SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2077691Fold b.140: Replicase NSP9 [101815] (1 superfamily)
    barrel; n=6, S=8, greek-key; similar to one trypsin-like protease barrel
  4. 2077692Superfamily b.140.1: Replicase NSP9 [101816] (2 families) (S)
  5. 2077705Family b.140.1.0: automated matches [191526] (1 protein)
    not a true family
  6. 2077706Protein automated matches [190886] (3 species)
    not a true protein

Species:

  1. 2077707Human coronavirus 229E [TaxId:11137] [188277] (2 PDB entries)
    1. Domain for 2j97:
    2. Domains for 2j98:
      1. 2077709Domain d2j98a_: 2j98 A: [165950]
        automated match to d1uw7a_
        complexed with dtt; mutant
      2. 2077710Domain d2j98b_: 2j98 B: [165951]
        automated match to d1uw7a_
        complexed with dtt; mutant
  2. 2275622Avian infectious bronchitis virus [TaxId:11127] [318923] (1 PDB entry)
  3. 2285579Porcine epidemic diarrhea virus cv777 [TaxId:229032] [328880] (2 PDB entries)
    1. Domains for 5hiy:
      1. 2285630Domain d5hiyb_: 5hiy B: [328931]
        automated match to d1qz8a_
        mutant
      2. 2285643Domain d5hiya_: 5hiy A: [328944]
        automated match to d1qz8a_
        mutant
      3. 2285656Domain d5hiyc_: 5hiy C: [328957]
        automated match to d1qz8a_
        mutant
    2. Domains for 5hiz:
      1. 2285580Domain d5hizb_: 5hiz B: [328881]
        automated match to d1qz8a_
      2. 2285649Domain d5hiza_: 5hiz A: [328950]
        automated match to d1qz8a_

More info for Protein automated matches from b.140.1.0: automated matches

Timeline for Protein automated matches from b.140.1.0: automated matches: