SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2178854Fold d.68: IF3-like [55199] (8 superfamilies)
    beta-alpha-beta-alpha-beta(2); 2 layers; mixed sheet 1243, strand 4 is antiparallel to the rest
  4. 2178868Superfamily d.68.2: EPT/RTPC-like [55205] (3 families) (S)
  5. 2179069Family d.68.2.0: automated matches [191521] (1 protein)
    not a true family
  6. 2179070Protein automated matches [190878] (13 species)
    not a true protein

Species:

  1. 2179071Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [256082] (1 PDB entry)
  2. 2179076Aquifex aeolicus [TaxId:224324] [188240] (2 PDB entries)
    1. Domain for 2yvw:
    2. Domain for 3swg:
  3. 2179079Bacillus halodurans [TaxId:86665] [226131] (1 PDB entry)
  4. 2179084Coxiella burnetii [TaxId:227377] [189961] (4 PDB entries)
    1. Domains for 3roi:
      1. 2179089Domain d3roia1: 3roi A:1-435 [185081]
        Other proteins in same PDB: d3roia2
        automated match to d1rf4a_
        complexed with cl, so4
      2. 2179090Domain d3roib_: 3roi B: [185082]
        Other proteins in same PDB: d3roia2
        automated match to d1rf4a_
        complexed with cl, so4
    2. Domains for 3slh:
      1. 2179085Domain d3slha1: 3slh A:1-435 [216469]
        Other proteins in same PDB: d3slha2, d3slhb2, d3slhc2, d3slhd2
        automated match to d3roia_
        complexed with 1pe, bme, cl, edo, gpj, peg, pg4, pge, po4, s3p, skm
      2. 2179086Domain d3slhb1: 3slh B:1-438 [216470]
        Other proteins in same PDB: d3slha2, d3slhb2, d3slhc2, d3slhd2
        automated match to d4egrb_
        complexed with 1pe, bme, cl, edo, gpj, peg, pg4, pge, po4, s3p, skm
      3. 2179087Domain d3slhc1: 3slh C:1-436 [216471]
        Other proteins in same PDB: d3slha2, d3slhb2, d3slhc2, d3slhd2
        automated match to d4egrb_
        complexed with 1pe, bme, cl, edo, gpj, peg, pg4, pge, po4, s3p, skm
      4. 2179088Domain d3slhd1: 3slh D:1-438 [216472]
        Other proteins in same PDB: d3slha2, d3slhb2, d3slhc2, d3slhd2
        automated match to d4egrb_
        complexed with 1pe, bme, cl, edo, gpj, peg, pg4, pge, po4, s3p, skm
    3. Domains for 4egr:
      1. 2179091Domain d4egra1: 4egr A:1-436 [201839]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d4egrb_
        complexed with pep, so4
      2. 2179092Domain d4egrb1: 4egr B:1-436 [195624]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d3roia_
        complexed with pep, so4
      3. 2179093Domain d4egrc1: 4egr C:1-436 [201840]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d4egrb_
        complexed with pep, so4
      4. 2179094Domain d4egrd1: 4egr D:1-436 [201841]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d4egrb_
        complexed with pep, so4
      5. 2179095Domain d4egre1: 4egr E:1-436 [201842]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d4egrb_
        complexed with pep, so4
      6. 2179096Domain d4egrf1: 4egr F:1-436 [201843]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d4egrb_
        complexed with pep, so4
    4. Domain for 4znd:
  5. 2179098Coxiella burnetii [TaxId:777] [189727] (2 PDB entries)
    1. Domain for 3tr1:
    2. Domain for 4gfp:
  6. 2179101Listeria monocytogenes [TaxId:1639] [256048] (1 PDB entry)
  7. 2179103Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [196937] (1 PDB entry)
  8. 2179105Streptococcus pneumoniae [TaxId:373153] [196932] (1 PDB entry)
  9. 2179107Vibrio cholerae [TaxId:243277] [260004] (1 PDB entry)
  10. 2269314Acinetobacter baumannii [TaxId:557600] [312620] (1 PDB entry)
  11. 2269950Acinetobacter baumannii [TaxId:400667] [313255] (1 PDB entry)
  12. 2283943Acinetobacter baumannii [TaxId:470] [327244] (1 PDB entry)
  13. 2286044Campylobacter jejuni [TaxId:192222] [329345] (1 PDB entry)

More info for Protein automated matches from d.68.2.0: automated matches

Timeline for Protein automated matches from d.68.2.0: automated matches: