Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1981147Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. 1984099Superfamily a.4.6: C-terminal effector domain of the bipartite response regulators [46894] (4 families) (S)
    binds to DNA and RNA polymerase; the N-terminal, receiver domain belongs to the CheY family
  5. 1984185Family a.4.6.0: automated matches [191513] (1 protein)
    not a true family
  6. 1984186Protein automated matches [190858] (17 species)
    not a true protein

Species:

  1. 1984187Bacillus subtilis [TaxId:1423] [225130] (3 PDB entries)
    1. Domain for 2d1v:
    2. Domains for 2krf:
      1. 1984190Domain d2krfa_: 2krf A: [264359]
        automated match to d2rnja_
      2. 1984191Domain d2krfb_: 2krf B: [264360]
        automated match to d2rnja_
    3. Domain for 3ulq:
  2. 1984192Deinococcus radiodurans [TaxId:1299] [226279] (2 PDB entries)
    1. Domain for 3q9s:
    2. Domains for 3q9v:
      1. 1984193Domain d3q9va_: 3q9v A: [248810]
        automated match to d2pmub_
      2. 1984194Domain d3q9vb_: 3q9v B: [248811]
        automated match to d2pmub_
  3. 1984196Enterococcus faecalis [TaxId:226185] [230777] (1 PDB entry)
  4. 1984198Escherichia coli K-12 [TaxId:83333] [226337] (1 PDB entry)
  5. 1984200Helicobacter pylori [TaxId:85963] [255221] (3 PDB entries)
    1. Domain for 2hqn:
    2. Domains for 2hqr:
      1. 1984202Domain d2hqra2: 2hqr A:118-223 [242057]
        Other proteins in same PDB: d2hqra1, d2hqrb1
        automated match to d1kgsa1
      2. 1984203Domain d2hqrb2: 2hqr B:118-223 [242059]
        Other proteins in same PDB: d2hqra1, d2hqrb1
        automated match to d1kgsa1
    3. Domain for 2k4j:
  6. 1984205Klebsiella pneumoniae [TaxId:1185418] [255488] (1 PDB entry)
  7. 1984207Klebsiella pneumoniae [TaxId:573] [255310] (3 PDB entries)
    1. Domain for 2jzy:
    2. Domain for 2mlk:
    3. Domains for 4nhj:
      1. 1984208Domain d4nhja_: 4nhj A: [257989]
        automated match to d3zq7a_
        protein/DNA complex
      2. 1984209Domain d4nhjb_: 4nhj B: [257990]
        automated match to d3zq7a_
        protein/DNA complex
  8. 1984212Mycobacterium tuberculosis [TaxId:1773] [188191] (3 PDB entries)
    1. Domains for 1zlj:
      1. 1984215Domain d1zlja_: 1zlj A: [162519]
        Other proteins in same PDB: d1zljb2, d1zljf2
        automated match to d1fsea_
      2. 1984216Domain d1zljb1: 1zlj B:144-209 [162520]
        Other proteins in same PDB: d1zljb2, d1zljf2
        automated match to d1fsea_
      3. 1984217Domain d1zljc_: 1zlj C: [162521]
        Other proteins in same PDB: d1zljb2, d1zljf2
        automated match to d1fsea_
      4. 1984218Domain d1zljd_: 1zlj D: [162522]
        Other proteins in same PDB: d1zljb2, d1zljf2
        automated match to d1fsea_
      5. 1984219Domain d1zlje_: 1zlj E: [162523]
        Other proteins in same PDB: d1zljb2, d1zljf2
        automated match to d1fsea_
      6. 1984220Domain d1zljf1: 1zlj F:144-209 [162524]
        Other proteins in same PDB: d1zljb2, d1zljf2
        automated match to d1fsea_
      7. 1984221Domain d1zljg_: 1zlj G: [162525]
        Other proteins in same PDB: d1zljb2, d1zljf2
        automated match to d1fsea_
      8. 1984222Domain d1zljh_: 1zlj H: [162526]
        Other proteins in same PDB: d1zljb2, d1zljf2
        automated match to d1fsea_
    2. Domains for 1zlk:
      1. 1984223Domain d1zlka_: 1zlk A: [241141]
        automated match to d1zljb_
        protein/DNA complex
      2. 1984224Domain d1zlkb_: 1zlk B: [241142]
        automated match to d1zljb_
        protein/DNA complex
    3. Domains for 3c57:
      1. 1984213Domain d3c57a_: 3c57 A: [199160]
        automated match to d3c57b_
      2. 1984214Domain d3c57b_: 3c57 B: [195256]
        automated match to d1zljb_
  9. 1984225Mycobacterium tuberculosis [TaxId:83332] [225356] (2 PDB entries)
    1. Domain for 2oqr:
    2. Domains for 2pmu:
      1. 1984226Domain d2pmua_: 2pmu A: [205543]
        automated match to d1gxpb_
        complexed with cl, gly, k, po4, unx
      2. 1984227Domain d2pmub_: 2pmu B: [205544]
        automated match to d1gxpb_
        complexed with cl, gly, k, po4, unx
      3. 1984228Domain d2pmuc_: 2pmu C: [205545]
        automated match to d1gxpb_
        complexed with cl, gly, k, po4, unx
      4. 1984229Domain d2pmud_: 2pmu D: [205546]
        automated match to d1gxpb_
        complexed with cl, gly, k, po4, unx
      5. 1984230Domain d2pmue_: 2pmu E: [205547]
        automated match to d1gxpb_
        complexed with cl, gly, k, po4, unx
      6. 1984231Domain d2pmuf_: 2pmu F: [205548]
        automated match to d1gxpb_
        complexed with cl, gly, k, po4, unx
  10. 1984233Salmonella typhimurium [TaxId:602] [267786] (1 PDB entry)
  11. 1984235Staphylococcus aureus [TaxId:1280] [225593] (4 PDB entries)
    1. Domain for 2rnj:
    2. Domains for 2z9m:
      1. 1984238Domain d2z9ma_: 2z9m A: [304800]
        automated match to d2d1va_
      2. 1984239Domain d2z9mb_: 2z9m B: [304801]
        automated match to d2d1va_
    3. Domains for 2zxj:
      1. 1984236Domain d2zxja_: 2zxj A: [207996]
        automated match to d1gxqa_
      2. 1984237Domain d2zxjb_: 2zxj B: [207997]
        automated match to d1gxqa_
    4. Domains for 4qwq:
      1. 1984240Domain d4qwqa_: 4qwq A: [276149]
        automated match to d4ixaa_
      2. 1984241Domain d4qwqb_: 4qwq B: [276251]
        automated match to d4ixaa_
  12. 1984243Staphylococcus aureus [TaxId:1458279] [275992] (1 PDB entry)
  13. 1984246Staphylococcus epidermidis [TaxId:176280] [236417] (1 PDB entry)
  14. 1984249Streptococcus pyogenes [TaxId:1314] [226362] (1 PDB entry)
  15. 2272175Escherichia coli [TaxId:83333] [315476] (2 PDB entries)
    1. Domains for 4uht:
      1. 2272176Domain d4uhta_: 4uht A: [315477]
        automated match to d3q9vb_
        complexed with cl
      2. 2272177Domain d4uhtb_: 4uht B: [315478]
        automated match to d3q9vb_
        complexed with cl
    2. Domain for 5ju7:
  16. 2276012Streptococcus agalactiae [TaxId:1311] [319313] (1 PDB entry)
  17. 2285378Acinetobacter baumannii [TaxId:575584] [328679] (1 PDB entry)

More info for Protein automated matches from a.4.6.0: automated matches

Timeline for Protein automated matches from a.4.6.0: automated matches: