SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class a: All alpha proteins [46456] (289 folds)
Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
Superfamily a.4.6: C-terminal effector domain of the bipartite response regulators [46894] (4 families)
binds to DNA and RNA polymerase; the N-terminal, receiver domain belongs to the CheY family
Family a.4.6.0: automated matches [191513] (1 protein)
not a true family
Protein automated matches [190858] (17 species)
not a true protein

Species:

Bacillus subtilis [TaxId:1423] [225130] (3 PDB entries)
1. Domain for 2d1v:
  - Domain d2d1va_: 2d1v A: [203860]
    automated match to d1gxqa_
2. Domains for 2krf:
  1. Domain d2krfa_: 2krf A: [264359]
    automated match to d2rnja_
  2. Domain d2krfb_: 2krf B: [264360]
    automated match to d2rnja_
3. Domain for 3ulq:
  - Domain d3ulqb_: 3ulq B: [265526]
    automated match to d2rnja_
    protein/DNA complex; complexed with mn
Deinococcus radiodurans [TaxId:1299] [226279] (2 PDB entries)
1. Domain for 3q9s:
  - Domain d3q9sa2: 3q9s A:123-212 [215134]
    Other proteins in same PDB: d3q9sa1
    automated match to d1kgsa1
2. Domains for 3q9v:
  1. Domain d3q9va_: 3q9v A: [248810]
    automated match to d2pmub_
  2. Domain d3q9vb_: 3q9v B: [248811]
    automated match to d2pmub_
Enterococcus faecalis [TaxId:226185] [230777] (1 PDB entry)
- Domain for 2hwv:
  - Domain d2hwva1: 2hwv A:134-232 [230778]
    Other proteins in same PDB: d2hwva2
    automated match to d2pmub_
    complexed with so4
Escherichia coli K-12 [TaxId:83333] [226337] (1 PDB entry)
- Domain for 3zq7:
  - Domain d3zq7a_: 3zq7 A: [218399]
    automated match to d1gxqa_
Helicobacter pylori [TaxId:85963] [255221] (3 PDB entries)
1. Domain for 2hqn:
  - Domain d2hqna1: 2hqn A:119-223 [242053]
    Other proteins in same PDB: d2hqna2
    automated match to d2d1va_
2. Domains for 2hqr:
  1. Domain d2hqra2: 2hqr A:118-223 [242057]
    Other proteins in same PDB: d2hqra1, d2hqrb1
    automated match to d1kgsa1
  2. Domain d2hqrb2: 2hqr B:118-223 [242059]
    Other proteins in same PDB: d2hqra1, d2hqrb1
    automated match to d1kgsa1
3. Domain for 2k4j:
  - Domain d2k4ja1: 2k4j A:13-115 [242376]
    Other proteins in same PDB: d2k4ja2
    automated match to d1odda_
Klebsiella pneumoniae [TaxId:1185418] [255488] (1 PDB entry)
- Domain for 2m87:
  - Domain d2m87a_: 2m87 A: [243136]
    automated match to d1gxpb_
Klebsiella pneumoniae [TaxId:573] [255310] (3 PDB entries)
1. Domain for 2jzy:
  - Domain d2jzya_: 2jzy A: [242326]
    automated match to d1gxpa_
2. Domain for 2mlk:
  - Domain d2mlka1: 2mlk A:131-239 [257942]
    Other proteins in same PDB: d2mlka2
    automated match to d3zq7a_
3. Domains for 4nhj:
  1. Domain d4nhja_: 4nhj A: [257989]
    automated match to d3zq7a_
    protein/DNA complex
  2. Domain d4nhjb_: 4nhj B: [257990]
    automated match to d3zq7a_
    protein/DNA complex
Mycobacterium tuberculosis [TaxId:1773] [188191] (3 PDB entries)
1. Domains for 1zlj:
  1. Domain d1zlja_: 1zlj A: [162519]
    Other proteins in same PDB: d1zljb2, d1zljf2
    automated match to d1fsea_
  2. Domain d1zljb1: 1zlj B:144-209 [162520]
    Other proteins in same PDB: d1zljb2, d1zljf2
    automated match to d1fsea_
  3. Domain d1zljc_: 1zlj C: [162521]
    Other proteins in same PDB: d1zljb2, d1zljf2
    automated match to d1fsea_
  4. Domain d1zljd_: 1zlj D: [162522]
    Other proteins in same PDB: d1zljb2, d1zljf2
    automated match to d1fsea_
  5. Domain d1zlje_: 1zlj E: [162523]
    Other proteins in same PDB: d1zljb2, d1zljf2
    automated match to d1fsea_
  6. Domain d1zljf1: 1zlj F:144-209 [162524]
    Other proteins in same PDB: d1zljb2, d1zljf2
    automated match to d1fsea_
  7. Domain d1zljg_: 1zlj G: [162525]
    Other proteins in same PDB: d1zljb2, d1zljf2
    automated match to d1fsea_
  8. Domain d1zljh_: 1zlj H: [162526]
    Other proteins in same PDB: d1zljb2, d1zljf2
    automated match to d1fsea_
2. Domains for 1zlk:
  1. Domain d1zlka_: 1zlk A: [241141]
    automated match to d1zljb_
    protein/DNA complex
  2. Domain d1zlkb_: 1zlk B: [241142]
    automated match to d1zljb_
    protein/DNA complex
3. Domains for 3c57:
  1. Domain d3c57a_: 3c57 A: [199160]
    automated match to d3c57b_
  2. Domain d3c57b_: 3c57 B: [195256]
    automated match to d1zljb_
Mycobacterium tuberculosis [TaxId:83332] [225356] (2 PDB entries)
1. Domain for 2oqr:
  - Domain d2oqra2: 2oqr A:129-226 [205352]
    Other proteins in same PDB: d2oqra1, d2oqra3
    automated match to d1p2fa1
    complexed with act, bme, la
2. Domains for 2pmu:
  1. Domain d2pmua_: 2pmu A: [205543]
    automated match to d1gxpb_
    complexed with cl, gly, k, po4, unx
  2. Domain d2pmub_: 2pmu B: [205544]
    automated match to d1gxpb_
    complexed with cl, gly, k, po4, unx
  3. Domain d2pmuc_: 2pmu C: [205545]
    automated match to d1gxpb_
    complexed with cl, gly, k, po4, unx
  4. Domain d2pmud_: 2pmu D: [205546]
    automated match to d1gxpb_
    complexed with cl, gly, k, po4, unx
  5. Domain d2pmue_: 2pmu E: [205547]
    automated match to d1gxpb_
    complexed with cl, gly, k, po4, unx
  6. Domain d2pmuf_: 2pmu F: [205548]
    automated match to d1gxpb_
    complexed with cl, gly, k, po4, unx
Salmonella typhimurium [TaxId:602] [267786] (1 PDB entry)
- Domain for 2jpc:
  - Domain d2jpca_: 2jpc A: [264340]
    automated match to d2rnja_
Staphylococcus aureus [TaxId:1280] [225593] (4 PDB entries)
1. Domain for 2rnj:
  - Domain d2rnja_: 2rnj A: [243728]
    automated match to d1zlja_
2. Domains for 2z9m:
  1. Domain d2z9ma_: 2z9m A: [304800]
    automated match to d2d1va_
  2. Domain d2z9mb_: 2z9m B: [304801]
    automated match to d2d1va_
3. Domains for 2zxj:
  1. Domain d2zxja_: 2zxj A: [207996]
    automated match to d1gxqa_
  2. Domain d2zxjb_: 2zxj B: [207997]
    automated match to d1gxqa_
4. Domains for 4qwq:
  1. Domain d4qwqa_: 4qwq A: [276149]
    automated match to d4ixaa_
  2. Domain d4qwqb_: 4qwq B: [276251]
    automated match to d4ixaa_
Staphylococcus aureus [TaxId:1458279] [275992] (1 PDB entry)
- Domains for 4u88:
  1. Domain d4u88a_: 4u88 A: [275993]
    automated match to d4ixaa_
  2. Domain d4u88b_: 4u88 B: [275994]
    automated match to d4ixaa_
Staphylococcus epidermidis [TaxId:176280] [236417] (1 PDB entry)
- Domains for 4ixa:
  1. Domain d4ixaa_: 4ixa A: [240272]
    automated match to d4ixab_
  2. Domain d4ixab_: 4ixa B: [236418]
    automated match to d2z33a1
Streptococcus pyogenes [TaxId:1314] [226362] (1 PDB entry)
- Domain for 3rjp:
  - Domain d3rjpa_: 3rjp A: [215897]
    automated match to d1gxpb_
Escherichia coli [TaxId:83333] [315476] (2 PDB entries)
1. Domains for 4uht:
  1. Domain d4uhta_: 4uht A: [315477]
    automated match to d3q9vb_
    complexed with cl
  2. Domain d4uhtb_: 4uht B: [315478]
    automated match to d3q9vb_
    complexed with cl
2. Domain for 5ju7:
  - Domain d5ju7a1: 5ju7 A:2-107 [333480]
    Other proteins in same PDB: d5ju7a2
    automated match to d4nhjb_
    complexed with zn
Streptococcus agalactiae [TaxId:1311] [319313] (1 PDB entry)
- Domains for 5dcm:
  1. Domain d5dcmb1: 5dcm B:127-221 [319314]
    Other proteins in same PDB: d5dcma2, d5dcmb2
    automated match to d2jpba_
  2. Domain d5dcma1: 5dcm A:128-221 [319339]
    Other proteins in same PDB: d5dcma2, d5dcmb2
    automated match to d3q9vb_
Acinetobacter baumannii [TaxId:575584] [328679] (1 PDB entry)
- Domain for 2naz:
  - Domain d2naza_: 2naz A: [328680]
    automated match to d4nhjb_

More info for Protein automated matches from a.4.6.0: automated matches

Timeline for Protein automated matches from a.4.6.0: automated matches:

Protein automated matches from a.4.6.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from a.4.6.0: automated matches appears in SCOPe 2.05