SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2174486Superfamily d.58.7: RNA-binding domain, RBD [54928] (6 families) (S)
  5. 2175050Family d.58.7.0: automated matches [191529] (1 protein)
    not a true family
  6. 2175051Protein automated matches [190896] (11 species)
    not a true protein

Species:

  1. 2175052Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189319] (9 PDB entries)
    1. Domains for 2km8:
      1. 2175062Domain d2km8b_: 2km8 B: [242561]
        automated match to d2x1ba_
        protein/RNA complex
      2. 2175063Domain d2km8c1: 2km8 C:156-241 [242562]
        automated match to d1u1qa1
        protein/RNA complex
      3. 2175064Domain d2km8c2: 2km8 C:242-322 [242563]
        automated match to d1u1qa2
        protein/RNA complex
    2. Domain for 2la4:
    3. Domain for 2x1a:
    4. Domain for 2x1b:
    5. Domain for 2x1f:
    6. Domains for 3md1:
      1. 2175053Domain d3md1a1: 3md1 A:161-240 [181013]
        Other proteins in same PDB: d3md1a2
        automated match to d1x5sa1
        complexed with gol
      2. 2175054Domain d3md1b_: 3md1 B: [181014]
        Other proteins in same PDB: d3md1a2
        automated match to d1x5sa1
        complexed with gol
    7. Domains for 3md3:
      1. 2175058Domain d3md3a1: 3md3 A:75-159 [265066]
        automated match to d1cvja1
        complexed with gol, so4
      2. 2175059Domain d3md3a2: 3md3 A:160-240 [265067]
        automated match to d1cvja1
        complexed with gol, so4
    8. Domain for 4uqt:
    9. Domains for 5lsl:
      1. 2289636Domain d5lsld_: 5lsl D: [332937]
        automated match to d3mdfa_
        protein/RNA complex
      2. 2289638Domain d5lslb_: 5lsl B: [332939]
        automated match to d3mdfa_
        protein/RNA complex
      3. 2289670Domain d5lsla_: 5lsl A: [332971]
        automated match to d3mdfa_
        protein/RNA complex
      4. 2289679Domain d5lslc_: 5lsl C: [332980]
        automated match to d3mdfa_
        protein/RNA complex
  2. 2175065Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [279753] (6 PDB entries)
    1. Domain for 2mzq:
    2. Domain for 2mzr:
    3. Domain for 2mzs:
    4. Domain for 5d77:
    5. Domain for 5d78:
    6. Domains for 5t9p:
      1. 2283028Domain d5t9pa_: 5t9p A: [326329]
        automated match to d1d8za_
        complexed with cl, so4
      2. 2283033Domain d5t9pd_: 5t9p D: [326334]
        automated match to d1d8za_
        complexed with cl, so4
  3. 2175069Barley (Hordeum vulgare) [TaxId:4513] [261791] (1 PDB entry)
  4. 2175071Helicobacter pylori [TaxId:210] [255348] (1 PDB entry)
  5. 2175073Human (Homo sapiens) [TaxId:9606] [188315] (84 PDB entries)
    1. Domain for 2d9p:
    2. Domain for 2dgp:
    3. Domain for 2dgq:
    4. Domain for 2dgs:
    5. Domain for 2dgt:
    6. Domain for 2dgu:
    7. Domain for 2dgv:
    8. Domain for 2dh8:
    9. Domain for 2dh9:
    10. Domain for 2dhg:
    11. Domain for 2div:
    12. Domain for 2dk2:
    13. Domain for 2dnh:
    14. Domain for 2dnk:
    15. Domain for 2dnm:
    16. Domain for 2dno:
    17. Domain for 2dnp:
    18. Domain for 2dnq:
    19. Domain for 2dny:
    20. Domain for 2do4:
    21. Domain for 2e5h:
    22. Domain for 2fc8:
    23. Domain for 2fc9:
    24. Domain for 2fho:
    25. Domain for 2hgl:
    26. Domain for 2hgm:
    27. Domain for 2k8g:
    28. Domain for 2kfy:
    29. Domain for 2kg0:
    30. Domains for 2kxf:
      1. 2175153Domain d2kxfa1: 2kxf A:102-200 [264362]
        Other proteins in same PDB: d2kxfa3
        automated match to d2mpua_
      2. 2175154Domain d2kxfa2: 2kxf A:201-297 [264363]
        Other proteins in same PDB: d2kxfa3
        automated match to d2mpua_
    31. Domains for 2kxh:
      1. 2175157Domain d2kxha1: 2kxh A:102-200 [264364]
        Other proteins in same PDB: d2kxha3
        automated match to d2mpua_
      2. 2175158Domain d2kxha2: 2kxh A:201-297 [264365]
        Other proteins in same PDB: d2kxha3
        automated match to d2mpua_
    32. Domain for 2la6:
    33. Domain for 2lcw:
    34. Domain for 2lea:
    35. Domain for 2leb:
    36. Domain for 2lec:
    37. Domain for 2lmi:
    38. Domain for 2lxi:
    39. Domain for 2lxu:
    40. Domain for 2m3d:
    41. Domain for 2m8h:
    42. Domain for 2mb0:
    43. Domain for 2mik:
    44. Domain for 2mil:
    45. Domain for 2mks:
    46. Domain for 2mmy:
    47. Domain for 2my7:
    48. Domain for 2my8:
    49. Domain for 2pe8:
    50. Domain for 2rra:
    51. Domain for 2rrb:
    52. Domain for 2ytc:
    53. Domain for 2ywk:
    54. Domain for 3b4d:
    55. Domains for 3b4m:
      1. 2175132Domain d3b4ma_: 3b4m A: [208517]
        automated match to d2cpea1
      2. 2175133Domain d3b4mb_: 3b4m B: [208518]
        automated match to d2cpea1
      3. 2175134Domain d3b4mc_: 3b4m C: [208519]
        automated match to d2cpea1
      4. 2175135Domain d3b4md_: 3b4m D: [208520]
        automated match to d2cpea1
    56. Domains for 3bs9:
      1. 2175102Domain d3bs9a_: 3bs9 A: [172805]
        automated match to d1x5sa1
        complexed with iod
      2. 2175103Domain d3bs9b_: 3bs9 B: [172806]
        automated match to d1x5sa1
        complexed with iod
    57. Domain for 3egn:
    58. Domains for 3hi9:
      1. 2175085Domain d3hi9a_: 3hi9 A: [211068]
        automated match to d1oo0b_
      2. 2175086Domain d3hi9b_: 3hi9 B: [211069]
        automated match to d1oo0b_
      3. 2175087Domain d3hi9c_: 3hi9 C: [211070]
        automated match to d1oo0b_
      4. 2175088Domain d3hi9d_: 3hi9 D: [211071]
        automated match to d1oo0b_
    59. Domains for 3n9u:
      1. 2175082Domain d3n9uc_: 3n9u C: [294006]
        automated match to d3n9ui_
        protein/RNA complex; complexed with gol
      2. 2175083Domain d3n9ui_: 3n9u I: [265075]
        automated match to d4c7qa_
        protein/RNA complex; complexed with gol
    60. Domains for 3p5t:
      1. 2175118Domain d3p5tl_: 3p5t L: [265145]
        automated match to d4c7qa_
        protein/RNA complex
      2. 2175119Domain d3p5tm_: 3p5t M: [265146]
        automated match to d4c7qa_
        protein/RNA complex
      3. 2175120Domain d3p5tn_: 3p5t N: [265147]
        automated match to d4c7qa_
        protein/RNA complex
      4. 2175121Domain d3p5to_: 3p5t O: [265148]
        automated match to d4c7qa_
        protein/RNA complex
      5. 2175122Domain d3p5tp_: 3p5t P: [265149]
        automated match to d4c7qa_
        protein/RNA complex
      6. 2175123Domain d3p5tq_: 3p5t Q: [265150]
        automated match to d4c7qa_
        protein/RNA complex
    61. Domains for 3p6y:
      1. 2175124Domain d3p6yc_: 3p6y C: [265151]
        automated match to d4c7qa_
        protein/RNA complex
      2. 2175125Domain d3p6yd_: 3p6y D: [265152]
        automated match to d4c7qa_
        protein/RNA complex
      3. 2175126Domain d3p6yg_: 3p6y G: [265153]
        automated match to d4c7qa_
        protein/RNA complex
      4. 2175127Domain d3p6yh_: 3p6y H: [265154]
        automated match to d4c7qa_
        protein/RNA complex
      5. 2175128Domain d3p6yk_: 3p6y K: [265155]
        automated match to d4c7qa_
        protein/RNA complex
      6. 2175129Domain d3p6yl_: 3p6y L: [265156]
        automated match to d4c7qa_
        protein/RNA complex
      7. 2175130Domain d3p6yo_: 3p6y O: [265157]
        automated match to d4c7qa_
        protein/RNA complex
      8. 2175131Domain d3p6yp_: 3p6y P: [265158]
        automated match to d4c7qa_
        protein/RNA complex
    62. Domains for 3q2s:
      1. 2175136Domain d3q2sc_: 3q2s C: [265241]
        automated match to d2mpua_
        protein/RNA complex
      2. 2175137Domain d3q2sd_: 3q2s D: [265242]
        automated match to d2mpua_
        protein/RNA complex
    63. Domains for 3r27:
      1. 2175104Domain d3r27a_: 3r27 A: [200430]
        automated match to d3r27b_
        complexed with gol
      2. 2175105Domain d3r27b_: 3r27 B: [196174]
        automated match to d1wexa_
        complexed with gol
    64. Domains for 3rw7:
      1. 2175146Domain d3rw7a1: 3rw7 A:118-199 [249238]
        Other proteins in same PDB: d3rw7a2, d3rw7b_, d3rw7c2, d3rw7d_
        automated match to d1kooa2
      2. 2175147Domain d3rw7c1: 3rw7 C:117-198 [249241]
        Other proteins in same PDB: d3rw7a2, d3rw7b_, d3rw7c2, d3rw7d_
        automated match to d1kooa2
    65. Domain for 3ucg:
    66. Domain for 3ue2:
    67. Domain for 3us5:
    68. Domains for 3uwt:
      1. 2175140Domain d3uwta1: 3uwt A:118-217 [265542]
        Other proteins in same PDB: d3uwta3
        automated match to d2mpua_
        complexed with cl
      2. 2175141Domain d3uwta2: 3uwt A:218-313 [265543]
        Other proteins in same PDB: d3uwta3
        automated match to d2mpua_
        complexed with cl
    69. Domain for 4a8x:
    70. Domains for 4cko:
      1. 2175094Domain d4ckoa3: 4cko A:445-531 [307129]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
      2. 2175095Domain d4ckob4: 4cko B:445-531 [307131]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
      3. 2175096Domain d4ckoc4: 4cko C:445-531 [307133]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
      4. 2175097Domain d4ckod4: 4cko D:445-531 [307135]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
      5. 2175098Domain d4ckoe4: 4cko E:445-531 [307137]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
      6. 2175099Domain d4ckof4: 4cko F:445-531 [307139]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
      7. 2175100Domain d4ckog4: 4cko G:445-531 [307141]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
      8. 2175101Domain d4ckoh4: 4cko H:445-531 [307143]
        Other proteins in same PDB: d4ckoa2, d4ckob3, d4ckoc3, d4ckod3, d4ckoe3, d4ckof3, d4ckog3, d4ckoh3
        automated match to d2adca2
        complexed with cl, zn
    71. Domains for 4cq1:
      1. 2175109Domain d4cq1a2: 4cq1 A:445-531 [237006]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      2. 2175110Domain d4cq1b2: 4cq1 B:445-531 [237000]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      3. 2175111Domain d4cq1c2: 4cq1 C:445-531 [237001]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      4. 2175112Domain d4cq1d2: 4cq1 D:445-531 [237005]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      5. 2175113Domain d4cq1e2: 4cq1 E:445-531 [237004]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      6. 2175114Domain d4cq1f2: 4cq1 F:445-531 [237003]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      7. 2175115Domain d4cq1g2: 4cq1 G:445-531 [236999]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
      8. 2175116Domain d4cq1h2: 4cq1 H:445-531 [237002]
        Other proteins in same PDB: d4cq1a1, d4cq1b1, d4cq1c1, d4cq1d1, d4cq1e1, d4cq1f1, d4cq1g1, d4cq1h1
        automated match to d4ckob2
        complexed with cl, zn
    72. Domains for 4ed5:
      1. 2175089Domain d4ed5a1: 4ed5 A:18-99 [234372]
        automated match to d1fxla1
        protein/RNA complex; complexed with edo, gol, m2m
      2. 2175090Domain d4ed5a2: 4ed5 A:100-185 [234388]
        automated match to d1fxla2
        protein/RNA complex; complexed with edo, gol, m2m
      3. 2175091Domain d4ed5b1: 4ed5 B:18-99 [234373]
        automated match to d1fxla1
        protein/RNA complex; complexed with edo, gol, m2m
      4. 2175092Domain d4ed5b2: 4ed5 B:100-186 [234387]
        automated match to d1fxla2
        protein/RNA complex; complexed with edo, gol, m2m
    73. Domains for 4egl:
      1. 2175144Domain d4egla1: 4egl A:18-99 [234378]
        automated match to d1fxla1
        complexed with gol, so4
      2. 2175145Domain d4egla2: 4egl A:100-184 [234389]
        automated match to d1fxla2
        complexed with gol, so4
    74. Domain for 4f25:
    75. Domain for 4f26:
    76. Domains for 4fxv:
      1. 2175078Domain d4fxva1: 4fxv A:20-99 [221592]
        Other proteins in same PDB: d4fxva2, d4fxvb2, d4fxvc2, d4fxvd2
        automated match to d2cpja1
      2. 2175079Domain d4fxvb1: 4fxv B:20-97 [221593]
        Other proteins in same PDB: d4fxva2, d4fxvb2, d4fxvc2, d4fxvd2
        automated match to d2cpja1
      3. 2175080Domain d4fxvc1: 4fxv C:20-99 [221594]
        Other proteins in same PDB: d4fxva2, d4fxvb2, d4fxvc2, d4fxvd2
        automated match to d2cpja1
      4. 2175081Domain d4fxvd1: 4fxv D:20-96 [221595]
        Other proteins in same PDB: d4fxva2, d4fxvb2, d4fxvc2, d4fxvd2
        automated match to d2cpja1
    77. Domains for 4ljm:
      1. 2175138Domain d4ljma_: 4ljm A: [257840]
        automated match to d2rraa_
      2. 2175139Domain d4ljmb_: 4ljm B: [262951]
        automated match to d2mika_
    78. Domains for 4tlq:
      1. 2175142Domain d4tlqa_: 4tlq A: [279845]
        automated match to d2mika_
      2. 2175143Domain d4tlqb_: 4tlq B: [279846]
        automated match to d2mika_
    79. Domains for 5iqq:
      1. 2273696Domain d5iqqb_: 5iqq B: [316997]
        automated match to d1d8za_
        protein/RNA complex
      2. 2273697Domain d5iqqe_: 5iqq E: [316998]
        automated match to d1d8za_
        protein/RNA complex
      3. 2273703Domain d5iqqd_: 5iqq D: [317004]
        automated match to d1d8za_
        protein/RNA complex
      4. 2273708Domain d5iqqa_: 5iqq A: [317009]
        automated match to d1d8za_
        protein/RNA complex
      5. 2273729Domain d5iqqc_: 5iqq C: [317030]
        automated match to d1d8za_
        protein/RNA complex
    80. Domain for 5lxr:
    81. Domains for 5lxy:
      1. 2283899Domain d5lxyg_: 5lxy G: [327200]
        automated match to d3ulha_
        protein/RNA complex; complexed with br
      2. 2283908Domain d5lxyi_: 5lxy I: [327209]
        automated match to d3ulha_
        protein/RNA complex; complexed with br
      3. 2283923Domain d5lxya_: 5lxy A: [327224]
        automated match to d3ulha_
        protein/RNA complex; complexed with br
      4. 2283925Domain d5lxye_: 5lxy E: [327226]
        automated match to d3ulha_
        protein/RNA complex; complexed with br
      5. 2283940Domain d5lxyb_: 5lxy B: [327241]
        automated match to d3ulha_
        protein/RNA complex; complexed with br
      6. 2283952Domain d5lxym_: 5lxy M: [327253]
        automated match to d3ulha_
        protein/RNA complex; complexed with br
      7. 2283957Domain d5lxyk_: 5lxy K: [327258]
        automated match to d3ulha_
        protein/RNA complex; complexed with br
    82. Domains for 5tbx:
      1. 2289689Domain d5tbxb1: 5tbx B:2-92 [332990]
        Other proteins in same PDB: d5tbxb2
        automated match to d2mb0b_
        complexed with act, ni
      2. 2289718Domain d5tbxa_: 5tbx A: [333019]
        Other proteins in same PDB: d5tbxb2
        automated match to d2mb0b_
        complexed with act, ni
    83. Domains for 5uzg:
      1. 2288924Domain d5uzga_: 5uzg A: [332225]
        automated match to d2kg0a_
        complexed with gol, so4
      2. 2288985Domain d5uzgb_: 5uzg B: [332286]
        automated match to d2kg0a_
        complexed with gol, so4
    84. Domain for 5uzm:
  6. 2175201Mouse (Mus musculus) [TaxId:10090] [226227] (5 PDB entries)
    1. Domain for 2dgo:
    2. Domain for 2dng:
    3. Domain for 2e5i:
    4. Domain for 2rne:
    5. Domain for 2xsf:
  7. 2175207Nematode (Caenorhabditis elegans) [TaxId:6239] [258940] (1 PDB entry)
  8. 2175209Norway rat (Rattus norvegicus) [TaxId:10116] [272199] (3 PDB entries)
    1. Domain for 2mqm:
    2. Domain for 2mqo:
    3. Domain for 2mqp:
  9. 2175213Tobacco (Nicotiana tabacum) [TaxId:4097] [256225] (1 PDB entry)
  10. 2268472Plasmodium falciparum [TaxId:36329] [311778] (2 PDB entries)
    1. Domain for 2myf:
    2. Domain for 2n3l:
  11. 2288922Drosophila melanogaster [TaxId:7227] [332223] (1 PDB entry)

More info for Protein automated matches from d.58.7.0: automated matches

Timeline for Protein automated matches from d.58.7.0: automated matches: