Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2409884Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2410108Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2410109Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 protein domains)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. 2410393Protein automated matches [190854] (15 species)
    not a true protein

Species:

  1. 2410394Coxsackievirus a16 (strain tainan/5079/98) [TaxId:231417] [277504] (1 PDB entry)
  2. 2410396Coxsackievirus a16 [TaxId:31704] [276274] (3 PDB entries)
    1. Domain for 5abj:
    2. Domain for 5c4w:
    3. Domain for 5c9a:
  3. 2410400Coxsackievirus a24 [TaxId:12089] [260750] (4 PDB entries)
    1. Domains for 4q4v:
      1. 2410407Domain d4q4v1_: 4q4v 1: [267264]
        automated match to d2plv1_
      2. 2410408Domain d4q4v3_: 4q4v 3: [267265]
        automated match to d4q4y3_
    2. Domains for 4q4w:
      1. 2410401Domain d4q4w1_: 4q4w 1: [267266]
        automated match to d2plv1_
        complexed with ca, cl, hez
      2. 2410402Domain d4q4w3_: 4q4w 3: [267267]
        automated match to d4q4y3_
        complexed with ca, cl, hez
    3. Domains for 4q4x:
      1. 2410403Domain d4q4x1_: 4q4x 1: [260751]
        automated match to d2plv1_
        complexed with ca, cl, hez, na, sia
      2. 2410404Domain d4q4x3_: 4q4x 3: [263630]
        automated match to d4q4y3_
        complexed with ca, cl, hez, na, sia
    4. Domains for 4q4y:
      1. 2410405Domain d4q4y1_: 4q4y 1: [263631]
        automated match to d2plv1_
        complexed with ca, cl, hez, mg, myr, sia
      2. 2410406Domain d4q4y3_: 4q4y 3: [260752]
        automated match to d1hxs3_
        complexed with ca, cl, hez, mg, myr, sia
  4. 2410409Coxsackievirus a6 [TaxId:86107] [339711] (2 PDB entries)
    1. Domain for 5xs4:
    2. Domain for 5yhq:
  5. 2410412Enterovirus e [TaxId:12064] [335693] (1 PDB entry)
  6. 2410415Foot-and-mouth disease virus - type a [TaxId:12111] [196861] (4 PDB entries)
    1. Domains for 4gh4:
      1. 2410418Domain d4gh4a_: 4gh4 A: [252214]
        automated match to d4iv1a_
      2. 2410419Domain d4gh4c_: 4gh4 C: [252215]
        automated match to d1fmd3_
    2. Domains for 4iv1:
      1. 2410416Domain d4iv1a_: 4iv1 A: [223403]
        automated match to d4iv3a_
      2. 2410417Domain d4iv1c_: 4iv1 C: [223404]
        automated match to d4iv3c_
    3. Domains for 4iv3:
      1. 2410420Domain d4iv3a_: 4iv3 A: [196862]
        automated match to d1zba1_
      2. 2410421Domain d4iv3c_: 4iv3 C: [196863]
        automated match to d1zba3_
    4. Domains for 5d8a:
      1. 2410422Domain d5d8aa_: 5d8a A: [277131]
        automated match to d1fmd1_
      2. 2410423Domain d5d8ac_: 5d8a C: [277140]
        automated match to d4iv1c_
  7. 2410424Foot-and-mouth disease virus - type o [TaxId:12118] [335439] (2 PDB entries)
    1. Domain for 5ne4:
    2. Domains for 5nem:
      1. 2410426Domain d5nem1_: 5nem 1: [335766]
        Other proteins in same PDB: d5nema1, d5nema2
        automated match to d1qqp1_
        complexed with ca, man, nag
      2. 2410427Domain d5nem3_: 5nem 3: [335685]
        Other proteins in same PDB: d5nema1, d5nema2
        automated match to d1qqp3_
        complexed with ca, man, nag
  8. 2410428Foot-and-mouth disease virus [TaxId:12110] [188180] (8 PDB entries)
    1. Domains for 1zba:
      1. 2410429Domain d1zba1_: 1zba 1: [162437]
        automated match to d1qqp1_
      2. 2410430Domain d1zba3_: 1zba 3: [162438]
        automated match to d1bbt3_
    2. Domains for 1zbe:
      1. 2410432Domain d1zbe1_: 1zbe 1: [241128]
        automated match to d1fmd1_
      2. 2410433Domain d1zbe3_: 1zbe 3: [241129]
        automated match to d1fmd3_
    3. Domain for 5ne4:
    4. Domains for 5ned:
      1. 2410434Domain d5neda_: 5ned A: [335663]
        automated match to d1fmd1_
      2. 2410435Domain d5nedc_: 5ned C: [335661]
        automated match to d1qqp3_
    5. Domains for 5nej:
      1. 2410436Domain d5nej1_: 5nej 1: [335683]
        automated match to d1fmd1_
      2. 2410437Domain d5nej3_: 5nej 3: [335671]
        automated match to d1qqp3_
    6. Domains for 5ner:
      1. 2410440Domain d5ner1_: 5ner 1: [335672]
        Other proteins in same PDB: d5nera1, d5nera2
        automated match to d1qqp1_
        complexed with ca, man, nag
      2. 2410441Domain d5ner3_: 5ner 3: [335678]
        Other proteins in same PDB: d5nera1, d5nera2
        automated match to d1qqp3_
        complexed with ca, man, nag
    7. Domains for 5net:
      1. 2410438Domain d5net1_: 5net 1: [335673]
        Other proteins in same PDB: d5neta1, d5neta2
        automated match to d1qqp1_
        complexed with ca, man, nag
      2. 2410439Domain d5net3_: 5net 3: [335707]
        Other proteins in same PDB: d5neta1, d5neta2
        automated match to d1qqp3_
        complexed with ca, man, nag
    8. Domains for 5neu:
      1. 2410442Domain d5neu1_: 5neu 1: [335656]
        Other proteins in same PDB: d5neua1, d5neua2
        automated match to d1qqp1_
        complexed with ca, mg
      2. 2410443Domain d5neu3_: 5neu 3: [335682]
        Other proteins in same PDB: d5neua1, d5neua2
        automated match to d1qqp3_
        complexed with ca, mg
  9. 2410444Foot-and-mouth disease virus [TaxId:12122] [255673] (1 PDB entry)
  10. 2410446Human coxsackievirus B3 [TaxId:12072] [194627] (1 PDB entry)
  11. 2410448Human echovirus 7 [TaxId:46018] [255678] (1 PDB entry)
  12. 2410451Human enterovirus 71 [TaxId:39054] [195913] (11 PDB entries)
    1. Domain for 3vbf:
    2. Domain for 3vbh:
    3. Domain for 3zfe:
    4. Domain for 4cdq:
    5. Domain for 4cdu:
    6. Domain for 4cdw:
    7. Domain for 4cdx:
    8. Domain for 4cew:
    9. Domain for 4cey:
    10. Domains for 4rqp:
      1. 2410465Domain d4rqpb_: 4rqp B: [261955]
        Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
        automated match to d3vbhc_
      2. 2410466Domain d4rqpf_: 4rqp F: [261954]
        Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
        automated match to d3vbhc_
      3. 2410467Domain d4rqpj_: 4rqp J: [261957]
        Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
        automated match to d3vbhc_
      4. 2410468Domain d4rqpn_: 4rqp N: [261961]
        Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
        automated match to d3vbhc_
      5. 2410469Domain d4rqpr_: 4rqp R: [261966]
        Other proteins in same PDB: d4rqpc_, d4rqpg_, d4rqpk_, d4rqpo_
        automated match to d3vbhc_
    11. Domains for 4rr3:
      1. 2410460Domain d4rr3b_: 4rr3 B: [267406]
        automated match to d3vbhc_
      2. 2410461Domain d4rr3f_: 4rr3 F: [267407]
        automated match to d3vbhc_
      3. 2410462Domain d4rr3j_: 4rr3 J: [267408]
        automated match to d3vbhc_
      4. 2410463Domain d4rr3n_: 4rr3 N: [267409]
        automated match to d3vbhc_
      5. 2410464Domain d4rr3r_: 4rr3 R: [267410]
        automated match to d3vbhc_
  13. 2410471Human rhinovirus 14 [TaxId:12131] [258112] (2 PDB entries)
    1. Domains for 4pdw:
      1. 2410472Domain d4pdwa_: 4pdw A: [258113]
        automated match to d1k5ma_
        complexed with 2xk, gol
      2. 2410473Domain d4pdwc_: 4pdw C: [258114]
        automated match to d1rhi3_
        complexed with 2xk, gol
    2. Domain for 5w3o:
  14. 2410475Human rhinovirus 2 [TaxId:12130] [256100] (1 PDB entry)
  15. 2410477Saffold virus [TaxId:434309] [318368] (2 PDB entries)
    1. Domains for 5cfc:
      1. 2410480Domain d5cfca_: 5cfc A: [318440]
        automated match to d1tme1_
      2. 2410481Domain d5cfcb_: 5cfc B: [318369]
        automated match to d1tmf3_
    2. Domains for 5cfd:
      1. 2410478Domain d5cfda_: 5cfd A: [318593]
        automated match to d1tme1_
      2. 2410479Domain d5cfdb_: 5cfd B: [318483]
        automated match to d1tmf3_

More info for Protein automated matches from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

Timeline for Protein automated matches from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4):