Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2176343Fold d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
    core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
  4. 2176344Superfamily d.14.1: Ribosomal protein S5 domain 2-like [54211] (13 families) (S)
  5. 2177072Family d.14.1.0: automated matches [191504] (1 protein)
    not a true family
  6. 2177073Protein automated matches [190826] (17 species)
    not a true protein

Species:

  1. 2177074Archaeoglobus fulgidus [TaxId:2234] [225000] (7 PDB entries)
    1. Domain for 1z0b:
    2. Domain for 1z0c:
    3. Domains for 1z0e:
      1. 2177078Domain d1z0ea_: 1z0e A: [203270]
        automated match to d1xhka_
      2. 2177079Domain d1z0eb_: 1z0e B: [203271]
        automated match to d1xhka_
      3. 2177080Domain d1z0ec_: 1z0e C: [203272]
        automated match to d1xhka_
      4. 2177081Domain d1z0ed_: 1z0e D: [203273]
        automated match to d1xhka_
      5. 2177082Domain d1z0ee_: 1z0e E: [203274]
        automated match to d1xhka_
      6. 2177083Domain d1z0ef_: 1z0e F: [203275]
        automated match to d1xhka_
    4. Domains for 1z0g:
      1. 2177084Domain d1z0ga_: 1z0g A: [203276]
        automated match to d1xhka_
      2. 2177085Domain d1z0gb_: 1z0g B: [203277]
        automated match to d1xhka_
      3. 2177086Domain d1z0gc_: 1z0g C: [203278]
        automated match to d1xhka_
      4. 2177087Domain d1z0gd_: 1z0g D: [203279]
        automated match to d1xhka_
      5. 2177088Domain d1z0ge_: 1z0g E: [203280]
        automated match to d1xhka_
      6. 2177089Domain d1z0gf_: 1z0g F: [203281]
        automated match to d1xhka_
    5. Domains for 1z0t:
      1. 2177090Domain d1z0ta_: 1z0t A: [241088]
        automated match to d1z0wa_
      2. 2177091Domain d1z0tb_: 1z0t B: [241089]
        automated match to d1z0wa_
      3. 2177092Domain d1z0tc_: 1z0t C: [241090]
        automated match to d1z0wa_
      4. 2177093Domain d1z0td_: 1z0t D: [241091]
        automated match to d1z0wa_
      5. 2177094Domain d1z0te_: 1z0t E: [241092]
        automated match to d1z0wa_
      6. 2177095Domain d1z0tf_: 1z0t F: [241093]
        automated match to d1z0wa_
    6. Domains for 1z0v:
      1. 2177096Domain d1z0va_: 1z0v A: [241094]
        automated match to d1z0wa_
      2. 2177097Domain d1z0vb_: 1z0v B: [241095]
        automated match to d1z0wa_
      3. 2177098Domain d1z0vc_: 1z0v C: [241096]
        automated match to d1z0wa_
      4. 2177099Domain d1z0vd_: 1z0v D: [241097]
        automated match to d1z0wa_
      5. 2177100Domain d1z0ve_: 1z0v E: [241098]
        automated match to d1z0wa_
      6. 2177101Domain d1z0vf_: 1z0v F: [241099]
        automated match to d1z0wa_
    7. Domain for 1z0w:
  2. 2177102Bacillus subtilis [TaxId:1423] [236144] (1 PDB entry)
  3. 2177104Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255013] (5 PDB entries)
    1. Domains for 1zm2:
      1. 2177110Domain d1zm2a3: 1zm2 A:561-725 [125282]
        Other proteins in same PDB: d1zm2a1, d1zm2a2, d1zm2a4, d1zm2a5, d1zm2b_, d1zm2c1, d1zm2c2, d1zm2c4, d1zm2c5, d1zm2d_, d1zm2e1, d1zm2e2, d1zm2e4, d1zm2e5, d1zm2f_
        automated match to d1n0ua3
        complexed with apr
      2. 2177111Domain d1zm2c3: 1zm2 C:561-725 [125288]
        Other proteins in same PDB: d1zm2a1, d1zm2a2, d1zm2a4, d1zm2a5, d1zm2b_, d1zm2c1, d1zm2c2, d1zm2c4, d1zm2c5, d1zm2d_, d1zm2e1, d1zm2e2, d1zm2e4, d1zm2e5, d1zm2f_
        automated match to d1n0ua3
        complexed with apr
      3. 2177112Domain d1zm2e3: 1zm2 E:561-725 [125294]
        Other proteins in same PDB: d1zm2a1, d1zm2a2, d1zm2a4, d1zm2a5, d1zm2b_, d1zm2c1, d1zm2c2, d1zm2c4, d1zm2c5, d1zm2d_, d1zm2e1, d1zm2e2, d1zm2e4, d1zm2e5, d1zm2f_
        automated match to d1n0ua3
        complexed with apr
    2. Domains for 1zm3:
      1. 2177113Domain d1zm3a3: 1zm3 A:561-725 [125300]
        Other proteins in same PDB: d1zm3a1, d1zm3a2, d1zm3a4, d1zm3a5, d1zm3b_, d1zm3c1, d1zm3c2, d1zm3c4, d1zm3c5, d1zm3d_, d1zm3e1, d1zm3e2, d1zm3e4, d1zm3e5, d1zm3f_
        automated match to d1n0ua3
      2. 2177114Domain d1zm3c3: 1zm3 C:561-725 [125306]
        Other proteins in same PDB: d1zm3a1, d1zm3a2, d1zm3a4, d1zm3a5, d1zm3b_, d1zm3c1, d1zm3c2, d1zm3c4, d1zm3c5, d1zm3d_, d1zm3e1, d1zm3e2, d1zm3e4, d1zm3e5, d1zm3f_
        automated match to d1n0ua3
      3. 2177115Domain d1zm3e3: 1zm3 E:561-725 [125312]
        Other proteins in same PDB: d1zm3a1, d1zm3a2, d1zm3a4, d1zm3a5, d1zm3b_, d1zm3c1, d1zm3c2, d1zm3c4, d1zm3c5, d1zm3d_, d1zm3e1, d1zm3e2, d1zm3e4, d1zm3e5, d1zm3f_
        automated match to d1n0ua3
    3. Domain for 2e1r:
    4. Domain for 2wp8:
    5. Domains for 2zit:
      1. 2177105Domain d2zita4: 2zit A:561-725 [239067]
        Other proteins in same PDB: d2zita1, d2zita2, d2zita3, d2zita5, d2zitb2, d2zitb3, d2zitc1, d2zitc2, d2zitc3, d2zitc5, d2zitd2, d2zitd3, d2zite1, d2zite2, d2zite3, d2zite5, d2zitf2, d2zitf3
        automated match to d1n0ua3
        protein/RNA complex; complexed with nad
      2. 2177106Domain d2zitc4: 2zit C:561-725 [239072]
        Other proteins in same PDB: d2zita1, d2zita2, d2zita3, d2zita5, d2zitb2, d2zitb3, d2zitc1, d2zitc2, d2zitc3, d2zitc5, d2zitd2, d2zitd3, d2zite1, d2zite2, d2zite3, d2zite5, d2zitf2, d2zitf3
        automated match to d1n0ua3
        protein/RNA complex; complexed with nad
      3. 2177107Domain d2zite4: 2zit E:561-725 [239077]
        Other proteins in same PDB: d2zita1, d2zita2, d2zita3, d2zita5, d2zitb2, d2zitb3, d2zitc1, d2zitc2, d2zitc3, d2zitc5, d2zitd2, d2zitd3, d2zite1, d2zite2, d2zite3, d2zite5, d2zitf2, d2zitf3
        automated match to d1n0ua3
        protein/RNA complex; complexed with nad
  4. 2177116Escherichia coli [TaxId:562] [255192] (4 PDB entries)
    1. Domains for 2gq0:
      1. 2177117Domain d2gq0a_: 2gq0 A: [241947]
        automated match to d3pryc_
      2. 2177118Domain d2gq0b_: 2gq0 B: [241948]
        automated match to d3pryc_
    2. Domain for 4prv:
    3. Domain for 4prx:
    4. Domain for 4pu9:
  5. 2177122Escherichia coli [TaxId:83333] [271300] (5 PDB entries)
    1. Domain for 2ljp:
    2. Domain for 4wub:
    3. Domain for 4wuc:
    4. Domain for 4wud:
    5. Domain for 4xtj:
  6. 2177128Francisella tularensis [TaxId:376619] [226592] (4 PDB entries)
    1. Domain for 4hxz:
    2. Domain for 4hy1:
    3. Domain for 4hym:
    4. Domain for 4kqv:
  7. 2177133Human (Homo sapiens) [TaxId:9606] [189350] (4 PDB entries)
    1. Domains for 1zxm:
      1. 2177134Domain d1zxma2: 1zxm A:266-405 [203367]
        Other proteins in same PDB: d1zxma1, d1zxmb1
        automated match to d1pvgb1
        complexed with anp, mg
      2. 2177135Domain d1zxmb2: 1zxm B:266-411 [203369]
        Other proteins in same PDB: d1zxma1, d1zxmb1
        automated match to d1pvgb1
        complexed with anp, mg
    2. Domains for 1zxn:
      1. 2177144Domain d1zxna2: 1zxn A:266-422 [230472]
        Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1
        automated match to d1zxmb2
        complexed with adp, gol, mg, so4
      2. 2177145Domain d1zxnb2: 1zxn B:266-424 [230474]
        Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1
        automated match to d1zxmb2
        complexed with adp, gol, mg, so4
      3. 2177146Domain d1zxnc2: 1zxn C:266-426 [230476]
        Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1
        automated match to d1zxmb2
        complexed with adp, gol, mg, so4
      4. 2177147Domain d1zxnd2: 1zxn D:266-425 [230478]
        Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1
        automated match to d1zxmb2
        complexed with adp, gol, mg, so4
    3. Domains for 2x36:
      1. 2177136Domain d2x36a_: 2x36 A: [192755]
        automated match to d1xhkb_
      2. 2177137Domain d2x36b_: 2x36 B: [192758]
        automated match to d1xhkb_
      3. 2177138Domain d2x36c_: 2x36 C: [192757]
        automated match to d1xhkb_
      4. 2177139Domain d2x36d_: 2x36 D: [169837]
        automated match to d1rr9e_
      5. 2177140Domain d2x36e_: 2x36 E: [192759]
        automated match to d1xhkb_
      6. 2177141Domain d2x36f_: 2x36 F: [192756]
        automated match to d1xhkb_
    4. Domains for 3d4j:
      1. 2177142Domain d3d4ja1: 3d4j A:8-193 [208989]
        Other proteins in same PDB: d3d4ja2, d3d4jb2
        automated match to d1fi4a1
        complexed with so4
      2. 2177143Domain d3d4jb1: 3d4j B:9-193 [208991]
        Other proteins in same PDB: d3d4ja2, d3d4jb2
        automated match to d1fi4a1
        complexed with so4
  8. 2177148Methanothermobacter thermautotrophicus [TaxId:145262] [225885] (1 PDB entry)
  9. 2177155Mouse (Mus musculus) [TaxId:10090] [225562] (1 PDB entry)
  10. 2177158Mycobacterium tuberculosis [TaxId:1773] [224917] (1 PDB entry)
  11. 2177161Mycobacterium tuberculosis [TaxId:83332] [225380] (3 PDB entries)
    1. Domains for 3b4t:
      1. 2177162Domain d3b4ta1: 3b4t A:1-151 [208521]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
      2. 2177163Domain d3b4tb1: 3b4t B:2-151 [208523]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
      3. 2177164Domain d3b4tc1: 3b4t C:2-151 [208525]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
      4. 2177165Domain d3b4td1: 3b4t D:2-151 [208527]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
      5. 2177166Domain d3b4te1: 3b4t E:1-151 [208529]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
      6. 2177167Domain d3b4tf1: 3b4t F:1-151 [208531]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
    2. Domains for 4lom:
      1. 2177168Domain d4loma1: 4lom A:10-95 [224731]
        automated match to d2f1da1
        complexed with iyp, mn
      2. 2177169Domain d4loma2: 4lom A:96-200 [224732]
        automated match to d2f1da2
        complexed with iyp, mn
    3. Domains for 4lpf:
      1. 2177170Domain d4lpfa1: 4lpf A:10-95 [224743]
        automated match to d2f1da1
        complexed with 3tr, mn
      2. 2177171Domain d4lpfa2: 4lpf A:96-199 [224744]
        automated match to d2f1da2
        complexed with 3tr, mn
  12. 2177172Myxococcus xanthus [TaxId:246197] [225453] (1 PDB entry)
  13. 2177175Plasmodium falciparum [TaxId:36329] [188127] (1 PDB entry)
  14. 2177178Pyrococcus abyssi [TaxId:29292] [225427] (4 PDB entries)
    1. Domains for 2pnz:
      1. 2177181Domain d2pnza1: 2pnz A:9-153 [205559]
        Other proteins in same PDB: d2pnza2, d2pnzb2
        automated match to d2nn6b1
        complexed with 5gp, mpd, udp
      2. 2177182Domain d2pnzb1: 2pnz B:8-187 [238804]
        Other proteins in same PDB: d2pnza2, d2pnzb2
        automated match to d2wnra1
        complexed with 5gp, mpd, udp
    2. Domains for 2po0:
      1. 2177183Domain d2po0a1: 2po0 A:9-153 [205561]
        Other proteins in same PDB: d2po0a2, d2po0b2
        automated match to d2nn6b1
        complexed with adp, mpd
      2. 2177184Domain d2po0b1: 2po0 B:8-187 [238806]
        Other proteins in same PDB: d2po0a2, d2po0b2
        automated match to d2wnra1
        complexed with adp, mpd
    3. Domains for 2po1:
      1. 2177179Domain d2po1a1: 2po1 A:9-153 [205563]
        Other proteins in same PDB: d2po1a2, d2po1b2
        automated match to d2nn6b1
        protein/RNA complex; complexed with mpd
      2. 2177180Domain d2po1b1: 2po1 B:8-187 [238808]
        Other proteins in same PDB: d2po1a2, d2po1b2
        automated match to d2wnra1
        protein/RNA complex; complexed with mpd
    4. Domains for 2po2:
      1. 2177185Domain d2po2a1: 2po2 A:9-153 [205565]
        Other proteins in same PDB: d2po2a2, d2po2b2
        automated match to d2nn6b1
        complexed with cdp, mpd
      2. 2177186Domain d2po2b1: 2po2 B:8-187 [238810]
        Other proteins in same PDB: d2po2a2, d2po2b2
        automated match to d2wnra1
        complexed with cdp, mpd
  15. 2177187Pyrococcus horikoshii [TaxId:53953] [225134] (3 PDB entries)
    1. Domain for 2cz9:
    2. Domain for 2dei:
    3. Domain for 2dej:
  16. 2177191Thale cress (Arabidopsis thaliana) [TaxId:3702] [259809] (9 PDB entries)
    1. Domain for 4mu0:
    2. Domain for 4mu1:
    3. Domain for 4mu3:
    4. Domain for 4mu4:
    5. Domain for 4qnj:
    6. Domains for 4qnk:
      1. 2177200Domain d4qnka1: 4qnk A:9-95 [274247]
        Other proteins in same PDB: d4qnka2, d4qnkb2, d4qnkc2, d4qnkd2, d4qnke2, d4qnkf2, d4qnkg2, d4qnkh2
        automated match to d4mu3a1
        complexed with edo, mn, na, po4
      2. 2177201Domain d4qnkb1: 4qnk B:9-95 [274259]
        Other proteins in same PDB: d4qnka2, d4qnkb2, d4qnkc2, d4qnkd2, d4qnke2, d4qnkf2, d4qnkg2, d4qnkh2
        automated match to d4mu3a1
        complexed with edo, mn, na, po4
      3. 2177202Domain d4qnkc1: 4qnk C:9-95 [274257]
        Other proteins in same PDB: d4qnka2, d4qnkb2, d4qnkc2, d4qnkd2, d4qnke2, d4qnkf2, d4qnkg2, d4qnkh2
        automated match to d4mu3a1
        complexed with edo, mn, na, po4
      4. 2177203Domain d4qnkd1: 4qnk D:9-95 [274253]
        Other proteins in same PDB: d4qnka2, d4qnkb2, d4qnkc2, d4qnkd2, d4qnke2, d4qnkf2, d4qnkg2, d4qnkh2
        automated match to d4mu3a1
        complexed with edo, mn, na, po4
      5. 2177204Domain d4qnke1: 4qnk E:9-95 [274255]
        Other proteins in same PDB: d4qnka2, d4qnkb2, d4qnkc2, d4qnkd2, d4qnke2, d4qnkf2, d4qnkg2, d4qnkh2
        automated match to d4mu3a1
        complexed with edo, mn, na, po4
      6. 2177205Domain d4qnkf1: 4qnk F:10-95 [274249]
        Other proteins in same PDB: d4qnka2, d4qnkb2, d4qnkc2, d4qnkd2, d4qnke2, d4qnkf2, d4qnkg2, d4qnkh2
        automated match to d4mu3a1
        complexed with edo, mn, na, po4
      7. 2177206Domain d4qnkg1: 4qnk G:9-95 [274243]
        Other proteins in same PDB: d4qnka2, d4qnkb2, d4qnkc2, d4qnkd2, d4qnke2, d4qnkf2, d4qnkg2, d4qnkh2
        automated match to d4mu3a1
        complexed with edo, mn, na, po4
      8. 2177207Domain d4qnkh1: 4qnk H:9-95 [274245]
        Other proteins in same PDB: d4qnka2, d4qnkb2, d4qnkc2, d4qnkd2, d4qnke2, d4qnkf2, d4qnkg2, d4qnkh2
        automated match to d4mu3a1
        complexed with edo, mn, na, po4
    7. Domain for 5ekw:
    8. Domain for 5el9:
    9. Domain for 5elw:
  17. 2177208Xanthomonas oryzae [TaxId:291331] [226076] (2 PDB entries)
    1. Domain for 3lnu:
    2. Domain for 3lps:

More info for Protein automated matches from d.14.1.0: automated matches

Timeline for Protein automated matches from d.14.1.0: automated matches: