Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2178854Fold d.68: IF3-like [55199] (8 superfamilies)
    beta-alpha-beta-alpha-beta(2); 2 layers; mixed sheet 1243, strand 4 is antiparallel to the rest
  4. 2178868Superfamily d.68.2: EPT/RTPC-like [55205] (3 families) (S)
  5. 2179069Family d.68.2.0: automated matches [191521] (1 protein)
    not a true family
  6. 2179070Protein automated matches [190878] (14 species)
    not a true protein

Species:

  1. 2179071Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [256082] (1 PDB entry)
  2. 2179076Aquifex aeolicus [TaxId:224324] [188240] (2 PDB entries)
    1. Domain for 2yvw:
    2. Domain for 3swg:
  3. 2179079Bacillus halodurans [TaxId:86665] [226131] (1 PDB entry)
  4. 2179084Coxiella burnetii [TaxId:227377] [189961] (4 PDB entries)
    1. Domains for 3roi:
      1. 2179089Domain d3roia1: 3roi A:1-435 [185081]
        Other proteins in same PDB: d3roia2
        automated match to d1rf4a_
        complexed with cl, so4
      2. 2179090Domain d3roib_: 3roi B: [185082]
        Other proteins in same PDB: d3roia2
        automated match to d1rf4a_
        complexed with cl, so4
    2. Domains for 3slh:
      1. 2179085Domain d3slha1: 3slh A:1-435 [216469]
        Other proteins in same PDB: d3slha2, d3slhb2, d3slhc2, d3slhd2
        automated match to d3roia_
        complexed with 1pe, bme, cl, edo, gpj, peg, pg4, pge, po4, s3p, skm
      2. 2179086Domain d3slhb1: 3slh B:1-438 [216470]
        Other proteins in same PDB: d3slha2, d3slhb2, d3slhc2, d3slhd2
        automated match to d4egrb_
        complexed with 1pe, bme, cl, edo, gpj, peg, pg4, pge, po4, s3p, skm
      3. 2179087Domain d3slhc1: 3slh C:1-436 [216471]
        Other proteins in same PDB: d3slha2, d3slhb2, d3slhc2, d3slhd2
        automated match to d4egrb_
        complexed with 1pe, bme, cl, edo, gpj, peg, pg4, pge, po4, s3p, skm
      4. 2179088Domain d3slhd1: 3slh D:1-438 [216472]
        Other proteins in same PDB: d3slha2, d3slhb2, d3slhc2, d3slhd2
        automated match to d4egrb_
        complexed with 1pe, bme, cl, edo, gpj, peg, pg4, pge, po4, s3p, skm
    3. Domains for 4egr:
      1. 2179091Domain d4egra1: 4egr A:1-436 [201839]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d4egrb_
        complexed with pep, so4
      2. 2179092Domain d4egrb1: 4egr B:1-436 [195624]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d3roia_
        complexed with pep, so4
      3. 2179093Domain d4egrc1: 4egr C:1-436 [201840]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d4egrb_
        complexed with pep, so4
      4. 2179094Domain d4egrd1: 4egr D:1-436 [201841]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d4egrb_
        complexed with pep, so4
      5. 2179095Domain d4egre1: 4egr E:1-436 [201842]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d4egrb_
        complexed with pep, so4
      6. 2179096Domain d4egrf1: 4egr F:1-436 [201843]
        Other proteins in same PDB: d4egra2, d4egrb2, d4egrc2, d4egrd2, d4egre2, d4egrf2
        automated match to d4egrb_
        complexed with pep, so4
    4. Domain for 4znd:
  5. 2179098Coxiella burnetii [TaxId:777] [189727] (2 PDB entries)
    1. Domain for 3tr1:
    2. Domain for 4gfp:
  6. 2179101Listeria monocytogenes [TaxId:1639] [256048] (1 PDB entry)
  7. 2179103Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [196937] (1 PDB entry)
  8. 2179105Streptococcus pneumoniae [TaxId:373153] [196932] (1 PDB entry)
  9. 2179107Vibrio cholerae [TaxId:243277] [260004] (1 PDB entry)
  10. 2269314Acinetobacter baumannii [TaxId:557600] [312620] (1 PDB entry)
  11. 2269950Acinetobacter baumannii [TaxId:400667] [313255] (1 PDB entry)
  12. 2283943Acinetobacter baumannii [TaxId:470] [327244] (1 PDB entry)
  13. 2286044Campylobacter jejuni [TaxId:192222] [329345] (1 PDB entry)
  14. 2293965Streptococcus pneumoniae [TaxId:170187] [337266] (1 PDB entry)

More info for Protein automated matches from d.68.2.0: automated matches

Timeline for Protein automated matches from d.68.2.0: automated matches: