SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2213792Fold d.224: SufE/NifU [82648] (1 superfamily)
    alpha(2)-beta(3)-alpha(3); 2 layers alpha/beta, 3-stranded antiparallel beta-sheet; order 123
  4. 2213793Superfamily d.224.1: SufE/NifU [82649] (4 families) (S)
    iron-sulfur cluster assembly proteins
  5. 2213847Family d.224.1.0: automated matches [191547] (1 protein)
    not a true family
  6. 2213848Protein automated matches [190942] (5 species)
    not a true protein

Species:

  1. 2213849Aquifex aeolicus [TaxId:63363] [225504] (1 PDB entry)
  2. 2213853Archaeoglobus fulgidus [TaxId:224325] [226363] (2 PDB entries)
    1. Domains for 4eb5:
      1. 2213854Domain d4eb5c_: 4eb5 C: [220401]
        Other proteins in same PDB: d4eb5a_, d4eb5b_
        automated match to d1r9pa_
        complexed with epe, fes, gol, plp
      2. 2213855Domain d4eb5d_: 4eb5 D: [220402]
        Other proteins in same PDB: d4eb5a_, d4eb5b_
        automated match to d1r9pa_
        complexed with epe, fes, gol, plp
    2. Domain for 4eb7:
  3. 2213857Thermus thermophilus [TaxId:274] [188505] (1 PDB entry)
  4. 2285847Brucella abortus [TaxId:359391] [329148] (1 PDB entry)
  5. 2287680Enterococcus faecalis [TaxId:226185] [330981] (5 PDB entries)
    1. Domain for 5iby:
    2. Domains for 5ich:
      1. 2287681Domain d5icha2: 5ich A:248-334 [330982]
        Other proteins in same PDB: d5icha1, d5icha3, d5ichb1, d5ichb3
        automated match to d1vqza1
        complexed with sh5
      2. 2288104Domain d5ichb2: 5ich B:248-334 [331405]
        Other proteins in same PDB: d5icha1, d5icha3, d5ichb1, d5ichb3
        automated match to d1vqza1
    3. Domains for 5icl:
      1. 2287753Domain d5icla2: 5icl A:248-334 [331054]
        Other proteins in same PDB: d5icla1, d5icla3, d5iclb1, d5iclb3
        automated match to d1vqza1
        complexed with laq
      2. 2287948Domain d5iclb2: 5icl B:248-334 [331249]
        Other proteins in same PDB: d5icla1, d5icla3, d5iclb1, d5iclb3
        automated match to d1vqza1
        complexed with laq
    4. Domain for 5idh:
    5. Domain for 5ij6:

More info for Protein automated matches from d.224.1.0: automated matches

Timeline for Protein automated matches from d.224.1.0: automated matches: