Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1548217Fold b.50: Acid proteases [50629] (1 superfamily)
    barrel, closed; n=6, S=10, complex topology
  4. 1548218Superfamily b.50.1: Acid proteases [50630] (4 families) (S)
  5. 1550299Family b.50.1.0: automated matches [191552] (1 protein)
    not a true family
  6. 1550300Protein automated matches [190954] (8 species)
    not a true protein

Species:

  1. 1550301Blattella germanica [TaxId:6973] [189570] (3 PDB entries)
    1. Domain for 1yg9:
    2. Domains for 2nr6:
      1. 1550304Domain d2nr6a_: 2nr6 A: [198177]
        Other proteins in same PDB: d2nr6c1, d2nr6c2, d2nr6d1, d2nr6e1, d2nr6e2, d2nr6f1
        automated match to d1yg9a_
        complexed with nag, zn
      2. 1550305Domain d2nr6b_: 2nr6 B: [198178]
        Other proteins in same PDB: d2nr6c1, d2nr6c2, d2nr6d1, d2nr6e1, d2nr6e2, d2nr6f1
        automated match to d1yg9a_
        complexed with nag, zn
    3. Domain for 3liz:
  2. 1550306Candida parapsilosis [TaxId:5480] [188902] (2 PDB entries)
    1. Domains for 3fv3:
      1. 1550307Domain d3fv3a_: 3fv3 A: [176067]
        automated match to d1j71a_
        complexed with gol, so4
      2. 1550308Domain d3fv3b_: 3fv3 B: [176068]
        automated match to d1j71a_
        complexed with gol, so4
      3. 1550309Domain d3fv3c_: 3fv3 C: [176069]
        automated match to d1j71a_
        complexed with gol, so4
      4. 1550310Domain d3fv3d_: 3fv3 D: [176070]
        automated match to d1j71a_
        complexed with gol, so4
      5. 1550311Domain d3fv3e_: 3fv3 E: [176071]
        automated match to d1j71a_
        complexed with gol, so4
      6. 1550312Domain d3fv3f_: 3fv3 F: [176072]
        automated match to d1j71a_
        complexed with gol, so4
      7. 1550313Domain d3fv3g_: 3fv3 G: [176073]
        automated match to d1j71a_
        complexed with gol, so4
      8. 1550314Domain d3fv3h_: 3fv3 H: [176074]
        automated match to d1j71a_
        complexed with gol, so4
    2. Domains for 3tne:
      1. 1550315Domain d3tnea_: 3tne A: [195873]
        automated match to d3fv3a_
        complexed with rit
      2. 1550316Domain d3tneb_: 3tne B: [195874]
        automated match to d3fv3a_
        complexed with rit
  3. 1550317Carrot (Daucus carota) [TaxId:4039] [195560] (2 PDB entries)
    1. Domain for 3vla:
    2. Domains for 3vlb:
      1. 1550319Domain d3vlba_: 3vlb A: [195564]
        Other proteins in same PDB: d3vlbb_, d3vlbd_
        automated match to d3hd8c_
      2. 1550320Domain d3vlbc_: 3vlb C: [195562]
        Other proteins in same PDB: d3vlbb_, d3vlbd_
        automated match to d3hd8c_
  4. 1550321Human (Homo sapiens) [TaxId:9606] [193159] (12 PDB entries)
    1. Domains for 2ewy:
      1. 1550340Domain d2ewya_: 2ewy A: [241799]
        automated match to d3zkqa_
        complexed with dbo
      2. 1550341Domain d2ewyb_: 2ewy B: [241800]
        automated match to d3zkqa_
        complexed with dbo
      3. 1550342Domain d2ewyc_: 2ewy C: [241801]
        automated match to d3zkqa_
        complexed with dbo
      4. 1550343Domain d2ewyd_: 2ewy D: [241802]
        automated match to d3zkqa_
        complexed with dbo
    2. Domains for 3zkg:
      1. 1550327Domain d3zkga_: 3zkg A: [197211]
        automated match to d2b8la_
        complexed with b3p; mutant
      2. 1550328Domain d3zkgb_: 3zkg B: [197212]
        automated match to d2b8la_
        complexed with b3p; mutant
    3. Domains for 3zki:
      1. 1550337Domain d3zkia_: 3zki A: [218295]
        automated match to d3zkga_
        complexed with wzv; mutant
      2. 1550338Domain d3zkib_: 3zki B: [218296]
        automated match to d3zlqb_
        complexed with wzv; mutant
    4. Domains for 3zkm:
      1. 1550325Domain d3zkma_: 3zkm A: [218297]
        Other proteins in same PDB: d3zkmd1, d3zkmd2, d3zkml1, d3zkml2
        automated match to d4belb_
        complexed with dms, gol, so4
      2. 1550326Domain d3zkmb_: 3zkm B: [218298]
        Other proteins in same PDB: d3zkmd1, d3zkmd2, d3zkml1, d3zkml2
        automated match to d4belb_
        complexed with dms, gol, so4
    5. Domains for 3zkn:
      1. 1550329Domain d3zkna_: 3zkn A: [197283]
        Other proteins in same PDB: d3zknd1, d3zknd2, d3zknl1, d3zknl2
        automated match to d2qzka_
        complexed with dms, gol, so4, wzv
      2. 1550330Domain d3zknb_: 3zkn B: [197284]
        Other proteins in same PDB: d3zknd1, d3zknd2, d3zknl1, d3zknl2
        automated match to d2qzka_
        complexed with dms, gol, so4, wzv
    6. Domain for 3zkq:
    7. Domain for 3zks:
    8. Domain for 3zkx:
    9. Domains for 3zlq:
      1. 1550335Domain d3zlqa_: 3zlq A: [193161]
        Other proteins in same PDB: d3zlqc_, d3zlqd_
        automated match to d2b8la_
        complexed with 6t9
      2. 1550336Domain d3zlqb_: 3zlq B: [193160]
        Other proteins in same PDB: d3zlqc_, d3zlqd_
        automated match to d2b8la_
        complexed with 6t9
    10. Domain for 4amt:
    11. Domains for 4bel:
      1. 1550323Domain d4bela_: 4bel A: [197144]
        Other proteins in same PDB: d4beld_, d4bele_
        automated match to d2qzka_
        complexed with b3p, cl
      2. 1550324Domain d4belb_: 4bel B: [197145]
        Other proteins in same PDB: d4beld_, d4bele_
        automated match to d2qzka_
        complexed with b3p, cl
    12. Domains for 4bfb:
      1. 1550332Domain d4bfba_: 4bfb A: [197146]
        Other proteins in same PDB: d4bfbd_, d4bfbe_
        automated match to d2qzka_
        complexed with b3p
      2. 1550333Domain d4bfbb_: 4bfb B: [197147]
        Other proteins in same PDB: d4bfbd_, d4bfbe_
        automated match to d2qzka_
        complexed with b3p
  5. 1550344Hypocrea jecorina [TaxId:51453] [188627] (1 PDB entry)
  6. 1550346Malaria parasite (Plasmodium falciparum) [TaxId:5833] [256045] (1 PDB entry)
  7. 1550348Soybean (Glycine max) [TaxId:3847] [196358] (1 PDB entry)
  8. 1550353Trichoderma reesei [TaxId:51453] [188563] (1 PDB entry)

More info for Protein automated matches from b.50.1.0: automated matches

Timeline for Protein automated matches from b.50.1.0: automated matches: