Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2525085Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
    core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
  4. 2525086Superfamily d.79.1: YjgF-like [55298] (3 families) (S)
    forms trimers with three closely packed beta-sheets; possibly related to the IspF (d.79.5) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)
  5. 2525290Family d.79.1.0: automated matches [191544] (1 protein)
    not a true family
  6. 2525291Protein automated matches [190935] (14 species)
    not a true protein

Species:

  1. 2525292Agrobacterium tumefaciens [TaxId:176299] [188481] (1 PDB entry)
  2. 2525305Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [226153] (1 PDB entry)
  3. 2525307Entamoeba (Entamoeba histolytica) [TaxId:5759] [225891] (1 PDB entry)
  4. 2525314Entamoeba histolytica [TaxId:294381] [225859] (2 PDB entries)
    1. Domain for 3m1x:
    2. Domains for 3m4s:
      1. 2525316Domain d3m4sa_: 3m4s A: [213126]
        automated match to d3v4dc_
        complexed with cl
      2. 2525317Domain d3m4sb_: 3m4s B: [213127]
        automated match to d3v4dc_
        complexed with cl
      3. 2525318Domain d3m4sc_: 3m4s C: [213128]
        automated match to d3v4dc_
        complexed with cl
      4. 2525319Domain d3m4sd_: 3m4s D: [213129]
        automated match to d3v4dc_
        complexed with cl
      5. 2525320Domain d3m4se_: 3m4s E: [213130]
        automated match to d3v4dc_
        complexed with cl
      6. 2525321Domain d3m4sf_: 3m4s F: [213131]
        automated match to d3v4dc_
        complexed with cl
  5. 2525322Escherichia coli [TaxId:217992] [196085] (1 PDB entry)
  6. 2525329Mycobacterium tuberculosis [TaxId:83332] [225825] (1 PDB entry)
  7. 2525331Neisseria meningitidis [TaxId:491] [346368] (2 PDB entries)
    1. Domains for 3kjj:
      1. 2525332Domain d3kjja1: 3kjj A:1-116 [344863]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      2. 2525333Domain d3kjjb1: 3kjj B:1-117 [344865]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      3. 2525334Domain d3kjjc1: 3kjj C:1-117 [344867]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      4. 2525335Domain d3kjjd1: 3kjj D:1-117 [344869]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      5. 2525336Domain d3kjje1: 3kjj E:1-115 [344871]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      6. 2525337Domain d3kjjf1: 3kjj F:1-116 [344873]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      7. 2525338Domain d3kjjg_: 3kjj G: [344875]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      8. 2525339Domain d3kjjh1: 3kjj H:1-115 [344876]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      9. 2525340Domain d3kjji_: 3kjj I: [344878]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      10. 2525341Domain d3kjjj1: 3kjj J:1-117 [344879]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      11. 2525342Domain d3kjjk1: 3kjj K:1-117 [344881]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
      12. 2525343Domain d3kjjl_: 3kjj L: [344883]
        Other proteins in same PDB: d3kjja2, d3kjjb2, d3kjjc2, d3kjjd2, d3kjje2, d3kjjf2, d3kjjh2, d3kjjj2, d3kjjk2
        automated match to d5hp7a_
        complexed with gol
    2. Domains for 3kjk:
      1. 2525344Domain d3kjka_: 3kjk A: [344884]
        automated match to d5hp7a_
      2. 2525345Domain d3kjkb_: 3kjk B: [344885]
        automated match to d5hp7a_
      3. 2525346Domain d3kjkc_: 3kjk C: [344886]
        automated match to d5hp7a_
      4. 2525347Domain d3kjkd_: 3kjk D: [344887]
        automated match to d5hp7a_
      5. 2525348Domain d3kjke_: 3kjk E: [344888]
        automated match to d5hp7a_
      6. 2525349Domain d3kjkf_: 3kjk F: [344889]
        automated match to d5hp7a_
      7. 2525350Domain d3kjkg_: 3kjk G: [344890]
        automated match to d5hp7a_
      8. 2525351Domain d3kjkh_: 3kjk H: [344891]
        automated match to d5hp7a_
      9. 2525352Domain d3kjki_: 3kjk I: [344892]
        automated match to d5hp7a_
      10. 2525353Domain d3kjkj_: 3kjk J: [344893]
        automated match to d5hp7a_
      11. 2525354Domain d3kjkk_: 3kjk K: [344894]
        automated match to d5hp7a_
      12. 2525355Domain d3kjkl_: 3kjk L: [344895]
        automated match to d5hp7a_
  8. 2525356Pseudomonas syringae [TaxId:323] [196440] (1 PDB entry)
  9. 2525360Rhodopseudomonas palustris [TaxId:1076] [189252] (1 PDB entry)
  10. 2525373Streptococcus mutans [TaxId:210007] [189584] (1 PDB entry)
  11. 2525383Thale cress (Arabidopsis thaliana) [TaxId:3702] [323904] (2 PDB entries)
    1. Domain for 5hp7:
    2. Domains for 5hp8:
      1. 2525385Domain d5hp8a_: 5hp8 A: [323905]
        automated match to d3l7qa_
        complexed with pyr
      2. 2525386Domain d5hp8b_: 5hp8 B: [323927]
        automated match to d3l7qa_
        complexed with pyr
      3. 2525387Domain d5hp8c_: 5hp8 C: [323920]
        automated match to d3l7qa_
        complexed with pyr
  12. 2525388uncultured organism [TaxId:155900] [189680] (1 PDB entry)
  13. 2525395Vibrio vulnificus [TaxId:216895] [226289] (1 PDB entry)
  14. 2525399Yersinia pestis [TaxId:632] [332774] (1 PDB entry)

More info for Protein automated matches from d.79.1.0: automated matches

Timeline for Protein automated matches from d.79.1.0: automated matches: