SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2181309Fold d.80: Tautomerase/MIF [55330] (1 superfamily)
    (beta-alpha-beta)2; 2 layers: alpha/beta; mixed beta-sheet
    generally forms trimers with three closely packed beta-sheets
  4. 2181310Superfamily d.80.1: Tautomerase/MIF [55331] (7 families) (S)
  5. 2181773Family d.80.1.0: automated matches [191533] (1 protein)
    not a true family
  6. 2181774Protein automated matches [190903] (18 species)
    not a true protein

Species:

  1. 2181775Ancylostoma ceylanicum [TaxId:53326] [188849] (3 PDB entries)
    1. Domains for 2os5:
      1. 2181776Domain d2os5a_: 2os5 A: [198221]
        automated match to d2os5d_
        complexed with so4
      2. 2181777Domain d2os5b_: 2os5 B: [198222]
        automated match to d2os5d_
        complexed with so4
      3. 2181778Domain d2os5c_: 2os5 C: [198223]
        automated match to d2os5d_
        complexed with so4
      4. 2181779Domain d2os5d_: 2os5 D: [166837]
        automated match to d1mffa_
        complexed with so4
    2. Domains for 3rf4:
      1. 2181780Domain d3rf4a_: 3rf4 A: [184931]
        automated match to d1mffa_
        complexed with act, fun, imd, zn
      2. 2181781Domain d3rf4b_: 3rf4 B: [184932]
        automated match to d1mffa_
        complexed with act, fun, imd, zn
      3. 2181782Domain d3rf4c_: 3rf4 C: [184933]
        automated match to d1mffa_
        complexed with act, fun, imd, zn
    3. Domains for 3rf5:
      1. 2181783Domain d3rf5a_: 3rf5 A: [184934]
        automated match to d1mffa_
        complexed with act, fuz, imd, zn
      2. 2181784Domain d3rf5b_: 3rf5 B: [184935]
        automated match to d1mffa_
        complexed with act, fuz, imd, zn
      3. 2181785Domain d3rf5c_: 3rf5 C: [184936]
        automated match to d1mffa_
        complexed with act, fuz, imd, zn
  2. 2181786Bacillus subtilis [TaxId:1423] [188341] (2 PDB entries)
    1. Domains for 2op8:
      1. 2181789Domain d2op8a_: 2op8 A: [166811]
        automated match to d1otfa_
      2. 2181790Domain d2op8b_: 2op8 B: [166812]
        automated match to d1otfa_
    2. Domains for 2opa:
      1. 2181787Domain d2opaa_: 2opa A: [166813]
        automated match to d1otfa_
        complexed with fhc
      2. 2181788Domain d2opab_: 2opa B: [166814]
        automated match to d1otfa_
        complexed with fhc
  3. 2181791Bordetella bronchiseptica [TaxId:257310] [256334] (1 PDB entry)
  4. 2181795Coryneform bacterium [TaxId:1728] [189898] (4 PDB entries)
    1. Domains for 3mjz:
      1. 2181818Domain d3mjza_: 3mjz A: [181309]
        automated match to d2aaga1
      2. 2181819Domain d3mjzb_: 3mjz B: [181310]
        automated match to d2aaga1
      3. 2181820Domain d3mjzc_: 3mjz C: [181311]
        automated match to d2aaga1
      4. 2181821Domain d3mjzd_: 3mjz D: [181312]
        automated match to d2aaga1
      5. 2181822Domain d3mjze_: 3mjz E: [181313]
        automated match to d2aaga1
      6. 2181823Domain d3mjzf_: 3mjz F: [181314]
        automated match to d2aaga1
      7. 2181824Domain d3mjzg_: 3mjz G: [181315]
        automated match to d2aaga1
      8. 2181825Domain d3mjzh_: 3mjz H: [181316]
        automated match to d2aaga1
      9. 2181826Domain d3mjzi_: 3mjz I: [181317]
        automated match to d2aaga1
      10. 2181827Domain d3mjzj_: 3mjz J: [181318]
        automated match to d2aaga1
      11. 2181828Domain d3mjzk_: 3mjz K: [181319]
        automated match to d2aaga1
      12. 2181829Domain d3mjzl_: 3mjz L: [181320]
        automated match to d2aaga1
    2. Domains for 3mlc:
      1. 2181813Domain d3mlca_: 3mlc A: [181380]
        automated match to d2aaga1
        complexed with pr6
      2. 2181814Domain d3mlcb_: 3mlc B: [181381]
        automated match to d2aaga1
        complexed with pr6
      3. 2181815Domain d3mlcc_: 3mlc C: [181382]
        automated match to d2aaga1
        complexed with pr6
      4. 2181816Domain d3mlcd_: 3mlc D: [181383]
        automated match to d2aaga1
        complexed with pr6
      5. 2181817Domain d3mlce_: 3mlc E: [181384]
        automated match to d2aaga1
        complexed with pr6
    3. Domains for 4lho:
      1. 2181808Domain d4lhoa_: 4lho A: [224668]
        automated match to d3mjza_
        complexed with po4, pr6
      2. 2181809Domain d4lhob_: 4lho B: [224669]
        automated match to d3mjza_
        complexed with po4, pr6
      3. 2181810Domain d4lhoc_: 4lho C: [224670]
        automated match to d3mjza_
        complexed with po4, pr6
      4. 2181811Domain d4lhod_: 4lho D: [224671]
        automated match to d3mjza_
        complexed with po4, pr6
      5. 2181812Domain d4lhoe_: 4lho E: [224672]
        automated match to d3mjza_
        complexed with po4, pr6
    4. Domains for 4lhp:
      1. 2181796Domain d4lhpa_: 4lhp A: [224673]
        automated match to d3mjza_
        complexed with po4, so4
      2. 2181797Domain d4lhpb_: 4lhp B: [224674]
        automated match to d3mjza_
        complexed with po4, so4
      3. 2181798Domain d4lhpc_: 4lhp C: [224675]
        automated match to d3mjza_
        complexed with po4, so4
      4. 2181799Domain d4lhpd_: 4lhp D: [224676]
        automated match to d3mjza_
        complexed with po4, so4
      5. 2181800Domain d4lhpe_: 4lhp E: [224677]
        automated match to d3mjza_
        complexed with po4, so4
      6. 2181801Domain d4lhpf_: 4lhp F: [224678]
        automated match to d3mjza_
        complexed with po4, so4
      7. 2181802Domain d4lhpg_: 4lhp G: [224679]
        automated match to d3mjza_
        complexed with po4, so4
      8. 2181803Domain d4lhph_: 4lhp H: [224680]
        automated match to d3mjza_
        complexed with po4, so4
      9. 2181804Domain d4lhpi_: 4lhp I: [224681]
        automated match to d3mjza_
        complexed with po4, so4
      10. 2181805Domain d4lhpj_: 4lhp J: [224682]
        automated match to d3mjza_
        complexed with po4, so4
      11. 2181806Domain d4lhpk_: 4lhp K: [224683]
        automated match to d3mjza_
        complexed with po4, so4
      12. 2181807Domain d4lhpl_: 4lhp L: [224684]
        automated match to d3mjza_
        complexed with po4, so4
  5. 2181830Deinococcus radiodurans [TaxId:243230] [234969] (1 PDB entry)
  6. 2181834Giardia lamblia [TaxId:184922] [226196] (1 PDB entry)
  7. 2181836Helicobacter pylori [TaxId:85963] [231104] (2 PDB entries)
    1. Domains for 2orm:
      1. 2181843Domain d2orma_: 2orm A: [231105]
        automated match to d4faza_
      2. 2181844Domain d2ormb_: 2orm B: [238785]
        automated match to d2orma_
      3. 2181845Domain d2ormc_: 2orm C: [238786]
        automated match to d2orma_
      4. 2181846Domain d2ormd_: 2orm D: [238787]
        automated match to d2orma_
      5. 2181847Domain d2orme_: 2orm E: [238788]
        automated match to d2orma_
      6. 2181848Domain d2ormf_: 2orm F: [238789]
        automated match to d2orma_
    2. Domains for 3m21:
      1. 2181837Domain d3m21a_: 3m21 A: [247579]
        automated match to d2orma_
      2. 2181838Domain d3m21b_: 3m21 B: [247580]
        automated match to d2orma_
      3. 2181839Domain d3m21c_: 3m21 C: [247581]
        automated match to d2orma_
      4. 2181840Domain d3m21d_: 3m21 D: [247582]
        automated match to d2orma_
      5. 2181841Domain d3m21e_: 3m21 E: [247583]
        automated match to d2orma_
      6. 2181842Domain d3m21f_: 3m21 F: [247584]
        automated match to d2orma_
  8. 2181849Leishmania major [TaxId:5664] [225634] (3 PDB entries)
    1. Domain for 3b64:
    2. Domain for 3fwt:
    3. Domain for 3fwu:
  9. 2181853Malaria parasite (Plasmodium falciparum) [TaxId:5833] [260351] (2 PDB entries)
    1. Domains for 4p7m:
      1. 2181857Domain d4p7ma_: 4p7m A: [260352]
        automated match to d2wkbe_
        complexed with 2oe
      2. 2181858Domain d4p7mb_: 4p7m B: [260353]
        automated match to d2wkbe_
        complexed with 2oe
      3. 2181859Domain d4p7mc_: 4p7m C: [263445]
        automated match to d4p7ma_
        complexed with 2oe
    2. Domains for 4p7s:
      1. 2181854Domain d4p7sa_: 4p7s A: [263446]
        automated match to d4p7ma_
        complexed with 2ok
      2. 2181855Domain d4p7sb_: 4p7s B: [260728]
        automated match to d2wkbe_
        complexed with 2ok
      3. 2181856Domain d4p7sc_: 4p7s C: [263447]
        automated match to d4p7ma_
        complexed with 2ok
  10. 2181860Methylibium petroleiphilum [TaxId:420662] [197231] (2 PDB entries)
    1. Domains for 4faz:
      1. 2181861Domain d4faza_: 4faz A: [197232]
        automated match to d1otfa_
        complexed with so4
      2. 2181862Domain d4fazb_: 4faz B: [202026]
        automated match to d4faza_
        complexed with so4
      3. 2181863Domain d4fazc_: 4faz C: [197233]
        automated match to d1otfa_
        complexed with so4
    2. Domains for 4fdx:
      1. 2181864Domain d4fdxa_: 4fdx A: [197298]
        automated match to d4otba_
      2. 2181865Domain d4fdxb_: 4fdx B: [202029]
        automated match to d4fdxa_
  11. 2181866Nostoc sp. [TaxId:103690] [256358] (1 PDB entry)
  12. 2181873Plasmodium berghei [TaxId:5823] [189095] (1 PDB entry)
  13. 2181880Plasmodium falciparum [TaxId:36329] [189094] (1 PDB entry)
  14. 2181883Prochlorococcus marinus [TaxId:74547] [189461] (1 PDB entry)
  15. 2181885Staphylococcus aureus [TaxId:1280] [189405] (1 PDB entry)
  16. 2181888Thermus thermophilus HB8 [TaxId:300852] [189563] (1 PDB entry)
  17. 2181895Toxoplasma gondii [TaxId:5811] [193044] (1 PDB entry)
  18. 2289437Burkholderia lata [TaxId:482957] [332738] (1 PDB entry)

More info for Protein automated matches from d.80.1.0: automated matches

Timeline for Protein automated matches from d.80.1.0: automated matches: