SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2143226Fold c.92: Chelatase-like [53799] (3 superfamilies)
    duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134
  4. 2143333Superfamily c.92.2: "Helical backbone" metal receptor [53807] (5 families) (S)
    contains a long alpha helical insertion in the interdomain linker
  5. 2143580Family c.92.2.0: automated matches [191548] (1 protein)
    not a true family
  6. 2143581Protein automated matches [190944] (33 species)
    not a true protein

Species:

  1. 2143582Azotobacter vinelandii [TaxId:322710] [256020] (1 PDB entry)
  2. 2143587Bacillus cereus [TaxId:1396] [233693] (1 PDB entry)
  3. 2143589Bacillus subtilis [TaxId:1423] [193874] (1 PDB entry)
  4. 2143592Bacillus subtilis [TaxId:224308] [232282] (2 PDB entries)
    1. Domain for 3g9q:
    2. Domains for 3gfv:
      1. 2143593Domain d3gfva1: 3gfv A:14-297 [232283]
        Other proteins in same PDB: d3gfva2, d3gfvb2
        automated match to d3tefa_
        complexed with asn, po4
      2. 2143594Domain d3gfvb1: 3gfv B:14-297 [239320]
        Other proteins in same PDB: d3gfva2, d3gfvb2
        automated match to d3gfva_
        complexed with asn, po4
  5. 2143596Candidatus liberibacter [TaxId:34021] [270653] (3 PDB entries)
    1. Domain for 4udn:
    2. Domain for 4udo:
    3. Domain for 5afs:
  6. 2143599Candidatus liberibacter [TaxId:537021] [270219] (1 PDB entry)
  7. 2143601Escherichia coli [TaxId:562] [193890] (6 PDB entries)
    1. Domains for 2ogw:
      1. 2143606Domain d2ogwa_: 2ogw A: [205270]
        automated match to d2xqva_
        complexed with zn
      2. 2143607Domain d2ogwb_: 2ogw B: [205271]
        automated match to d2xqva_
        complexed with zn
    2. Domains for 2osv:
      1. 2143602Domain d2osva_: 2osv A: [198224]
        automated match to d2osvb_
        complexed with zn
      2. 2143603Domain d2osvb_: 2osv B: [193891]
        automated match to d2xy4a_
        complexed with zn
    3. Domains for 2prs:
      1. 2143604Domain d2prsa_: 2prs A: [205600]
        automated match to d2osvb_
        complexed with ipa, zn
      2. 2143605Domain d2prsb_: 2prs B: [205601]
        automated match to d2osvb_
        complexed with ipa, zn
    4. Domains for 2ps0:
      1. 2143608Domain d2ps0a_: 2ps0 A: [205602]
        automated match to d2osvb_
        complexed with zn
      2. 2143609Domain d2ps0b_: 2ps0 B: [205603]
        automated match to d2osvb_
        complexed with zn
    5. Domains for 2ps3:
      1. 2143612Domain d2ps3a_: 2ps3 A: [205612]
        automated match to d2osvb_
      2. 2143613Domain d2ps3b_: 2ps3 B: [205613]
        automated match to d2osvb_
    6. Domains for 2ps9:
      1. 2143610Domain d2ps9a_: 2ps9 A: [205624]
        automated match to d2osvb_
        complexed with co
      2. 2143611Domain d2ps9b_: 2ps9 B: [205625]
        automated match to d2osvb_
        complexed with co
  8. 2143614Escherichia coli [TaxId:83333] [256409] (3 PDB entries)
    1. Domain for 2m6k:
    2. Domain for 2m6l:
    3. Domains for 3tlk:
      1. 2143615Domain d3tlka1: 3tlk A:27-318 [265397]
        Other proteins in same PDB: d3tlka2, d3tlkc2
        automated match to d2m6ka_
        complexed with dio, eb4, fe
      2. 2143616Domain d3tlkb_: 3tlk B: [265398]
        Other proteins in same PDB: d3tlka2, d3tlkc2
        automated match to d2m6ka_
        complexed with dio, eb4, fe
      3. 2143617Domain d3tlkc1: 3tlk C:28-318 [265399]
        Other proteins in same PDB: d3tlka2, d3tlkc2
        automated match to d2m6ka_
        complexed with dio, eb4, fe
  9. 2143620Paracoccus denitrificans [TaxId:318586] [270856] (1 PDB entry)
  10. 2143623Salmonella enterica [TaxId:28901] [228286] (1 PDB entry)
  11. 2143625Salmonella enterica [TaxId:90371] [226119] (1 PDB entry)
  12. 2143627Salmonella typhimurium [TaxId:90371] [189939] (2 PDB entries)
    1. Domain for 2xqv:
    2. Domain for 2xy4:
  13. 2143630Shigella dysenteriae [TaxId:622] [267803] (2 PDB entries)
    1. Domains for 2r7a:
      1. 2143635Domain d2r7aa_: 2r7a A: [264495]
        automated match to d4m7oa_
        complexed with hem
      2. 2143636Domain d2r7ab_: 2r7a B: [264496]
        automated match to d4m7oa_
        complexed with hem
      3. 2143637Domain d2r7ac_: 2r7a C: [264497]
        automated match to d4m7oa_
        complexed with hem
      4. 2143638Domain d2r7ad_: 2r7a D: [264498]
        automated match to d4m7oa_
        complexed with hem
    2. Domains for 2rg7:
      1. 2143631Domain d2rg7a_: 2rg7 A: [264501]
        automated match to d4m7oa_
      2. 2143632Domain d2rg7b_: 2rg7 B: [264502]
        automated match to d4m7oa_
      3. 2143633Domain d2rg7c_: 2rg7 C: [264503]
        automated match to d4m7oa_
      4. 2143634Domain d2rg7d_: 2rg7 D: [264504]
        automated match to d4m7oa_
  14. 2143639Staphylococcus aureus [TaxId:1280] [267935] (3 PDB entries)
    1. Domains for 4fil:
      1. 2143642Domain d4fila_: 4fil A: [266255]
        automated match to d3g9qa_
        complexed with 0ue, edo, zn
      2. 2143643Domain d4filb_: 4fil B: [266256]
        automated match to d3g9qa_
        complexed with 0ue, edo, zn
      3. 2143644Domain d4filc_: 4fil C: [266257]
        automated match to d3g9qa_
        complexed with 0ue, edo, zn
      4. 2143645Domain d4fild_: 4fil D: [266258]
        automated match to d3g9qa_
        complexed with 0ue, edo, zn
    2. Domains for 4fkm:
      1. 2143640Domain d4fkma_: 4fkm A: [266259]
        automated match to d3g9qa_
      2. 2143641Domain d4fkmb_: 4fkm B: [266260]
        automated match to d3g9qa_
    3. Domain for 5hdq:
  15. 2143646Staphylococcus aureus [TaxId:158878] [261218] (2 PDB entries)
    1. Domain for 4nno:
    2. Domains for 4nnp:
      1. 2143648Domain d4nnpa_: 4nnp A: [261510]
        Other proteins in same PDB: d4nnpl1, d4nnpl2, d4nnpy1, d4nnpy2
        automated match to d4k3va_
      2. 2143649Domain d4nnpb_: 4nnp B: [261511]
        Other proteins in same PDB: d4nnpl1, d4nnpl2, d4nnpy1, d4nnpy2
        automated match to d4k3va_
  16. 2143650Staphylococcus aureus [TaxId:158879] [225672] (3 PDB entries)
    1. Domain for 3eiw:
    2. Domain for 3eix:
    3. Domain for 3mwf:
  17. 2143654Staphylococcus aureus [TaxId:426430] [225834] (2 PDB entries)
    1. Domain for 3lhs:
    2. Domains for 3li2:
      1. 2143656Domain d3li2a1: 3li2 A:39-323 [212895]
        Other proteins in same PDB: d3li2a2, d3li2b2
        automated match to d3tefa_
        complexed with act, fe, sf8, zn
      2. 2143657Domain d3li2b1: 3li2 B:39-324 [212896]
        Other proteins in same PDB: d3li2a2, d3li2b2
        automated match to d3tefa_
        complexed with act, fe, sf8, zn
  18. 2143658Staphylococcus aureus [TaxId:869816] [235084] (1 PDB entry)
  19. 2143661Staphylococcus epidermidis [TaxId:176280] [256363] (1 PDB entry)
  20. 2143663Staphylococcus pseudintermedius [TaxId:283734] [260726] (2 PDB entries)
    1. Domains for 4oxq:
      1. 2143666Domain d4oxqa_: 4oxq A: [307965]
        automated match to d1xvla1
        complexed with zn
      2. 2143667Domain d4oxqb_: 4oxq B: [307966]
        automated match to d1xvla1
        complexed with zn
    2. Domains for 4oxr:
      1. 2143664Domain d4oxra_: 4oxr A: [260727]
        automated match to d1xvla1
        complexed with mn
      2. 2143665Domain d4oxrb_: 4oxr B: [300133]
        automated match to d1xvla1
        complexed with mn
  21. 2143668Streptococcus agalactiae [TaxId:1311] [196503] (1 PDB entry)
  22. 2143671Streptococcus agalactiae [TaxId:208435] [227693] (1 PDB entry)
  23. 2143674Streptococcus pneumoniae [TaxId:171101] [188513] (1 PDB entry)
  24. 2143677Streptococcus pneumoniae [TaxId:637987] [234961] (1 PDB entry)
  25. 2143679Streptococcus pyogenes [TaxId:1314] [196552] (1 PDB entry)
  26. 2143682Streptococcus suis [TaxId:391295] [189905] (1 PDB entry)
  27. 2143686Synechocystis sp. [TaxId:1148] [226531] (1 PDB entry)
  28. 2143690Vibrio cholerae [TaxId:666] [193580] (3 PDB entries)
    1. Domain for 3r5s:
    2. Domain for 3r5t:
    3. Domain for 3tef:
  29. 2143694Yersinia pestis [TaxId:360102] [311322] (1 PDB entry)
  30. 2143697Yersinia pestis [TaxId:632] [311315] (1 PDB entry)
  31. 2271575Listeria monocytogenes [TaxId:169963] [314876] (3 PDB entries)
    1. Domain for 5hx7:
    2. Domain for 5i4k:
    3. Domain for 5jpd:
  32. 2279343Gluconacetobacter diazotrophicus [TaxId:272568] [322644] (2 PDB entries)
    1. Domains for 5koh:
      1. 2279702Domain d5kohd_: 5koh D: [323003]
        Other proteins in same PDB: d5koha_, d5kohc_
        automated match to d3u7qb_
        complexed with clf, fe, hca, ics, mpd, mrd
      2. 2279708Domain d5kohb_: 5koh B: [323009]
        Other proteins in same PDB: d5koha_, d5kohc_
        automated match to d3u7qb_
        complexed with clf, fe, hca, ics, mpd, mrd
    2. Domains for 5koj:
      1. 2279344Domain d5kojb_: 5koj B: [322645]
        Other proteins in same PDB: d5koja_, d5kojc_
        automated match to d3u7qb_
        complexed with clf, fe, hca, ics
      2. 2279465Domain d5kojd_: 5koj D: [322766]
        Other proteins in same PDB: d5koja_, d5kojc_
        automated match to d3u7qb_
        complexed with clf, fe, hca, ics
  33. 2286706Vibrio cholerae [TaxId:345073] [330007] (2 PDB entries)
    1. Domains for 5ggy:
      1. 2286707Domain d5ggya1: 5ggy A:55-319 [330008]
        Other proteins in same PDB: d5ggya2, d5ggyn2
        automated match to d1efdn_
        complexed with cl
      2. 2286735Domain d5ggyn1: 5ggy N:55-318 [330036]
        Other proteins in same PDB: d5ggya2, d5ggyn2
        automated match to d1efdn_
        complexed with cl
    2. Domain for 5khl:

More info for Protein automated matches from c.92.2.0: automated matches

Timeline for Protein automated matches from c.92.2.0: automated matches: