Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1287432Class b: All beta proteins [48724] (174 folds)
  3. 1312761Fold b.38: Sm-like fold [50181] (5 superfamilies)
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. 1312762Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families) (S)
  5. 1313271Family b.38.1.0: automated matches [191538] (1 protein)
    not a true family
  6. 1313272Protein automated matches [190914] (7 species)
    not a true protein

Species:

  1. 1313273African clawed frog (Xenopus laevis) [TaxId:8355] [224863] (1 PDB entry)
  2. 1313276Bacillus subtilis [TaxId:1423] [189371] (2 PDB entries)
    1. Domains for 3ahu:
      1. 1313278Domain d3ahua_: 3ahu A: [198870]
        automated match to d3hsbd_
        protein/RNA complex
      2. 1313279Domain d3ahub_: 3ahu B: [198871]
        automated match to d3hsbd_
        protein/RNA complex
      3. 1313280Domain d3ahuc_: 3ahu C: [193699]
        automated match to d3hsbd_
        protein/RNA complex
    2. Domain for 3hsb:
  3. 1313281Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188389] (4 PDB entries)
    1. Domains for 3bw1:
      1. 1313282Domain d3bw1a_: 3bw1 A: [172872]
        automated match to d1i81d_
        complexed with mpd, so4
      2. 1313283Domain d3bw1b_: 3bw1 B: [172873]
        automated match to d1i81d_
        complexed with mpd, so4
    2. Domains for 4c92:
      1. 1313284Domain d4c92c_: 4c92 C: [228296]
        automated match to d3bw1a_
        protein/RNA complex
      2. 1313285Domain d4c92d_: 4c92 D: [234294]
        automated match to d4m78n_
        protein/RNA complex
      3. 1313286Domain d4c92e_: 4c92 E: [228295]
        automated match to d3swna_
        protein/RNA complex
      4. 1313287Domain d4c92f_: 4c92 F: [228294]
        automated match to d3swnb_
        protein/RNA complex
    3. Domains for 4m75:
      1. 1313292Domain d4m75d_: 4m75 D: [235535]
        automated match to d4c92f_
        protein/RNA complex; complexed with cl
      2. 1313293Domain d4m75e_: 4m75 E: [235536]
        automated match to d4c92e_
        protein/RNA complex; complexed with cl
      3. 1313294Domain d4m75k_: 4m75 K: [235537]
        automated match to d4c92f_
        protein/RNA complex; complexed with cl
      4. 1313295Domain d4m75l_: 4m75 L: [235539]
        automated match to d4c92e_
        protein/RNA complex; complexed with cl
    4. Domains for 4m78:
      1. 1313288Domain d4m78d_: 4m78 D: [229669]
        automated match to d4c92f_
        protein/RNA complex
      2. 1313289Domain d4m78e_: 4m78 E: [229670]
        automated match to d4c92e_
        protein/RNA complex
      3. 1313290Domain d4m78k_: 4m78 K: [229674]
        automated match to d4c92f_
        protein/RNA complex
      4. 1313291Domain d4m78l_: 4m78 L: [229672]
        automated match to d4c92e_
        protein/RNA complex
  4. 1313296Human (Homo sapiens) [TaxId:9606] [196227] (1 PDB entry)
  5. 1313299Mouse (Mus musculus) [TaxId:10090] [226575] (1 PDB entry)
  6. 1313302Saccharomyces cerevisiae [TaxId:559292] [228531] (2 PDB entries)
    1. Domains for 4m75:
      1. 1313309Domain d4m75b_: 4m75 B: [235534]
        automated match to d4m78n_
        protein/RNA complex; complexed with cl
      2. 1313310Domain d4m75c_: 4m75 C: [228532]
        automated match to d3bw1a_
        protein/RNA complex; complexed with cl
      3. 1313311Domain d4m75i_: 4m75 I: [237059]
        automated match to d4m75b_
        protein/RNA complex; complexed with cl
      4. 1313312Domain d4m75j_: 4m75 J: [235538]
        automated match to d4m78c_
        protein/RNA complex; complexed with cl
    2. Domains for 4m78:
      1. 1313303Domain d4m78b_: 4m78 B: [237060]
        automated match to d4m75b_
        protein/RNA complex
      2. 1313304Domain d4m78c_: 4m78 C: [229671]
        automated match to d4m75c_
        protein/RNA complex
      3. 1313305Domain d4m78g_: 4m78 G: [228974]
        automated match to d1d3bc_
        protein/RNA complex
      4. 1313306Domain d4m78i_: 4m78 I: [237061]
        automated match to d4m75b_
        protein/RNA complex
      5. 1313307Domain d4m78j_: 4m78 J: [229673]
        automated match to d4m75c_
        protein/RNA complex
      6. 1313308Domain d4m78n_: 4m78 N: [228975]
        automated match to d1d3bc_
        protein/RNA complex
  7. 1313313Schizosaccharomyces pombe [TaxId:284812] [189773] (4 PDB entries)
    1. Domains for 3swn:
      1. 1313322Domain d3swna_: 3swn A: [185569]
        automated match to d2fwka1
        protein/RNA complex; complexed with zn
      2. 1313323Domain d3swnb_: 3swn B: [185570]
        automated match to d1n9sc_
        protein/RNA complex; complexed with zn
      3. 1313324Domain d3swnd_: 3swn D: [185571]
        automated match to d2fwka1
        protein/RNA complex; complexed with zn
      4. 1313325Domain d3swne_: 3swn E: [185572]
        automated match to d1n9sc_
        protein/RNA complex; complexed with zn
      5. 1313326Domain d3swnp_: 3swn P: [185573]
        automated match to d2fwka1
        protein/RNA complex; complexed with zn
      6. 1313327Domain d3swnq_: 3swn Q: [185574]
        automated match to d1n9sc_
        protein/RNA complex; complexed with zn
      7. 1313328Domain d3swns_: 3swn S: [185575]
        automated match to d2fwka1
        protein/RNA complex; complexed with zn
      8. 1313329Domain d3swnt_: 3swn T: [185576]
        automated match to d1n9sc_
        protein/RNA complex; complexed with zn
    2. Domains for 4emg:
      1. 1313330Domain d4emga_: 4emg A: [195155]
        automated match to d3bw1a_
      2. 1313331Domain d4emgb_: 4emg B: [195153]
        automated match to d3bw1a_
      3. 1313332Domain d4emgc_: 4emg C: [195152]
        automated match to d3bw1a_
      4. 1313333Domain d4emgd_: 4emg D: [195158]
        automated match to d3bw1a_
      5. 1313334Domain d4emge_: 4emg E: [195157]
        automated match to d3bw1a_
      6. 1313335Domain d4emgf_: 4emg F: [195156]
        automated match to d3bw1a_
      7. 1313336Domain d4emgg_: 4emg G: [195154]
        automated match to d3bw1a_
      8. 1313337Domain d4emgh_: 4emg H: [195148]
        automated match to d3bw1a_
      9. 1313338Domain d4emgi_: 4emg I: [195144]
        automated match to d3bw1a_
      10. 1313339Domain d4emgj_: 4emg J: [195147]
        automated match to d3bw1a_
      11. 1313340Domain d4emgk_: 4emg K: [195146]
        automated match to d3bw1a_
      12. 1313341Domain d4emgl_: 4emg L: [195151]
        automated match to d3bw1a_
      13. 1313342Domain d4emgm_: 4emg M: [195150]
        automated match to d3bw1a_
      14. 1313343Domain d4emgn_: 4emg N: [195149]
        automated match to d3bw1a_
    3. Domains for 4emh:
      1. 1313314Domain d4emha_: 4emh A: [234395]
        automated match to d4m78n_
      2. 1313315Domain d4emhb_: 4emh B: [234394]
        automated match to d4m78n_
      3. 1313316Domain d4emhc_: 4emh C: [234396]
        automated match to d4m78n_
      4. 1313317Domain d4emhd_: 4emh D: [234397]
        automated match to d4m78n_
      5. 1313318Domain d4emhe_: 4emh E: [234398]
        automated match to d4m78n_
      6. 1313319Domain d4emhf_: 4emh F: [234399]
        automated match to d4m78n_
    4. Domains for 4emk:
      1. 1313320Domain d4emka_: 4emk A: [195160]
        automated match to d3swna_
      2. 1313321Domain d4emkb_: 4emk B: [195159]
        automated match to d3swnq_

More info for Protein automated matches from b.38.1.0: automated matches

Timeline for Protein automated matches from b.38.1.0: automated matches: