Species:

1. Enterobacter sp. [TaxId:211595] [189872] (13 PDB entries)

   1. Domains for 3clc:

      1. Domain d3clca_: 3clc A: [173309] automated match to d2b5ad1 protein/DNA complex; complexed with mg

      2. Domain d3clcb_: 3clc B: [173310] automated match to d2b5ad1 protein/DNA complex; complexed with mg

      3. Domain d3clcc_: 3clc C: [173311] automated match to d2b5ad1 protein/DNA complex; complexed with mg

      4. Domain d3clcd_: 3clc D: [173312] automated match to d2b5ad1 protein/DNA complex; complexed with mg

   2. Domains for 3fya:

      1. Domain d3fyaa_: 3fya A: [246198] automated match to d4i6ua_ mutant

      2. Domain d3fyab_: 3fya B: [246199] automated match to d4i6ua_ mutant

   3. Domains for 3g5g:

      1. Domain d3g5ga_: 3g5g A: [210383] automated match to d4f8da_

      2. Domain d3g5gb_: 3g5g B: [210384] automated match to d4f8da_

      3. Domain d3g5gc_: 3g5g C: [210385] automated match to d4f8da_

      4. Domain d3g5gd_: 3g5g D: [210386] automated match to d4f8da_

      5. Domain d3g5ge_: 3g5g E: [210387] automated match to d4f8da_

      6. Domain d3g5gf_: 3g5g F: [210388] automated match to d4f8da_

      7. Domain d3g5gg_: 3g5g G: [210389] automated match to d4f8da_

      8. Domain d3g5gh_: 3g5g H: [210390] automated match to d4f8da_

      9. Domain d3g5gi_: 3g5g I: [210391] automated match to d4f8da_

      10. Domain d3g5gj_: 3g5g J: [210392] automated match to d4f8da_

      11. Domain d3g5gk_: 3g5g K: [210393] automated match to d4f8da_

      12. Domain d3g5gl_: 3g5g L: [210394] automated match to d4f8da_

      13. Domain d3g5gm_: 3g5g M: [210395] automated match to d4f8da_

      14. Domain d3g5gn_: 3g5g N: [210396] automated match to d4f8da_

   4. Domains for 3s8q:

      1. Domain d3s8qa_: 3s8q A: [185316] automated match to d2b5ad1 protein/DNA complex

      2. Domain d3s8qb_: 3s8q B: [185317] automated match to d2b5ad1 protein/DNA complex

   5. Domains for 4f8d:

      1. Domain d4f8da_: 4f8d A: [196769] automated match to d3s8qb_ complexed with na, so4; mutant

      2. Domain d4f8db_: 4f8d B: [202020] automated match to d4f8da_ complexed with na, so4; mutant

   6. Domains for 4fbi:

      1. Domain d4fbia_: 4fbi A: [221102] automated match to d4f8da_ complexed with gol; mutant

      2. Domain d4fbib_: 4fbi B: [221103] automated match to d4f8da_ complexed with gol; mutant

      3. Domain d4fbic_: 4fbi C: [221104] automated match to d4f8da_ complexed with gol; mutant

      4. Domain d4fbid_: 4fbi D: [221105] automated match to d4f8da_ complexed with gol; mutant

   7. Domains for 4fn3:

      1. Domain d4fn3a_: 4fn3 A: [197160] automated match to d3s8qb_ complexed with so4; mutant

      2. Domain d4fn3b_: 4fn3 B: [197153] automated match to d3s8qb_ complexed with so4; mutant

   8. Domains for 4i6r:

      1. Domain d4i6ra_: 4i6r A: [228933] automated match to d3s8qb_ complexed with gol, so4

      2. Domain d4i6rb_: 4i6r B: [228932] automated match to d3s8qb_ complexed with gol, so4

   9. Domains for 4i6t:

      1. Domain d4i6ta_: 4i6t A: [234820] automated match to d4i6tb_ complexed with mli; mutant

      2. Domain d4i6tb_: 4i6t B: [228934] automated match to d3g5gb_ complexed with mli; mutant

   10. Domains for 4i6u:

       1. Domain d4i6ua_: 4i6u A: [234822] automated match to d4i6ue_ complexed with act, gol, na, peg; mutant

       2. Domain d4i6ub_: 4i6u B: [234821] automated match to d4i6ue_ complexed with act, gol, na, peg; mutant

       3. Domain d4i6uc_: 4i6u C: [234823] automated match to d4i6ue_ complexed with act, gol, na, peg; mutant

       4. Domain d4i6ud_: 4i6u D: [234824] automated match to d4i6ue_ complexed with act, gol, na, peg; mutant

       5. Domain d4i6ue_: 4i6u E: [228931] automated match to d3g5gb_ complexed with act, gol, na, peg; mutant

       6. Domain d4i6uf_: 4i6u F: [234825] automated match to d4i6ue_ complexed with act, gol, na, peg; mutant

   11. Domains for 4ia8:

       1. Domain d4ia8a_: 4ia8 A: [234841] automated match to d4ia8b_ complexed with so4; mutant

       2. Domain d4ia8b_: 4ia8 B: [229588] automated match to d3g5gb_ complexed with so4; mutant

   12. Domains for 4ivz:

       1. Domain d4ivza_: 4ivz A: [252728] automated match to d4i6ua_ protein/DNA complex; mutant

       2. Domain d4ivzb_: 4ivz B: [252729] automated match to d4i6ua_ protein/DNA complex; mutant

       3. Domain d4ivze_: 4ivz E: [252730] automated match to d4i6ua_ protein/DNA complex; mutant

       4. Domain d4ivzf_: 4ivz F: [252731] automated match to d4i6ua_ protein/DNA complex; mutant

   13. Domains for 4iwr:

       1. Domain d4iwra_: 4iwr A: [227872] automated match to d3clca_ protein/DNA complex

       2. Domain d4iwrb_: 4iwr B: [227873] automated match to d3clca_ protein/DNA complex

       3. Domain d4iwre_: 4iwr E: [227870] automated match to d3clca_ protein/DNA complex

       4. Domain d4iwrf_: 4iwr F: [227871] automated match to d3clca_ protein/DNA complex

2. Enterococcus faecalis [TaxId:1351] [255039] (5 PDB entries)

   1. Domain for 2aw6:

      • Domain d2aw6b1: 2aw6 B:1-66 [127410] Other proteins in same PDB: d2aw6a1, d2aw6a2, d2aw6b2 automated match to d2awia1 protein/DNA complex

   2. Domains for 2axv:

      1. Domain d2axva1: 2axv A:2-66 [127524] Other proteins in same PDB: d2axva2, d2axvb2, d2axvc2, d2axvd2 automated match to d2awia1 mutant

      2. Domain d2axvb1: 2axv B:2-66 [127526] Other proteins in same PDB: d2axva2, d2axvb2, d2axvc2, d2axvd2 automated match to d2awia1 mutant

      3. Domain d2axvc1: 2axv C:2-66 [127528] Other proteins in same PDB: d2axva2, d2axvb2, d2axvc2, d2axvd2 automated match to d2awia1 mutant

      4. Domain d2axvd1: 2axv D:2-66 [127530] Other proteins in same PDB: d2axva2, d2axvb2, d2axvc2, d2axvd2 automated match to d2awia1 mutant

   3. Domains for 2axz:

      1. Domain d2axza1: 2axz A:1-66 [127536] Other proteins in same PDB: d2axza2, d2axzb2, d2axzc2, d2axzd2 automated match to d2awia1 protein/DNA complex

      2. Domain d2axzb1: 2axz B:1-66 [127538] Other proteins in same PDB: d2axza2, d2axzb2, d2axzc2, d2axzd2 automated match to d2awia1 protein/DNA complex

      3. Domain d2axzc1: 2axz C:2-66 [127540] Other proteins in same PDB: d2axza2, d2axzb2, d2axzc2, d2axzd2 automated match to d2awia1 protein/DNA complex

      4. Domain d2axzd1: 2axz D:1-66 [127542] Other proteins in same PDB: d2axza2, d2axzb2, d2axzc2, d2axzd2 automated match to d2awia1 protein/DNA complex

   4. Domains for 2grl:

      1. Domain d2grla1: 2grl A:1-66 [135560] Other proteins in same PDB: d2grla2, d2grlb2, d2grlc2, d2grld2 automated match to d2awia1

      2. Domain d2grlb1: 2grl B:1-66 [135562] Other proteins in same PDB: d2grla2, d2grlb2, d2grlc2, d2grld2 automated match to d2awia1

      3. Domain d2grlc1: 2grl C:1-66 [135564] Other proteins in same PDB: d2grla2, d2grlb2, d2grlc2, d2grld2 automated match to d2awia1

      4. Domain d2grld1: 2grl D:1-66 [135566] Other proteins in same PDB: d2grla2, d2grlb2, d2grlc2, d2grld2 automated match to d2awia1

   5. Domains for 2grm:

      1. Domain d2grmb1: 2grm B:1-66 [147163] Other proteins in same PDB: d2grma1, d2grma2, d2grmb2, d2grmc2 automated match to d2awia1

      2. Domain d2grmc1: 2grm C:1-66 [238649] Other proteins in same PDB: d2grma1, d2grma2, d2grmb2, d2grmc2 automated match to d2awia1

3. Escherichia coli [TaxId:362663] [255416] (2 PDB entries)

   1. Domain for 2l8n:

      • Domain d2l8na_: 2l8n A: [242810] automated match to d1prua_

   2. Domain for 2lcv:

      • Domain d2lcva_: 2lcv A: [264370] automated match to d2l8na_

4. Escherichia coli [TaxId:536056] [311441] (1 PDB entry)

   • Domains for 4rzs:

     1. Domain d4rzsa1: 4rzs A:3-51 [309619] Other proteins in same PDB: d4rzsa2, d4rzsb2, d4rzsc_, d4rzsd_ automated match to d1lbga1 complexed with gol

     2. Domain d4rzsb1: 4rzs B:3-60 [309621] Other proteins in same PDB: d4rzsa2, d4rzsb2, d4rzsc_, d4rzsd_ automated match to d1lbga1 complexed with gol

5. Escherichia coli [TaxId:562] [255139] (1 PDB entry)

   • Domains for 2eby:

     1. Domain d2ebya_: 2eby A: [262202] automated match to d2ebyb_ complexed with so4

     2. Domain d2ebyb_: 2eby B: [241718] automated match to d4mcxa_ complexed with so4

6. Mouse (Mus musculus) [TaxId:10090] [226005] (1 PDB entry)

   • Domain for 2xsd:

     • Domain d2xsdc1: 2xsd C:247-319 [207327] Other proteins in same PDB: d2xsdc2 automated match to d1cqta2 protein/DNA complex; complexed with edo

7. Mycobacterium smegmatis [TaxId:246196] [338077] (1 PDB entry)

   • Domain for 5woq:

     • Domain d5woqa_: 5woq A: [338078] automated match to d2b5ab_

8. Neisseria meningitidis [TaxId:122586] [256137] (1 PDB entry)

   • Domains for 3vk0:

     1. Domain d3vk0a_: 3vk0 A: [250565] automated match to d2b5ad_

     2. Domain d3vk0b_: 3vk0 B: [250566] automated match to d2b5ad_

     3. Domain d3vk0c_: 3vk0 C: [250567] automated match to d2b5ad_

9. Pseudomonas fluorescens [TaxId:220664] [188360] (1 PDB entry)

   • Domains for 2pij:

     1. Domain d2pija_: 2pij A: [167196] automated match to d1copd_ complexed with bct, dtt, so4

     2. Domain d2pijb_: 2pij B: [167197] automated match to d1copd_ complexed with bct, dtt, so4

10. Serratia proteamaculans [TaxId:399741] [271341] (2 PDB entries)

    1. Domains for 4y42:

       1. Domain d4y42a1: 4y42 A:2-86 [271342] Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2 automated match to d1dwka1 complexed with gol

       2. Domain d4y42b1: 4y42 B:2-86 [271357] Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2 automated match to d1dwka1 complexed with gol

       3. Domain d4y42c1: 4y42 C:2-86 [271355] Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2 automated match to d1dwka1 complexed with gol

       4. Domain d4y42d1: 4y42 D:2-86 [271353] Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2 automated match to d1dwka1 complexed with gol

       5. Domain d4y42e1: 4y42 E:2-86 [271361] Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2 automated match to d1dwka1 complexed with gol

       6. Domain d4y42f1: 4y42 F:2-86 [271363] Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2 automated match to d1dwka1 complexed with gol

       7. Domain d4y42g1: 4y42 G:2-86 [271359] Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2 automated match to d1dwka1 complexed with gol

       8. Domain d4y42h1: 4y42 H:2-86 [271365] Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2 automated match to d1dwka1 complexed with gol

       9. Domain d4y42i1: 4y42 I:2-86 [271367] Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2 automated match to d1dwka1 complexed with gol

       10. Domain d4y42j1: 4y42 J:2-86 [271369] Other proteins in same PDB: d4y42a2, d4y42b2, d4y42c2, d4y42d2, d4y42e2, d4y42f2, d4y42g2, d4y42h2, d4y42i2, d4y42j2 automated match to d1dwka1 complexed with gol

    2. Domains for 6b6m:

       1. Domain d6b6ma1: 6b6m A:2-86 [340374] Other proteins in same PDB: d6b6ma2, d6b6mb2, d6b6mc2, d6b6md2, d6b6me2 automated match to d4y42a1

       2. Domain d6b6mb1: 6b6m B:2-86 [340410] Other proteins in same PDB: d6b6ma2, d6b6mb2, d6b6mc2, d6b6md2, d6b6me2 automated match to d4y42a1

       3. Domain d6b6mc1: 6b6m C:2-86 [340393] Other proteins in same PDB: d6b6ma2, d6b6mb2, d6b6mc2, d6b6md2, d6b6me2 automated match to d4y42a1

       4. Domain d6b6md1: 6b6m D:2-86 [340425] Other proteins in same PDB: d6b6ma2, d6b6mb2, d6b6mc2, d6b6md2, d6b6me2 automated match to d4y42a1

       5. Domain d6b6me1: 6b6m E:2-86 [340401] Other proteins in same PDB: d6b6ma2, d6b6mb2, d6b6mc2, d6b6md2, d6b6me2 automated match to d4y42a1

More info for Protein automated matches from a.35.1.0: automated matches

Timeline for Protein automated matches from a.35.1.0: automated matches:

• Protein automated matches from a.35.1.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from a.35.1.0: automated matches appears in SCOPe 2.05
  
• Protein automated matches from a.35.1.0: automated matches appears in SCOPe 2.07
  
• Protein automated matches from a.35.1.0: automated matches appears in the current release, SCOPe 2.08