SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2012910Fold a.139: Type I dockerin domain [63445] (1 superfamily)
    tandem repeat of two calcium-binding loop-helix motifs, distinct from the EF-hand
  4. 2012911Superfamily a.139.1: Type I dockerin domain [63446] (2 families) (S)
  5. 2012929Family a.139.1.0: automated matches [191542] (1 protein)
    not a true family
  6. 2012930Protein automated matches [190928] (7 species)
    not a true protein

Species:

  1. 2012931Acetivibrio cellulolyticus [TaxId:35830] [271532] (4 PDB entries)
    1. Domain for 4u3s:
    2. Domains for 4uyp:
      1. 2012932Domain d4uypb_: 4uyp B: [301038]
        Other proteins in same PDB: d4uypa1, d4uypa2, d4uypa3, d4uypc1, d4uypc2, d4uypc3
        automated match to d4uyqb_
        complexed with ca, epe, mpd, so4; mutant
      2. 2012933Domain d4uypd_: 4uyp D: [301041]
        Other proteins in same PDB: d4uypa1, d4uypa2, d4uypa3, d4uypc1, d4uypc2, d4uypc3
        automated match to d4uyqb_
        complexed with ca, epe, mpd, so4; mutant
    3. Domain for 4uyq:
    4. Domain for 4wi0:
  2. 2012937Bacteroides cellulosolvens [TaxId:35825] [189868] (1 PDB entry)
  3. 2012940Clostridium cellulolyticum [TaxId:1521] [188438] (2 PDB entries)
    1. Domains for 2vn5:
      1. 2012942Domain d2vn5b_: 2vn5 B: [161584]
        Other proteins in same PDB: d2vn5a_, d2vn5c_
        automated match to d1daqa_
        complexed with ca
      2. 2012943Domain d2vn5d_: 2vn5 D: [161585]
        Other proteins in same PDB: d2vn5a_, d2vn5c_
        automated match to d1daqa_
        complexed with ca
    2. Domain for 2vn6:
  4. 2012944Clostridium thermocellum [TaxId:1515] [256259] (1 PDB entry)
  5. 2012949Clostridium thermocellum [TaxId:203119] [194257] (3 PDB entries)
    1. Domain for 3ul4:
    2. Domains for 4dh2:
      1. 2012950Domain d4dh2b_: 4dh2 B: [262692]
        Other proteins in same PDB: d4dh2a1, d4dh2a2, d4dh2c1, d4dh2c2
        automated match to d4fl4g_
        complexed with ca, so4
      2. 2012951Domain d4dh2d_: 4dh2 D: [262693]
        Other proteins in same PDB: d4dh2a1, d4dh2a2, d4dh2c1, d4dh2c2
        automated match to d4fl4g_
        complexed with ca, so4
    3. Domain for 5g5d:
  6. 2012953Clostridium thermocellum [TaxId:492476] [311325] (1 PDB entry)
  7. 2289077Clostridium thermocellum [TaxId:1249482] [332378] (1 PDB entry)

More info for Protein automated matches from a.139.1.0: automated matches

Timeline for Protein automated matches from a.139.1.0: automated matches: