SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2031006Superfamily b.1.8: Cu,Zn superoxide dismutase-like [49329] (2 families) (S)
    has additional strand at N-terminus
  5. 2031581Family b.1.8.0: automated matches [191527] (1 protein)
    not a true family
  6. 2031582Protein automated matches [190890] (7 species)
    not a true protein

Species:

  1. 2031583Bacillus subtilis [TaxId:1423] [224973] (4 PDB entries)
    1. Domains for 1s4i:
      1. 2031586Domain d1s4ia_: 1s4i A: [202880]
        automated match to d1do5d_
        complexed with cl, zn
      2. 2031587Domain d1s4ib_: 1s4i B: [202881]
        automated match to d1do5d_
        complexed with cl, zn
      3. 2031588Domain d1s4ic_: 1s4i C: [202882]
        automated match to d1do5d_
        complexed with cl, zn
      4. 2031589Domain d1s4id_: 1s4i D: [202883]
        automated match to d1do5d_
        complexed with cl, zn
    2. Domain for 1u3n:
    3. Domains for 1xtl:
      1. 2031590Domain d1xtla_: 1xtl A: [203163]
        automated match to d1do5d_
        complexed with cu, zn; mutant
      2. 2031591Domain d1xtlb_: 1xtl B: [203164]
        automated match to d1do5d_
        complexed with cu, zn; mutant
      3. 2031592Domain d1xtlc_: 1xtl C: [203165]
        automated match to d1do5d_
        complexed with cu, zn; mutant
      4. 2031593Domain d1xtld_: 1xtl D: [203166]
        automated match to d1do5d_
        complexed with cu, zn; mutant
    4. Domains for 1xtm:
      1. 2031584Domain d1xtma_: 1xtm A: [203167]
        automated match to d1do5d_
        complexed with cu, zn; mutant
      2. 2031585Domain d1xtmb_: 1xtm B: [203168]
        automated match to d1do5d_
        complexed with cu, zn; mutant
  2. 2031595Human (Homo sapiens) [TaxId:9606] [255273] (1 PDB entry)
  3. 2031600Hydra vulgaris [TaxId:6087] [268522] (1 PDB entry)
  4. 2031602Megavirus chiliensis [TaxId:1094892] [260821] (1 PDB entry)
  5. 2031604Sedum alfredii [TaxId:439688] [311437] (1 PDB entry)
  6. 2031611Silkworm (Bombyx mori) [TaxId:7091] [188296] (2 PDB entries)
    1. Domain for 2e46:
    2. Domains for 2e47:
      1. 2031612Domain d2e47a_: 2e47 A: [163814]
        automated match to d1srda_
        complexed with cu, zn
      2. 2031613Domain d2e47b_: 2e47 B: [163815]
        automated match to d1srda_
        complexed with cu, zn
  7. 2289079Onchocerca volvulus [TaxId:6282] [332380] (1 PDB entry)

More info for Protein automated matches from b.1.8.0: automated matches

Timeline for Protein automated matches from b.1.8.0: automated matches: