaka2, d4jakb2
    automated match to d4kgnd_
  2. Domain d4jakb1: 4jak B:2-154 [234950]
    Other proteins in same PDB: d4jaka2, d4jakb2
    automated match to d4kgnd_
2. Domains for 4jal:
  1. Domain d4jala1: 4jal A:2-155 [237816]
    Other proteins in same PDB: d4jala2, d4jalb2
    automated match to d4jaka_
    complexed with edo, epe, sah
  2. Domain d4jalb1: 4jal B:2-154 [237817]
    Other proteins in same PDB: d4jala2, d4jalb2
    automated match to d4jaka_
    complexed with edo, epe, sah
Homo sapiens [TaxId:9606] [314023] (1 PDB entry)
- Domain for 5fai:
  - Domain d5faia_: 5fai A: [314024]
    automated match to d2v3ja1
    complexed with cit, sah, unx

Legionella pneumophila [TaxId:446] [341250] (2 PDB entries)

Domains for 5o95:
1. Domain d5o95a2: 5o95 A:76-244 [341256]
  Other proteins in same PDB: d5o95a1, d5o95b1, d5o95b3, d5o95c1, d5o95c3, d5o95d1
  automated match to d4e8ba2
2. Domain d5o95b2: 5o95 B:76-244 [341283]
  Other proteins in same PDB: d5o95a1, d5o95b1, d5o95b3, d5o95c1, d5o95c3, d5o95d1
  automated match to d4e8ba2
3. Domain d5o95c2: 5o95 C:76-244 [341286]
  Other proteins in same PDB: d5o95a1, d5o95b1, d5o95b3, d5o95c1, d5o95c3, d5o95d1
  automated match to d4e8ba2
4. Domain d5o95d2: 5o95 D:76-244 [341251]
  Other proteins in same PDB: d5o95a1, d5o95b1, d5o95b3, d5o95c1, d5o95c3, d5o95d1
  automated match to d4e8ba2

Domains for 5o96:

Domain d5o96a2: 5o96 A:76-244 [341269]
Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
automated match to d4e8ba2
protein/RNA complex; complexed with sam

Domain d5o96b2: 5o96 B:76-244 [341265]
Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
automated match to d4e8ba2
protein/RNA complex; complexed with sam

Domain d5o96c2: 5o96 C:76-244 [341333]
Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
automated match to d4e8ba2
protein/RNA complex; complexed with sam

Domain d5o96d2: 5o96 D:76-244 [341331]
Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
automated match to d4e8ba2
protein/RNA complex; complexed with sam

Domain d5o96e2: 5o96 E:76-244 [341254]
Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
automated match to d4e8ba2
protein/RNA complex; complexed with sam

Domain d5o96f2: 5o96 F:76-244 [341262]
Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
automated match to d4e8ba2
protein/RNA complex; complexed with sam

Domain d5o96g2: 5o96 G:76-244 [341404]
Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
automated match to d4e8ba2
protein/RNA complex; complexed with sam

Domain d5o96h2: 5o96 H:76-244 [341267]
Other proteins in same PDB: d5o96a1, d5o96b1, d5o96c1, d5o96d1, d5o96e1, d5o96f1, d5o96g1, d5o96h1
automated match to d4e8ba2
protein/RNA complex; complexed with sam

Methanocaldococcus jannaschii [TaxId:2190] [189685] (2 PDB entries)
1. Domain for 3ai9:
  - Domain d3ai9x_: 3ai9 X: [172203]
    automated match to d2qmma1
    complexed with mg, sam
2. Domains for 3aia:
  1. Domain d3aiaa1: 3aia A:2-200 [172204]
    Other proteins in same PDB: d3aiaa2, d3aiab2
    automated match to d2qmma1
    complexed with pbl, sam
  2. Domain d3aiab1: 3aia B:2-200 [172205]
    Other proteins in same PDB: d3aiaa2, d3aiab2
    automated match to d2qmma1
    complexed with pbl, sam
Mycobacterium abscessus [TaxId:561007] [226092] (1 PDB entry)
- Domains for 3quv:
  1. Domain d3quva1: 3quv A:1-227 [215428]
    Other proteins in same PDB: d3quva2, d3quvb2
    automated match to d1oy5a_
    complexed with edo
  2. Domain d3quvb1: 3quv B:1-231 [215429]
    Other proteins in same PDB: d3quva2, d3quvb2
    automated match to d1oy5a_
    complexed with edo
Pyrococcus horikoshii [TaxId:53953] [255719] (1 PDB entry)
- Domains for 2yy8:
  1. Domain d2yy8a_: 2yy8 A: [244880]
    automated match to d2o3aa1
    protein/RNA complex; complexed with mta, sam
  2. Domain d2yy8b_: 2yy8 B: [244881]
    automated match to d2o3aa1
    protein/RNA complex; complexed with mta, sam
Staphylococcus aureus [TaxId:282458] [189168] (1 PDB entry)
- Domain for 3ky7:
  - Domain d3ky7a_: 3ky7 A: [179805]
    automated match to d1uaja_
Streptococcus mutans [TaxId:210007] [189590] (1 PDB entry)
- Domains for 3l8u:
  1. Domain d3l8ua_: 3l8u A: [180093]
    automated match to d1j85a_
  2. Domain d3l8ub_: 3l8u B: [180094]
    automated match to d1j85a_
Thermus thermophilus [TaxId:262724] [319700] (1 PDB entry)
- Domains for 5co4:
  1. Domain d5co4a1: 5co4 A:1-149 [319745]
    Other proteins in same PDB: d5co4a2, d5co4b2
    automated match to d1mxia_
    complexed with gol, mta
  2. Domain d5co4b1: 5co4 B:1-148 [319701]
    Other proteins in same PDB: d5co4a2, d5co4b2
    automated match to d1mxia_
    complexed with gol, mta

More info for Protein automated matches from c.116.1.0: automated matches

Timeline for Protein automated matches from c.116.1.0: automated matches:

Protein automated matches from c.116.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from c.116.1.0: automated matches appears in SCOPe 2.05
Protein automated matches from c.116.1.0: automated matches appears in SCOPe 2.07
Protein automated matches from c.116.1.0: automated matches appears in the current release, SCOPe 2.08