Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2484691Fold c.92: Chelatase-like [53799] (3 superfamilies)
    duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134
  4. 2484798Superfamily c.92.2: "Helical backbone" metal receptor [53807] (5 families) (S)
    contains a long alpha helical insertion in the interdomain linker
  5. 2485108Family c.92.2.0: automated matches [191548] (1 protein)
    not a true family
  6. 2485109Protein automated matches [190944] (36 species)
    not a true protein

Species:

  1. 2485110Azotobacter vinelandii [TaxId:322710] [256020] (1 PDB entry)
  2. 2485115Bacillus cereus [TaxId:1396] [233693] (1 PDB entry)
  3. 2485117Bacillus subtilis [TaxId:1423] [193874] (1 PDB entry)
  4. 2485120Bacillus subtilis [TaxId:224308] [232282] (2 PDB entries)
    1. Domain for 3g9q:
    2. Domains for 3gfv:
      1. 2485121Domain d3gfva1: 3gfv A:14-297 [232283]
        Other proteins in same PDB: d3gfva2, d3gfvb2
        automated match to d3tefa_
        complexed with asn, po4
      2. 2485122Domain d3gfvb1: 3gfv B:14-297 [239320]
        Other proteins in same PDB: d3gfva2, d3gfvb2
        automated match to d3gfva_
        complexed with asn, po4
  5. 2485124Burkholderia cenocepacia [TaxId:216591] [335925] (3 PDB entries)
    1. Domains for 5giz:
      1. 2485125Domain d5giza1: 5giz A:40-305 [335927]
        Other proteins in same PDB: d5giza2, d5gizb2
        automated match to d2r7ab_
        complexed with cl, so4
      2. 2485126Domain d5gizb1: 5giz B:40-305 [336051]
        Other proteins in same PDB: d5giza2, d5gizb2
        automated match to d2r7ab_
        complexed with cl, so4
    2. Domains for 5y89:
      1. 2485129Domain d5y89a1: 5y89 A:40-305 [340193]
        Other proteins in same PDB: d5y89a2, d5y89b2
        automated match to d2r7ab_
        complexed with act, hem, so4
      2. 2485130Domain d5y89b1: 5y89 B:40-305 [340179]
        Other proteins in same PDB: d5y89a2, d5y89b2
        automated match to d2r7ab_
        complexed with act, hem, so4
    3. Domains for 5y8a:
      1. 2485127Domain d5y8aa1: 5y8a A:40-305 [340188]
        Other proteins in same PDB: d5y8aa2, d5y8ab2
        automated match to d2r7ab_
        complexed with ca, hem
      2. 2485128Domain d5y8ab1: 5y8a B:40-305 [340183]
        Other proteins in same PDB: d5y8aa2, d5y8ab2
        automated match to d2r7ab_
        complexed with ca, hem
  6. 2485131Candidatus liberibacter [TaxId:34021] [270653] (3 PDB entries)
    1. Domain for 4udn:
    2. Domain for 4udo:
    3. Domain for 5afs:
  7. 2485135Candidatus liberibacter [TaxId:537021] [270219] (2 PDB entries)
    1. Domain for 4cl2:
    2. Domain for 5zha:
  8. 2485137Escherichia coli [TaxId:562] [193890] (6 PDB entries)
    1. Domains for 2ogw:
      1. 2485140Domain d2ogwa_: 2ogw A: [205270]
        automated match to d2xqva_
        complexed with zn
      2. 2485141Domain d2ogwb_: 2ogw B: [205271]
        automated match to d2xqva_
        complexed with zn
    2. Domains for 2osv:
      1. 2485138Domain d2osva_: 2osv A: [198224]
        automated match to d2osvb_
        complexed with zn
      2. 2485139Domain d2osvb_: 2osv B: [193891]
        automated match to d2xy4a_
        complexed with zn
    3. Domains for 2prs:
      1. 2485142Domain d2prsa_: 2prs A: [205600]
        automated match to d2osvb_
        complexed with ipa, zn
      2. 2485143Domain d2prsb_: 2prs B: [205601]
        automated match to d2osvb_
        complexed with ipa, zn
    4. Domains for 2ps0:
      1. 2485144Domain d2ps0a_: 2ps0 A: [205602]
        automated match to d2osvb_
        complexed with zn
      2. 2485145Domain d2ps0b_: 2ps0 B: [205603]
        automated match to d2osvb_
        complexed with zn
    5. Domains for 2ps3:
      1. 2485148Domain d2ps3a_: 2ps3 A: [205612]
        automated match to d2osvb_
      2. 2485149Domain d2ps3b_: 2ps3 B: [205613]
        automated match to d2osvb_
    6. Domains for 2ps9:
      1. 2485146Domain d2ps9a_: 2ps9 A: [205624]
        automated match to d2osvb_
        complexed with co
      2. 2485147Domain d2ps9b_: 2ps9 B: [205625]
        automated match to d2osvb_
        complexed with co
  9. 2485150Escherichia coli [TaxId:83333] [256409] (3 PDB entries)
    1. Domain for 2m6k:
    2. Domain for 2m6l:
    3. Domains for 3tlk:
      1. 2485151Domain d3tlka1: 3tlk A:27-318 [265397]
        Other proteins in same PDB: d3tlka2, d3tlkc2
        automated match to d2m6ka_
        complexed with dio, eb4, fe
      2. 2485152Domain d3tlkb_: 3tlk B: [265398]
        Other proteins in same PDB: d3tlka2, d3tlkc2
        automated match to d2m6ka_
        complexed with dio, eb4, fe
      3. 2485153Domain d3tlkc1: 3tlk C:28-318 [265399]
        Other proteins in same PDB: d3tlka2, d3tlkc2
        automated match to d2m6ka_
        complexed with dio, eb4, fe
  10. 2485156Gluconacetobacter diazotrophicus [TaxId:272568] [322644] (2 PDB entries)
    1. Domains for 5koh:
      1. 2485157Domain d5kohb_: 5koh B: [323009]
        Other proteins in same PDB: d5koha_, d5kohc_
        automated match to d3u7qb_
        complexed with clf, fe, hca, ics, mpd, mrd
      2. 2485158Domain d5kohd_: 5koh D: [323003]
        Other proteins in same PDB: d5koha_, d5kohc_
        automated match to d3u7qb_
        complexed with clf, fe, hca, ics, mpd, mrd
    2. Domains for 5koj:
      1. 2485159Domain d5kojb_: 5koj B: [322645]
        Other proteins in same PDB: d5koja_, d5kojc_
        automated match to d3u7qb_
        complexed with clf, fe, hca, ics
      2. 2485160Domain d5kojd_: 5koj D: [322766]
        Other proteins in same PDB: d5koja_, d5kojc_
        automated match to d3u7qb_
        complexed with clf, fe, hca, ics
  11. 2485161Listeria monocytogenes [TaxId:169963] [314876] (3 PDB entries)
    1. Domain for 5hx7:
    2. Domain for 5i4k:
    3. Domain for 5jpd:
  12. 2485165Paracoccus denitrificans [TaxId:318586] [270856] (3 PDB entries)
    1. Domains for 5kzj:
      1. 2485168Domain d5kzja_: 5kzj A: [336492]
        automated match to d3hh8a_
        complexed with gol, zn; mutant
      2. 2485169Domain d5kzjb_: 5kzj B: [336518]
        automated match to d3hh8a_
        complexed with gol, zn; mutant
    2. Domains for 5w56:
      1. 2485166Domain d5w56a_: 5w56 A: [339363]
        automated match to d3hh8a_
        complexed with gol, na
      2. 2485167Domain d5w56b_: 5w56 B: [339364]
        automated match to d3hh8a_
        complexed with gol, na
    3. Domains for 5w57:
      1. 2485170Domain d5w57a_: 5w57 A: [339361]
        automated match to d3hh8a_
        complexed with zn
      2. 2485171Domain d5w57b_: 5w57 B: [339362]
        automated match to d3hh8a_
        complexed with zn
  13. 2485172Roseiflexus sp. [TaxId:357808] [335988] (2 PDB entries)
    1. Domain for 5gj3:
    2. Domain for 5y8b:
  14. 2485175Salmonella enterica [TaxId:28901] [228286] (1 PDB entry)
  15. 2485177Salmonella enterica [TaxId:90371] [226119] (1 PDB entry)
  16. 2485179Salmonella typhimurium [TaxId:90371] [189939] (2 PDB entries)
    1. Domain for 2xqv:
    2. Domain for 2xy4:
  17. 2485182Shigella dysenteriae [TaxId:622] [267803] (2 PDB entries)
    1. Domains for 2r7a:
      1. 2485187Domain d2r7aa_: 2r7a A: [264495]
        automated match to d4m7oa_
        complexed with hem
      2. 2485188Domain d2r7ab_: 2r7a B: [264496]
        automated match to d4m7oa_
        complexed with hem
      3. 2485189Domain d2r7ac_: 2r7a C: [264497]
        automated match to d4m7oa_
        complexed with hem
      4. 2485190Domain d2r7ad_: 2r7a D: [264498]
        automated match to d4m7oa_
        complexed with hem
    2. Domains for 2rg7:
      1. 2485183Domain d2rg7a_: 2rg7 A: [264501]
        automated match to d4m7oa_
      2. 2485184Domain d2rg7b_: 2rg7 B: [264502]
        automated match to d4m7oa_
      3. 2485185Domain d2rg7c_: 2rg7 C: [264503]
        automated match to d4m7oa_
      4. 2485186Domain d2rg7d_: 2rg7 D: [264504]
        automated match to d4m7oa_
  18. 2485191Staphylococcus aureus [TaxId:1280] [267935] (3 PDB entries)
    1. Domains for 4fil:
      1. 2485195Domain d4fila_: 4fil A: [266255]
        automated match to d3g9qa_
        complexed with 0ue, edo, zn
      2. 2485196Domain d4filb_: 4fil B: [266256]
        automated match to d3g9qa_
        complexed with 0ue, edo, zn
      3. 2485197Domain d4filc_: 4fil C: [266257]
        automated match to d3g9qa_
        complexed with 0ue, edo, zn
      4. 2485198Domain d4fild_: 4fil D: [266258]
        automated match to d3g9qa_
        complexed with 0ue, edo, zn
    2. Domains for 4fkm:
      1. 2485193Domain d4fkma_: 4fkm A: [266259]
        automated match to d3g9qa_
      2. 2485194Domain d4fkmb_: 4fkm B: [266260]
        automated match to d3g9qa_
    3. Domain for 5hdq:
  19. 2485199Staphylococcus aureus [TaxId:158878] [261218] (2 PDB entries)
    1. Domain for 4nno:
    2. Domains for 4nnp:
      1. 2485201Domain d4nnpa_: 4nnp A: [261510]
        Other proteins in same PDB: d4nnpl1, d4nnpl2, d4nnpy1, d4nnpy2
        automated match to d4k3va_
      2. 2485202Domain d4nnpb_: 4nnp B: [261511]
        Other proteins in same PDB: d4nnpl1, d4nnpl2, d4nnpy1, d4nnpy2
        automated match to d4k3va_
  20. 2485203Staphylococcus aureus [TaxId:158879] [225672] (3 PDB entries)
    1. Domain for 3eiw:
    2. Domain for 3eix:
    3. Domain for 3mwf:
  21. 2485207Staphylococcus aureus [TaxId:426430] [225834] (2 PDB entries)
    1. Domain for 3lhs:
    2. Domains for 3li2:
      1. 2485209Domain d3li2a1: 3li2 A:39-323 [212895]
        Other proteins in same PDB: d3li2a2, d3li2b2
        automated match to d3tefa_
        complexed with act, fe, sf8, zn
      2. 2485210Domain d3li2b1: 3li2 B:39-324 [212896]
        Other proteins in same PDB: d3li2a2, d3li2b2
        automated match to d3tefa_
        complexed with act, fe, sf8, zn
  22. 2485211Staphylococcus aureus [TaxId:869816] [235084] (1 PDB entry)
  23. 2485214Staphylococcus epidermidis [TaxId:176280] [256363] (1 PDB entry)
  24. 2485216Staphylococcus pseudintermedius [TaxId:283734] [260726] (2 PDB entries)
    1. Domains for 4oxq:
      1. 2485219Domain d4oxqa_: 4oxq A: [307965]
        automated match to d1xvla1
        complexed with zn
      2. 2485220Domain d4oxqb_: 4oxq B: [307966]
        automated match to d1xvla1
        complexed with zn
    2. Domains for 4oxr:
      1. 2485217Domain d4oxra_: 4oxr A: [260727]
        automated match to d1xvla1
        complexed with mn
      2. 2485218Domain d4oxrb_: 4oxr B: [300133]
        automated match to d1xvla1
        complexed with mn
  25. 2485221Streptococcus agalactiae [TaxId:1311] [196503] (1 PDB entry)
  26. 2485224Streptococcus agalactiae [TaxId:208435] [227693] (1 PDB entry)
  27. 2485227Streptococcus pneumoniae [TaxId:171101] [188513] (1 PDB entry)
  28. 2485230Streptococcus pneumoniae [TaxId:637987] [234961] (1 PDB entry)
  29. 2485232Streptococcus pyogenes [TaxId:1314] [196552] (1 PDB entry)
  30. 2485235Streptococcus suis [TaxId:391295] [189905] (1 PDB entry)
  31. 2485239Synechocystis sp. [TaxId:1148] [226531] (1 PDB entry)
  32. 2485243Vibrio cholerae [TaxId:345073] [330007] (2 PDB entries)
    1. Domains for 5ggy:
      1. 2485245Domain d5ggya1: 5ggy A:55-319 [330008]
        Other proteins in same PDB: d5ggya2, d5ggyn2
        automated match to d1efdn_
        complexed with cl
      2. 2485246Domain d5ggyn1: 5ggy N:55-318 [330036]
        Other proteins in same PDB: d5ggya2, d5ggyn2
        automated match to d1efdn_
        complexed with cl
    2. Domain for 5khl:
  33. 2485247Vibrio cholerae [TaxId:666] [193580] (3 PDB entries)
    1. Domain for 3r5s:
    2. Domain for 3r5t:
    3. Domain for 3tef:
  34. 2485251Yersinia pestis [TaxId:360102] [311322] (1 PDB entry)
  35. 2485254Yersinia pestis [TaxId:632] [311315] (1 PDB entry)
  36. 3058303Liberibacter asiaticus [TaxId:537021] [358365] (3 PDB entries)
    1. Domain for 5z2j:
    2. Domain for 5z2k:
    3. Domain for 5z35:

More info for Protein automated matches from c.92.2.0: automated matches

Timeline for Protein automated matches from c.92.2.0: automated matches: