SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.2: Fibronectin type III [49265] (2 families)
Family b.1.2.1: Fibronectin type III [49266] (45 proteins)
Pfam PF00041
Protein automated matches [190888] (2 species)
not a true protein

Species:

Escherichia coli [TaxId:562] [360878] (1 PDB entry)
- Domain for 6brb:
  - Domain d6brbd_: 6brb D: [360879]
    Other proteins in same PDB: d6brba_
    automated match to d2rb8a_

Human (Homo sapiens) [TaxId:9606] [188282] (33 PDB entries)

Domains for 2aew:
1. Domain d2aewa1: 2aew A:29-129 [126648]
  automated match to d2aewa1
2. Domain d2aewa2: 2aew A:130-233 [126649]
  automated match to d2aewa2
3. Domain d2aewb1: 2aew B:31-129 [126650]
  automated match to d2aewb1
4. Domain d2aewb2: 2aew B:130-233 [126651]
  automated match to d2aewb2
Domain for 2ec9:
- Domain d2ec9u_: 2ec9 U: [161411]
  Other proteins in same PDB: d2ec9h_, d2ec9l1, d2ec9l2, d2ec9l3
  automated match to d2c4fu1
  complexed with 24x, aso, ca, fuc
Domains for 2lag:
1. Domain d2lagb1: 2lag B:1-109 [242824]
  Other proteins in same PDB: d2laga_
  automated match to d2hyma1
2. Domain d2lagb2: 2lag B:110-212 [242825]
  Other proteins in same PDB: d2laga_
  automated match to d2hyma2
Domain for 2mnu:
- Domain d2mnua_: 2mnu A: [304205]
  automated match to d2fnba_
Domain for 2rb8:
- Domain d2rb8a_: 2rb8 A: [168043]
  automated match to d1tena_
Domains for 2rbl:
1. Domain d2rbla_: 2rbl A: [198333]
  automated match to d2rblm_
2. Domain d2rblb_: 2rbl B: [198334]
  automated match to d2rblm_
3. Domain d2rblm_: 2rbl M: [168046]
  automated match to d1tena_
Domains for 3bpl:
1. Domain d3bplb1: 3bpl B:2-96 [199113]
  Other proteins in same PDB: d3bpla_, d3bplb3, d3bplc1, d3bplc2
  automated match to d1iarb1
  complexed with nag
2. Domain d3bplb2: 3bpl B:97-199 [199114]
  Other proteins in same PDB: d3bpla_, d3bplb3, d3bplc1, d3bplc2
  automated match to d1iarb2
  complexed with nag
Domains for 3bpn:
1. Domain d3bpnb1: 3bpn B:2-96 [239162]
  Other proteins in same PDB: d3bpna_, d3bpnb3
  automated match to d3bplb1
  complexed with nag
2. Domain d3bpnb2: 3bpn B:97-198 [239163]
  Other proteins in same PDB: d3bpna_, d3bpnb3
  automated match to d3bplb2
  complexed with nag
Domains for 3bpo:
1. Domain d3bpob1: 3bpo B:2-96 [245390]
  Other proteins in same PDB: d3bpoa_, d3bpob3
  automated match to d3bplb1
  complexed with nag
2. Domain d3bpob2: 3bpo B:97-196 [245391]
  Other proteins in same PDB: d3bpoa_, d3bpob3
  automated match to d3bplb2
  complexed with nag
Domains for 3d1m:
1. Domain d3d1mc_: 3d1m C: [161636]
  Other proteins in same PDB: d3d1ma_, d3d1mb_
  automated match to d1x4ya1
  complexed with ca, zn
2. Domain d3d1md_: 3d1m D: [161637]
  Other proteins in same PDB: d3d1ma_, d3d1mb_
  automated match to d1x4ya1
  complexed with ca, zn
Domains for 3d48:
1. Domain d3d48r1: 3d48 R:2-100 [157289]
  Other proteins in same PDB: d3d48p_
  automated match to d3nceb1
  complexed with co3
2. Domain d3d48r2: 3d48 R:101-204 [157290]
  Other proteins in same PDB: d3d48p_
  automated match to d3mzgb2
  complexed with co3
Domains for 3mzg:
1. Domain d3mzgb1: 3mzg B:1-100 [232958]
  Other proteins in same PDB: d3mzga_
  automated match to d3d48r1
  complexed with cl, na
2. Domain d3mzgb2: 3mzg B:101-206 [232959]
  Other proteins in same PDB: d3mzga_
  automated match to d3d48r2
  complexed with cl, na
Domain for 3n06:
- Domain d3n06b1: 3n06 B:1-100 [232971]
  Other proteins in same PDB: d3n06a_
  automated match to d3d48r1
  complexed with cl, na; mutant
Domains for 3n0p:
1. Domain d3n0pb1: 3n0p B:1-100 [239488]
  Other proteins in same PDB: d3n0pa_
  automated match to d3mzgb1
  complexed with cl, na; mutant
2. Domain d3n0pb2: 3n0p B:101-206 [239489]
  Other proteins in same PDB: d3n0pa_
  automated match to d3mzgb2
  complexed with cl, na; mutant
Domains for 3n1f:
1. Domain d3n1fc_: 3n1f C: [181781]
  Other proteins in same PDB: d3n1fa_, d3n1fb_, d3n1fd2
  automated match to d1x4ya1
  complexed with ca, zn
2. Domain d3n1fd1: 3n1f D:826-924 [181782]
  Other proteins in same PDB: d3n1fa_, d3n1fb_, d3n1fd2
  automated match to d1x4ya1
  complexed with ca, zn
Domains for 3n1g:
1. Domain d3n1gc_: 3n1g C: [181785]
  Other proteins in same PDB: d3n1ga_, d3n1gb_
  automated match to d1x4ya1
  complexed with ca, mg, zn
2. Domain d3n1gd_: 3n1g D: [181786]
  Other proteins in same PDB: d3n1ga_, d3n1gb_
  automated match to d1x4ya1
  complexed with ca, mg, zn
Domain for 3n1m:
- Domain d3n1mc_: 3n1m C: [181792]
  Other proteins in same PDB: d3n1mb_
  automated match to d1x4ya1
  complexed with ca, zn
Domain for 3n1p:
- Domain d3n1pc_: 3n1p C: [181798]
  Other proteins in same PDB: d3n1pb_
  automated match to d1x4ya1
  complexed with ca, zn
Domains for 3n1q:
1. Domain d3n1qc_: 3n1q C: [181801]
  Other proteins in same PDB: d3n1qa_, d3n1qb_, d3n1qe_
  automated match to d1x4ya1
  complexed with ca, zn
2. Domain d3n1qd_: 3n1q D: [181802]
  Other proteins in same PDB: d3n1qa_, d3n1qb_, d3n1qe_
  automated match to d1x4ya1
  complexed with ca, zn
3. Domain d3n1qf_: 3n1q F: [181804]
  Other proteins in same PDB: d3n1qa_, d3n1qb_, d3n1qe_
  automated match to d1x4ya1
  complexed with ca, zn
Domains for 3ncb:
1. Domain d3ncbb1: 3ncb B:1-100 [239490]
  Other proteins in same PDB: d3ncba_
  automated match to d3mzgb1
  complexed with cl, co3, na; mutant
2. Domain d3ncbb2: 3ncb B:101-206 [239491]
  Other proteins in same PDB: d3ncba_
  automated match to d3mzgb2
  complexed with cl, co3, na; mutant
Domains for 3ncc:
1. Domain d3nccb1: 3ncc B:1-100 [232997]
  Other proteins in same PDB: d3ncca_
  automated match to d3d48r1
  complexed with cl, co3, na; mutant
2. Domain d3nccb2: 3ncc B:101-206 [232998]
  Other proteins in same PDB: d3ncca_
  automated match to d3d48r2
  complexed with cl, co3, na; mutant
Domains for 3nce:
1. Domain d3nceb1: 3nce B:1-100 [233001]
  Other proteins in same PDB: d3ncea_
  automated match to d3d48r1
  complexed with cl, co3, na; mutant
2. Domain d3nceb2: 3nce B:101-206 [233002]
  Other proteins in same PDB: d3ncea_
  automated match to d3d48r2
  complexed with cl, co3, na; mutant
Domains for 3ncf:
1. Domain d3ncfb1: 3ncf B:1-100 [232999]
  Other proteins in same PDB: d3ncfa_
  automated match to d3d48r1
  complexed with cl, na; mutant
2. Domain d3ncfb2: 3ncf B:101-206 [233000]
  Other proteins in same PDB: d3ncfa_
  automated match to d3d48r2
  complexed with cl, na; mutant
Domains for 3s9d:
1. Domain d3s9db1: 3s9d B:12-109 [233523]
  Other proteins in same PDB: d3s9da_, d3s9dc_
  automated match to d2hyma1
  complexed with cl
2. Domain d3s9db2: 3s9d B:110-204 [233525]
  Other proteins in same PDB: d3s9da_, d3s9dc_
  automated match to d2hyma2
  complexed with cl
3. Domain d3s9dd1: 3s9d D:11-109 [233522]
  Other proteins in same PDB: d3s9da_, d3s9dc_
  automated match to d2hyma1
  complexed with cl
4. Domain d3s9dd2: 3s9d D:110-205 [233524]
  Other proteins in same PDB: d3s9da_, d3s9dc_
  automated match to d2hyma2
  complexed with cl
Domains for 4lxo:
1. Domain d4lxoa1: 4lxo A:1326-1417 [258667]
  automated match to d2mfna1
  complexed with ca
2. Domain d4lxoa2: 4lxo A:1418-1509 [258670]
  automated match to d2mfna2
  complexed with ca
3. Domain d4lxob1: 4lxo B:1326-1417 [258668]
  automated match to d2mfna1
  complexed with ca
4. Domain d4lxob2: 4lxo B:1418-1509 [258671]
  automated match to d2mfna2
  complexed with ca
Domains for 4y5v:
1. Domain d4y5vc1: 4y5v C:9-116 [272041]
  Other proteins in same PDB: d4y5va_, d4y5vb_, d4y5vd_, d4y5ve_, d4y5vg_, d4y5vh_
  automated match to d1eerb1
  complexed with gol, peg, pge
2. Domain d4y5vc2: 4y5v C:117-223 [272042]
  Other proteins in same PDB: d4y5va_, d4y5vb_, d4y5vd_, d4y5ve_, d4y5vg_, d4y5vh_
  automated match to d1cn4b2
  complexed with gol, peg, pge
3. Domain d4y5vf1: 4y5v F:9-116 [272046]
  Other proteins in same PDB: d4y5va_, d4y5vb_, d4y5vd_, d4y5ve_, d4y5vg_, d4y5vh_
  automated match to d1eerb1
  complexed with gol, peg, pge
4. Domain d4y5vf2: 4y5v F:117-223 [272047]
  Other proteins in same PDB: d4y5va_, d4y5vb_, d4y5vd_, d4y5ve_, d4y5vg_, d4y5vh_
  automated match to d1cn4b2
  complexed with gol, peg, pge
5. Domain d4y5vi1: 4y5v I:10-116 [272044]
  Other proteins in same PDB: d4y5va_, d4y5vb_, d4y5vd_, d4y5ve_, d4y5vg_, d4y5vh_
  automated match to d1eerb1
  complexed with gol, peg, pge
6. Domain d4y5vi2: 4y5v I:117-219 [272045]
  Other proteins in same PDB: d4y5va_, d4y5vb_, d4y5vd_, d4y5ve_, d4y5vg_, d4y5vh_
  automated match to d1cn4b2
  complexed with gol, peg, pge

Domains for 4y5x:

Domain d4y5xc1: 4y5x C:11-116 [270878]
Other proteins in same PDB: d4y5xa_, d4y5xb1, d4y5xb2, d4y5xd_, d4y5xe1, d4y5xe2, d4y5xg_, d4y5xh1, d4y5xh2, d4y5xj_, d4y5xk1, d4y5xk2
automated match to d1eerb1
complexed with flc, peg

Domain d4y5xc2: 4y5x C:117-222 [270879]
Other proteins in same PDB: d4y5xa_, d4y5xb1, d4y5xb2, d4y5xd_, d4y5xe1, d4y5xe2, d4y5xg_, d4y5xh1, d4y5xh2, d4y5xj_, d4y5xk1, d4y5xk2
automated match to d1cn4b2
complexed with flc, peg

Domain d4y5xf1: 4y5x F:11-116 [270880]
Other proteins in same PDB: d4y5xa_, d4y5xb1, d4y5xb2, d4y5xd_, d4y5xe1, d4y5xe2, d4y5xg_, d4y5xh1, d4y5xh2, d4y5xj_, d4y5xk1, d4y5xk2
automated match to d1eerb1
complexed with flc, peg

Domain d4y5xf2: 4y5x F:117-222 [270881]
Other proteins in same PDB: d4y5xa_, d4y5xb1, d4y5xb2, d4y5xd_, d4y5xe1, d4y5xe2, d4y5xg_, d4y5xh1, d4y5xh2, d4y5xj_, d4y5xk1, d4y5xk2
automated match to d1cn4b2
complexed with flc, peg

Domain d4y5xi1: 4y5x I:10-116 [270884]
Other proteins in same PDB: d4y5xa_, d4y5xb1, d4y5xb2, d4y5xd_, d4y5xe1, d4y5xe2, d4y5xg_, d4y5xh1, d4y5xh2, d4y5xj_, d4y5xk1, d4y5xk2
automated match to d1eerb1
complexed with flc, peg

Domain d4y5xi2: 4y5x I:117-222 [270885]
Other proteins in same PDB: d4y5xa_, d4y5xb1, d4y5xb2, d4y5xd_, d4y5xe1, d4y5xe2, d4y5xg_, d4y5xh1, d4y5xh2, d4y5xj_, d4y5xk1, d4y5xk2
automated match to d1cn4b2
complexed with flc, peg

Domain d4y5xl1: 4y5x L:11-116 [270886]
Other proteins in same PDB: d4y5xa_, d4y5xb1, d4y5xb2, d4y5xd_, d4y5xe1, d4y5xe2, d4y5xg_, d4y5xh1, d4y5xh2, d4y5xj_, d4y5xk1, d4y5xk2
automated match to d1eerb1
complexed with flc, peg

Domain d4y5xl2: 4y5x L:117-224 [270887]
Other proteins in same PDB: d4y5xa_, d4y5xb1, d4y5xb2, d4y5xd_, d4y5xe1, d4y5xe2, d4y5xg_, d4y5xh1, d4y5xh2, d4y5xj_, d4y5xk1, d4y5xk2
automated match to d1cn4b2
complexed with flc, peg

Domains for 4y5y:
1. Domain d4y5yc1: 4y5y C:9-116 [270873]
  Other proteins in same PDB: d4y5ya_, d4y5yb_, d4y5yd_, d4y5ye_
  automated match to d1eerb1
  complexed with gol
2. Domain d4y5yc2: 4y5y C:117-220 [270874]
  Other proteins in same PDB: d4y5ya_, d4y5yb_, d4y5yd_, d4y5ye_
  automated match to d1cn4b2
  complexed with gol
3. Domain d4y5yf1: 4y5y F:9-116 [270876]
  Other proteins in same PDB: d4y5ya_, d4y5yb_, d4y5yd_, d4y5ye_
  automated match to d1eerb1
  complexed with gol
4. Domain d4y5yf2: 4y5y F:117-224 [270877]
  Other proteins in same PDB: d4y5ya_, d4y5yb_, d4y5yd_, d4y5ye_
  automated match to d1cn4b2
  complexed with gol
Domains for 5e4e:
1. Domain d5e4eb1: 5e4e B:1-96 [302127]
  Other proteins in same PDB: d5e4ea_
  automated match to d3bplb1
  complexed with nag, so4
2. Domain d5e4eb2: 5e4e B:97-196 [302128]
  Other proteins in same PDB: d5e4ea_
  automated match to d3bplb2
  complexed with nag, so4
Domains for 5fuc:
1. Domain d5fucc1: 5fuc C:98-195 [328935]
  Other proteins in same PDB: d5fuca1, d5fuca2, d5fucb_, d5fuce_, d5fucv_
  automated match to d1n26a2
  complexed with nag
2. Domain d5fucc2: 5fuc C:196-297 [328936]
  Other proteins in same PDB: d5fuca1, d5fuca2, d5fucb_, d5fuce_, d5fucv_
  automated match to d1n26a3
  complexed with nag
3. Domain d5fucd1: 5fuc D:94-195 [328828]
  Other proteins in same PDB: d5fuca1, d5fuca2, d5fucb_, d5fuce_, d5fucv_
  automated match to d1n26a2
  complexed with nag
4. Domain d5fucd2: 5fuc D:196-298 [328829]
  Other proteins in same PDB: d5fuca1, d5fuca2, d5fucb_, d5fuce_, d5fucv_
  automated match to d1n26a3
  complexed with nag
Domains for 5n48:
1. Domain d5n48b_: 5n48 B: [346702]
  Other proteins in same PDB: d5n48a_, d5n48c_, d5n48d2
  automated match to d2fnba_
2. Domain d5n48d1: 5n48 D:1266-1357 [346716]
  Other proteins in same PDB: d5n48a_, d5n48c_, d5n48d2
  automated match to d2fnba_
Domains for 6oel:
1. Domain d6oelb1: 6oel B:2-96 [372659]
  Other proteins in same PDB: d6oela_, d6oelb3, d6oelc1, d6oelh1, d6oelh2, d6oell1, d6oell2
  automated match to d3bplb1
  complexed with nag, no3
2. Domain d6oelb2: 6oel B:97-199 [372660]
  Other proteins in same PDB: d6oela_, d6oelb3, d6oelc1, d6oelh1, d6oelh2, d6oell1, d6oell2
  automated match to d3bpnb2
  complexed with nag, no3
Domains for 7s2s:
1. Domain d7s2sb1: 7s2s B:32-129 [422607]
  automated match to d4gs7b1
  complexed with so4
2. Domain d7s2sb2: 7s2s B:130-235 [422608]
  automated match to d4gs7b2
  complexed with so4
3. Domain d7s2sd1: 7s2s D:32-129 [422626]
  automated match to d4gs7b1
  complexed with so4
4. Domain d7s2sd2: 7s2s D:130-235 [422627]
  automated match to d4gs7b2
  complexed with so4

More info for Protein automated matches from b.1.2.1: Fibronectin type III

Timeline for Protein automated matches from b.1.2.1: Fibronectin type III:

Protein automated matches from b.1.2.1: Fibronectin type III first appeared in SCOPe 2.01
Protein automated matches from b.1.2.1: Fibronectin type III appears in SCOPe 2.07