Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1650133Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 1652149Superfamily d.58.7: RNA-binding domain, RBD [54928] (6 families) (S)
  5. 1652682Family d.58.7.0: automated matches [191529] (1 protein)
    not a true family
  6. 1652683Protein automated matches [190896] (7 species)
    not a true protein

Species:

  1. 1652684Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189319] (7 PDB entries)
    1. Domains for 2km8:
      1. 1652692Domain d2km8b_: 2km8 B: [242561]
        automated match to d2x1ba_
        protein/RNA complex
      2. 1652693Domain d2km8c1: 2km8 C:156-241 [242562]
        automated match to d1u1qa1
        protein/RNA complex
      3. 1652694Domain d2km8c2: 2km8 C:242-322 [242563]
        automated match to d1u1qa2
        protein/RNA complex
    2. Domain for 2la4:
    3. Domain for 2x1a:
    4. Domain for 2x1b:
    5. Domain for 2x1f:
    6. Domains for 3md1:
      1. 1652685Domain d3md1a_: 3md1 A: [181013]
        automated match to d1x5sa1
        complexed with gol
      2. 1652686Domain d3md1b_: 3md1 B: [181014]
        automated match to d1x5sa1
        complexed with gol
    7. Domain for 4uqt:
  2. 1652695Caenorhabditis elegans [TaxId:6239] [258940] (1 PDB entry)
  3. 1652697Helicobacter pylori [TaxId:210] [255348] (1 PDB entry)
  4. 1652699Hordeum vulgare [TaxId:4513] [261791] (1 PDB entry)
  5. 1652701Human (Homo sapiens) [TaxId:9606] [188315] (59 PDB entries)
    1. Domain for 2d9p:
    2. Domain for 2dgp:
    3. Domain for 2dgq:
    4. Domain for 2dgs:
    5. Domain for 2dgt:
    6. Domain for 2dgu:
    7. Domain for 2dgv:
    8. Domain for 2dh8:
    9. Domain for 2dh9:
    10. Domain for 2dhg:
    11. Domain for 2div:
    12. Domain for 2dk2:
    13. Domain for 2dnh:
    14. Domain for 2dnk:
    15. Domain for 2dnm:
    16. Domain for 2dno:
    17. Domain for 2dnp:
    18. Domain for 2dnq:
    19. Domain for 2dny:
    20. Domain for 2do4:
    21. Domain for 2e5h:
    22. Domain for 2fc8:
    23. Domain for 2fc9:
    24. Domain for 2fho:
    25. Domain for 2hgm:
    26. Domain for 2k8g:
    27. Domain for 2kg0:
    28. Domain for 2la6:
    29. Domain for 2lcw:
    30. Domain for 2lea:
    31. Domain for 2leb:
    32. Domain for 2lec:
    33. Domain for 2lxi:
    34. Domain for 2m3d:
    35. Domain for 2mik:
    36. Domain for 2mil:
    37. Domain for 2mks:
    38. Domain for 2pe8:
    39. Domain for 2rra:
    40. Domain for 2rrb:
    41. Domain for 2ywk:
    42. Domain for 3b4d:
    43. Domains for 3b4m:
      1. 1652736Domain d3b4ma_: 3b4m A: [208517]
        automated match to d2cpea1
      2. 1652737Domain d3b4mb_: 3b4m B: [208518]
        automated match to d2cpea1
      3. 1652738Domain d3b4mc_: 3b4m C: [208519]
        automated match to d2cpea1
      4. 1652739Domain d3b4md_: 3b4m D: [208520]
        automated match to d2cpea1
    44. Domains for 3bs9:
      1. 1652729Domain d3bs9a_: 3bs9 A: [172805]
        automated match to d1x5sa1
        complexed with iod
      2. 1652730Domain d3bs9b_: 3bs9 B: [172806]
        automated match to d1x5sa1
        complexed with iod
    45. Domain for 3egn:
    46. Domains for 3hi9:
      1. 1652720Domain d3hi9a_: 3hi9 A: [211068]
        automated match to d1oo0b_
      2. 1652721Domain d3hi9b_: 3hi9 B: [211069]
        automated match to d1oo0b_
      3. 1652722Domain d3hi9c_: 3hi9 C: [211070]
        automated match to d1oo0b_
      4. 1652723Domain d3hi9d_: 3hi9 D: [211071]
        automated match to d1oo0b_
    47. Domains for 3r27:
      1. 1652731Domain d3r27a_: 3r27 A: [200430]
        automated match to d3r27b_
        complexed with gol
      2. 1652732Domain d3r27b_: 3r27 B: [196174]
        automated match to d1wexa_
        complexed with gol
    48. Domains for 3rw7:
      1. 1652743Domain d3rw7a1: 3rw7 A:118-199 [249238]
        Other proteins in same PDB: d3rw7a2, d3rw7b_, d3rw7c2, d3rw7d_
        automated match to d1kooa2
      2. 1652744Domain d3rw7c1: 3rw7 C:117-198 [249241]
        Other proteins in same PDB: d3rw7a2, d3rw7b_, d3rw7c2, d3rw7d_
        automated match to d1kooa2
    49. Domain for 3ucg:
    50. Domain for 3ue2:
    51. Domain for 3us5:
    52. Domain for 4a8x:
    53. Domains for 4cq1:
      1. 1652706Domain d4cq1a2: 4cq1 A:445-531 [237006]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      2. 1652707Domain d4cq1b2: 4cq1 B:445-531 [237000]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      3. 1652708Domain d4cq1c2: 4cq1 C:445-531 [237001]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      4. 1652709Domain d4cq1d2: 4cq1 D:445-531 [237005]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      5. 1652710Domain d4cq1e2: 4cq1 E:445-531 [237004]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      6. 1652711Domain d4cq1f2: 4cq1 F:445-531 [237003]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      7. 1652712Domain d4cq1g2: 4cq1 G:445-531 [236999]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      8. 1652713Domain d4cq1h2: 4cq1 H:445-531 [237002]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
    54. Domains for 4ed5:
      1. 1652724Domain d4ed5a1: 4ed5 A:18-99 [234372]
        automated match to d1fxla1
        protein/RNA complex; complexed with edo, gol, m2m
      2. 1652725Domain d4ed5a2: 4ed5 A:100-185 [234388]
        automated match to d1fxla2
        protein/RNA complex; complexed with edo, gol, m2m
      3. 1652726Domain d4ed5b1: 4ed5 B:18-99 [234373]
        automated match to d1fxla1
        protein/RNA complex; complexed with edo, gol, m2m
      4. 1652727Domain d4ed5b2: 4ed5 B:100-186 [234387]
        automated match to d1fxla2
        protein/RNA complex; complexed with edo, gol, m2m
    55. Domains for 4egl:
      1. 1652741Domain d4egla1: 4egl A:18-99 [234378]
        automated match to d1fxla1
        complexed with gol, so4
      2. 1652742Domain d4egla2: 4egl A:100-184 [234389]
        automated match to d1fxla2
        complexed with gol, so4
    56. Domain for 4f25:
    57. Domain for 4f26:
    58. Domains for 4fxv:
      1. 1652715Domain d4fxva_: 4fxv A: [221592]
        automated match to d2cpja1
      2. 1652716Domain d4fxvb_: 4fxv B: [221593]
        automated match to d2cpja1
      3. 1652717Domain d4fxvc_: 4fxv C: [221594]
        automated match to d2cpja1
      4. 1652718Domain d4fxvd_: 4fxv D: [221595]
        automated match to d2cpja1
    59. Domain for 4ljm:
  6. 1652784Mouse (Mus musculus) [TaxId:10090] [226227] (3 PDB entries)
    1. Domain for 2dng:
    2. Domain for 2e5i:
    3. Domain for 2xsf:
  7. 1652788Tobacco (Nicotiana tabacum) [TaxId:4097] [256225] (1 PDB entry)

More info for Protein automated matches from d.58.7.0: automated matches

Timeline for Protein automated matches from d.58.7.0: automated matches: