SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2180205Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
    core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
  4. 2180206Superfamily d.79.1: YjgF-like [55298] (3 families) (S)
    forms trimers with three closely packed beta-sheets; possibly related to the IspF (d.79.5) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)
  5. 2180410Family d.79.1.0: automated matches [191544] (1 protein)
    not a true family
  6. 2180411Protein automated matches [190935] (13 species)
    not a true protein

Species:

  1. 2180412Agrobacterium tumefaciens [TaxId:176299] [188481] (1 PDB entry)
  2. 2180425Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [226153] (1 PDB entry)
  3. 2180427Entamoeba (Entamoeba histolytica) [TaxId:5759] [225891] (1 PDB entry)
  4. 2180434Entamoeba histolytica [TaxId:294381] [225859] (2 PDB entries)
    1. Domain for 3m1x:
    2. Domains for 3m4s:
      1. 2180436Domain d3m4sa_: 3m4s A: [213126]
        automated match to d3v4dc_
        complexed with cl
      2. 2180437Domain d3m4sb_: 3m4s B: [213127]
        automated match to d3v4dc_
        complexed with cl
      3. 2180438Domain d3m4sc_: 3m4s C: [213128]
        automated match to d3v4dc_
        complexed with cl
      4. 2180439Domain d3m4sd_: 3m4s D: [213129]
        automated match to d3v4dc_
        complexed with cl
      5. 2180440Domain d3m4se_: 3m4s E: [213130]
        automated match to d3v4dc_
        complexed with cl
      6. 2180441Domain d3m4sf_: 3m4s F: [213131]
        automated match to d3v4dc_
        complexed with cl
  5. 2180442Escherichia coli [TaxId:217992] [196085] (1 PDB entry)
  6. 2180449Mycobacterium tuberculosis [TaxId:83332] [225825] (1 PDB entry)
  7. 2180451Pseudomonas syringae [TaxId:323] [196440] (1 PDB entry)
  8. 2180455Rhodopseudomonas palustris [TaxId:1076] [189252] (1 PDB entry)
  9. 2180468Streptococcus mutans [TaxId:210007] [189584] (1 PDB entry)
  10. 2180478uncultured organism [TaxId:155900] [189680] (1 PDB entry)
  11. 2180485Vibrio vulnificus [TaxId:216895] [226289] (1 PDB entry)
  12. 2280603Arabidopsis thaliana [TaxId:3702] [323904] (2 PDB entries)
    1. Domain for 5hp7:
    2. Domains for 5hp8:
      1. 2280604Domain d5hp8a_: 5hp8 A: [323905]
        automated match to d3l7qa_
        complexed with pyr
      2. 2280619Domain d5hp8c_: 5hp8 C: [323920]
        automated match to d3l7qa_
        complexed with pyr
      3. 2280626Domain d5hp8b_: 5hp8 B: [323927]
        automated match to d3l7qa_
        complexed with pyr
  13. 2289473Yersinia pestis [TaxId:632] [332774] (1 PDB entry)

More info for Protein automated matches from d.79.1.0: automated matches

Timeline for Protein automated matches from d.79.1.0: automated matches: