SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2089162Superfamily c.1.16: Bacterial luciferase-like [51679] (5 families) (S)
    consists of clearly related families of somewhat different folds
  5. 2089216Family c.1.16.0: automated matches [191510] (1 protein)
    not a true family
  6. 2089217Protein automated matches [190849] (7 species)
    not a true protein

Species:

  1. 2089218Bacillus cereus [TaxId:222523] [226123] (1 PDB entry)
  2. 2089221Burkholderia pseudomallei [TaxId:320372] [189999] (1 PDB entry)
  3. 2089224Geobacillus thermodenitrificans [TaxId:33940] [225395] (2 PDB entries)
    1. Domains for 3b9n:
      1. 2089227Domain d3b9na_: 3b9n A: [208572]
        automated match to d3sdoa_
      2. 2089228Domain d3b9nb_: 3b9n B: [208573]
        automated match to d3sdoa_
    2. Domains for 3b9o:
      1. 2089225Domain d3b9oa_: 3b9o A: [208574]
        automated match to d3sdoa_
        complexed with fmn
      2. 2089226Domain d3b9ob_: 3b9o B: [208575]
        automated match to d3sdoa_
        complexed with fmn
  4. 2089229Methanosarcina barkeri [TaxId:2208] [188169] (1 PDB entry)
  5. 2089234Mycobacterium tuberculosis [TaxId:83332] [225443] (2 PDB entries)
    1. Domains for 3b4y:
      1. 2089235Domain d3b4ya_: 3b4y A: [208534]
        automated match to d1rhca_
        complexed with f42, flc
      2. 2089236Domain d3b4yb_: 3b4y B: [208535]
        automated match to d1rhca_
        complexed with f42, flc
    2. Domains for 3c8n:
      1. 2089237Domain d3c8na1: 3c8n A:1-334 [208816]
        Other proteins in same PDB: d3c8na2
        automated match to d1rhca_
      2. 2089238Domain d3c8nb_: 3c8n B: [208817]
        Other proteins in same PDB: d3c8na2
        automated match to d1rhca_
      3. 2089239Domain d3c8nc_: 3c8n C: [208818]
        Other proteins in same PDB: d3c8na2
        automated match to d1rhca_
      4. 2089240Domain d3c8nd_: 3c8n D: [208819]
        Other proteins in same PDB: d3c8na2
        automated match to d1rhca_
  6. 2270397Edta-degrading bacterium [TaxId:85561] [313702] (1 PDB entry)
  7. 2284351Rhodococcus jostii [TaxId:101510] [327652] (1 PDB entry)

More info for Protein automated matches from c.1.16.0: automated matches

Timeline for Protein automated matches from c.1.16.0: automated matches: