Class d: Alpha and beta proteins (a+b) [53931] (380 folds) |
Fold d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily) core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover |
Superfamily d.14.1: Ribosomal protein S5 domain 2-like [54211] (13 families) |
Family d.14.1.0: automated matches [191504] (1 protein) not a true family |
Protein automated matches [190826] (16 species) not a true protein |
Arabidopsis thaliana [TaxId:3702] [259809] (3 PDB entries) |
Domain d4mu0a1: 4mu0 A:9-95 [259814] Other proteins in same PDB: d4mu0a2 automated match to d2f1da1 complexed with cl, edo, mn, tri, trs |
Domain d4mu1a1: 4mu1 A:9-95 [259816] Other proteins in same PDB: d4mu1a2 automated match to d2f1da1 complexed with edo, imd, mn, so4 |
Domain d4mu3a1: 4mu3 A:9-95 [259810] Other proteins in same PDB: d4mu3a2 automated match to d2f1da1 complexed with edo, ig2, iyp, mn; mutant |
Archaeoglobus fulgidus [TaxId:2234] [225000] (7 PDB entries) |
Domain d1z0ba_: 1z0b A: [203268] automated match to d1xhka_ complexed with ca; mutant |
Domain d1z0ca_: 1z0c A: [203269] automated match to d1xhka_ mutant |
Domain d1z0ea_: 1z0e A: [203270] automated match to d1xhka_ |
Domain d1z0eb_: 1z0e B: [203271] automated match to d1xhka_ |
Domain d1z0ec_: 1z0e C: [203272] automated match to d1xhka_ |
Domain d1z0ed_: 1z0e D: [203273] automated match to d1xhka_ |
Domain d1z0ee_: 1z0e E: [203274] automated match to d1xhka_ |
Domain d1z0ef_: 1z0e F: [203275] automated match to d1xhka_ |
Domain d1z0ga_: 1z0g A: [203276] automated match to d1xhka_ |
Domain d1z0gb_: 1z0g B: [203277] automated match to d1xhka_ |
Domain d1z0gc_: 1z0g C: [203278] automated match to d1xhka_ |
Domain d1z0gd_: 1z0g D: [203279] automated match to d1xhka_ |
Domain d1z0ge_: 1z0g E: [203280] automated match to d1xhka_ |
Domain d1z0gf_: 1z0g F: [203281] automated match to d1xhka_ |
Domain d1z0ta_: 1z0t A: [241088] automated match to d1z0wa_ |
Domain d1z0tb_: 1z0t B: [241089] automated match to d1z0wa_ |
Domain d1z0tc_: 1z0t C: [241090] automated match to d1z0wa_ |
Domain d1z0td_: 1z0t D: [241091] automated match to d1z0wa_ |
Domain d1z0te_: 1z0t E: [241092] automated match to d1z0wa_ |
Domain d1z0tf_: 1z0t F: [241093] automated match to d1z0wa_ |
Domain d1z0va_: 1z0v A: [241094] automated match to d1z0wa_ |
Domain d1z0vb_: 1z0v B: [241095] automated match to d1z0wa_ |
Domain d1z0vc_: 1z0v C: [241096] automated match to d1z0wa_ |
Domain d1z0vd_: 1z0v D: [241097] automated match to d1z0wa_ |
Domain d1z0ve_: 1z0v E: [241098] automated match to d1z0wa_ |
Domain d1z0vf_: 1z0v F: [241099] automated match to d1z0wa_ |
Domain d1z0wa_: 1z0w A: [203282] automated match to d1xhka_ complexed with ca |
Bacillus subtilis [TaxId:1423] [236144] (1 PDB entry) |
Domain d4jg4a_: 4jg4 A: [236145] automated match to d1d6ta_ complexed with ppv |
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255013] (5 PDB entries) |
Domain d1zm2a3: 1zm2 A:561-725 [125282] Other proteins in same PDB: d1zm2a1, d1zm2a2, d1zm2a4, d1zm2a5, d1zm2b_, d1zm2c1, d1zm2c2, d1zm2c4, d1zm2c5, d1zm2d_, d1zm2e1, d1zm2e2, d1zm2e4, d1zm2e5, d1zm2f_ automated match to d1n0ua3 complexed with apr |
Domain d1zm2c3: 1zm2 C:561-725 [125288] Other proteins in same PDB: d1zm2a1, d1zm2a2, d1zm2a4, d1zm2a5, d1zm2b_, d1zm2c1, d1zm2c2, d1zm2c4, d1zm2c5, d1zm2d_, d1zm2e1, d1zm2e2, d1zm2e4, d1zm2e5, d1zm2f_ automated match to d1n0ua3 complexed with apr |
Domain d1zm2e3: 1zm2 E:561-725 [125294] Other proteins in same PDB: d1zm2a1, d1zm2a2, d1zm2a4, d1zm2a5, d1zm2b_, d1zm2c1, d1zm2c2, d1zm2c4, d1zm2c5, d1zm2d_, d1zm2e1, d1zm2e2, d1zm2e4, d1zm2e5, d1zm2f_ automated match to d1n0ua3 complexed with apr |
Domain d1zm3a3: 1zm3 A:561-725 [125300] Other proteins in same PDB: d1zm3a1, d1zm3a2, d1zm3a4, d1zm3a5, d1zm3b_, d1zm3c1, d1zm3c2, d1zm3c4, d1zm3c5, d1zm3d_, d1zm3e1, d1zm3e2, d1zm3e4, d1zm3e5, d1zm3f_ automated match to d1n0ua3 |
Domain d1zm3c3: 1zm3 C:561-725 [125306] Other proteins in same PDB: d1zm3a1, d1zm3a2, d1zm3a4, d1zm3a5, d1zm3b_, d1zm3c1, d1zm3c2, d1zm3c4, d1zm3c5, d1zm3d_, d1zm3e1, d1zm3e2, d1zm3e4, d1zm3e5, d1zm3f_ automated match to d1n0ua3 |
Domain d1zm3e3: 1zm3 E:561-725 [125312] Other proteins in same PDB: d1zm3a1, d1zm3a2, d1zm3a4, d1zm3a5, d1zm3b_, d1zm3c1, d1zm3c2, d1zm3c4, d1zm3c5, d1zm3d_, d1zm3e1, d1zm3e2, d1zm3e4, d1zm3e5, d1zm3f_ automated match to d1n0ua3 |
Domain d2wp8b1: 2wp8 B:3-152 [244201] Other proteins in same PDB: d2wp8b2 automated match to d2nn6b1 complexed with cl, gol |
Domain d2zita4: 2zit A:561-725 [239067] Other proteins in same PDB: d2zita1, d2zita2, d2zita3, d2zita5, d2zitb_, d2zitc1, d2zitc2, d2zitc3, d2zitc5, d2zitd_, d2zite1, d2zite2, d2zite3, d2zite5, d2zitf_ automated match to d1n0ua3 protein/RNA complex; complexed with nad |
Domain d2zitc4: 2zit C:561-725 [239072] Other proteins in same PDB: d2zita1, d2zita2, d2zita3, d2zita5, d2zitb_, d2zitc1, d2zitc2, d2zitc3, d2zitc5, d2zitd_, d2zite1, d2zite2, d2zite3, d2zite5, d2zitf_ automated match to d1n0ua3 protein/RNA complex; complexed with nad |
Domain d2zite4: 2zit E:561-725 [239077] Other proteins in same PDB: d2zita1, d2zita2, d2zita3, d2zita5, d2zitb_, d2zitc1, d2zitc2, d2zitc3, d2zitc5, d2zitd_, d2zite1, d2zite2, d2zite3, d2zite5, d2zitf_ automated match to d1n0ua3 protein/RNA complex; complexed with nad |
Escherichia coli [TaxId:562] [255192] (1 PDB entry) |
Domain d2gq0a_: 2gq0 A: [241947] automated match to d3pryc_ |
Domain d2gq0b_: 2gq0 B: [241948] automated match to d3pryc_ |
Francisella tularensis [TaxId:376619] [226592] (4 PDB entries) |
Domain d4hxza2: 4hxz A:216-383 [222785] Other proteins in same PDB: d4hxza1, d4hxzb1 automated match to d1s16a1 complexed with 19y |
Domain d4hy1a2: 4hy1 A:216-377 [222788] Other proteins in same PDB: d4hy1a1, d4hy1b1 automated match to d1s16a1 complexed with 19x |
Domain d4hyma2: 4hym A:216-377 [222796] Other proteins in same PDB: d4hyma1, d4hymb1 automated match to d1s16a1 complexed with cjc |
Domain d4kqva2: 4kqv A:216-380 [236037] Other proteins in same PDB: d4kqva1, d4kqvb_ automated match to d4hxza2 protein/DNA complex; complexed with doo, iod |
Human (Homo sapiens) [TaxId:9606] [189350] (4 PDB entries) |
Domain d1zxma2: 1zxm A:266-405 [203367] Other proteins in same PDB: d1zxma1, d1zxmb1 automated match to d1pvgb1 complexed with anp, mg |
Domain d1zxmb2: 1zxm B:266-411 [203369] Other proteins in same PDB: d1zxma1, d1zxmb1 automated match to d1pvgb1 complexed with anp, mg |
Domain d1zxna2: 1zxn A:266-422 [230472] Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1 automated match to d1zxmb2 complexed with adp, gol, mg, so4 |
Domain d1zxnb2: 1zxn B:266-424 [230474] Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1 automated match to d1zxmb2 complexed with adp, gol, mg, so4 |
Domain d1zxnc2: 1zxn C:266-426 [230476] Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1 automated match to d1zxmb2 complexed with adp, gol, mg, so4 |
Domain d1zxnd2: 1zxn D:266-425 [230478] Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1 automated match to d1zxmb2 complexed with adp, gol, mg, so4 |
Domain d2x36a_: 2x36 A: [192755] automated match to d1xhkb_ |
Domain d2x36b_: 2x36 B: [192758] automated match to d1xhkb_ |
Domain d2x36c_: 2x36 C: [192757] automated match to d1xhkb_ |
Domain d2x36d_: 2x36 D: [169837] automated match to d1rr9e_ |
Domain d2x36e_: 2x36 E: [192759] automated match to d1xhkb_ |
Domain d2x36f_: 2x36 F: [192756] automated match to d1xhkb_ |
Domain d3d4ja1: 3d4j A:8-193 [208989] Other proteins in same PDB: d3d4ja2, d3d4jb2 automated match to d1fi4a1 complexed with so4 |
Domain d3d4jb1: 3d4j B:9-193 [208991] Other proteins in same PDB: d3d4ja2, d3d4jb2 automated match to d1fi4a1 complexed with so4 |
Methanothermobacter thermautotrophicus [TaxId:145262] [225885] (1 PDB entry) |
Domain d2wnra1: 2wnr A:9-187 [231462] Other proteins in same PDB: d2wnra2, d2wnrb2, d2wnrc2, d2wnrd2, d2wnre2, d2wnrf2 automated match to d2je6a1 complexed with po4 |
Domain d2wnrb1: 2wnr B:15-153 [206904] Other proteins in same PDB: d2wnra2, d2wnrb2, d2wnrc2, d2wnrd2, d2wnre2, d2wnrf2 automated match to d2nn6b1 complexed with po4 |
Domain d2wnrc1: 2wnr C:13-187 [231460] Other proteins in same PDB: d2wnra2, d2wnrb2, d2wnrc2, d2wnrd2, d2wnre2, d2wnrf2 automated match to d2je6a1 complexed with po4 |
Domain d2wnrd1: 2wnr D:16-153 [206906] Other proteins in same PDB: d2wnra2, d2wnrb2, d2wnrc2, d2wnrd2, d2wnre2, d2wnrf2 automated match to d2nn6b1 complexed with po4 |
Domain d2wnre1: 2wnr E:21-187 [231463] Other proteins in same PDB: d2wnra2, d2wnrb2, d2wnrc2, d2wnrd2, d2wnre2, d2wnrf2 automated match to d2je6a1 complexed with po4 |
Domain d2wnrf1: 2wnr F:14-153 [206908] Other proteins in same PDB: d2wnra2, d2wnrb2, d2wnrc2, d2wnrd2, d2wnre2, d2wnrf2 automated match to d2nn6b1 complexed with po4 |
Mouse (Mus musculus) [TaxId:10090] [225562] (1 PDB entry) |
Domain d3f0na1: 3f0n A:-3-193 [209755] Other proteins in same PDB: d3f0na2, d3f0nb2 automated match to d1fi4a1 complexed with po4 |
Domain d3f0nb1: 3f0n B:7-193 [209757] Other proteins in same PDB: d3f0na2, d3f0nb2 automated match to d1fi4a1 complexed with po4 |
Mycobacterium tuberculosis [TaxId:1773] [224917] (1 PDB entry) |
Domain d4gqua1: 4gqu A:10-95 [222094] automated match to d2f1da1 complexed with edo, mn |
Domain d4gqua2: 4gqu A:96-200 [222095] automated match to d2f1da2 complexed with edo, mn |
Mycobacterium tuberculosis [TaxId:83332] [225380] (3 PDB entries) |
Domain d3b4ta1: 3b4t A:1-151 [208521] Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2 automated match to d1r6la1 complexed with po4 |
Domain d3b4tb1: 3b4t B:2-151 [208523] Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2 automated match to d1r6la1 complexed with po4 |
Domain d3b4tc1: 3b4t C:2-151 [208525] Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2 automated match to d1r6la1 complexed with po4 |
Domain d3b4td1: 3b4t D:2-151 [208527] Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2 automated match to d1r6la1 complexed with po4 |
Domain d3b4te1: 3b4t E:1-151 [208529] Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2 automated match to d1r6la1 complexed with po4 |
Domain d3b4tf1: 3b4t F:1-151 [208531] Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2 automated match to d1r6la1 complexed with po4 |
Domain d4loma1: 4lom A:10-95 [224731] automated match to d2f1da1 complexed with iyp, mn |
Domain d4loma2: 4lom A:96-200 [224732] automated match to d2f1da2 complexed with iyp, mn |
Domain d4lpfa1: 4lpf A:10-95 [224743] automated match to d2f1da1 complexed with 3tr, mn |
Domain d4lpfa2: 4lpf A:96-199 [224744] automated match to d2f1da2 complexed with 3tr, mn |
Myxococcus xanthus [TaxId:246197] [225453] (1 PDB entry) |
Domain d3cwva2: 3cwv A:207-356 [208973] Other proteins in same PDB: d3cwva1, d3cwvb1 automated match to d1ei1a1 |
Domain d3cwvb2: 3cwv B:207-357 [208975] Other proteins in same PDB: d3cwva1, d3cwvb1 automated match to d1ei1a1 |
Plasmodium falciparum [TaxId:36329] [188127] (1 PDB entry) |
Domain d1y6za_: 1y6z A: [162164] automated match to d1usua_ |
Domain d1y6zb_: 1y6z B: [162165] automated match to d1usua_ |
Pyrococcus abyssi [TaxId:29292] [225427] (4 PDB entries) |
Domain d2pnza1: 2pnz A:9-153 [205559] Other proteins in same PDB: d2pnza2, d2pnzb2 automated match to d2nn6b1 complexed with 5gp, mpd, udp |
Domain d2pnzb1: 2pnz B:8-187 [238804] Other proteins in same PDB: d2pnza2, d2pnzb2 automated match to d2wnra1 complexed with 5gp, mpd, udp |
Domain d2po0a1: 2po0 A:9-153 [205561] Other proteins in same PDB: d2po0a2, d2po0b2 automated match to d2nn6b1 complexed with adp, mpd |
Domain d2po0b1: 2po0 B:8-187 [238806] Other proteins in same PDB: d2po0a2, d2po0b2 automated match to d2wnra1 complexed with adp, mpd |
Domain d2po1a1: 2po1 A:9-153 [205563] Other proteins in same PDB: d2po1a2, d2po1b2 automated match to d2nn6b1 protein/RNA complex; complexed with mpd |
Domain d2po1b1: 2po1 B:8-187 [238808] Other proteins in same PDB: d2po1a2, d2po1b2 automated match to d2wnra1 protein/RNA complex; complexed with mpd |
Domain d2po2a1: 2po2 A:9-153 [205565] Other proteins in same PDB: d2po2a2, d2po2b2 automated match to d2nn6b1 complexed with cdp, mpd |
Domain d2po2b1: 2po2 B:8-187 [238810] Other proteins in same PDB: d2po2a2, d2po2b2 automated match to d2wnra1 complexed with cdp, mpd |
Pyrococcus horikoshii [TaxId:53953] [225134] (3 PDB entries) |
Domain d2cz9a1: 2cz9 A:1-178 [203852] Other proteins in same PDB: d2cz9a2 automated match to d1s4ed1 complexed with cl, gol |
Domain d2deia1: 2dei A:1-178 [203971] Other proteins in same PDB: d2deia2 automated match to d1s4ed1 complexed with gla, map |
Domain d2deja1: 2dej A:1-178 [203973] Other proteins in same PDB: d2deja2 automated match to d1s4ed1 complexed with apw, gla |
Xanthomonas oryzae [TaxId:291331] [226076] (2 PDB entries) |
Domain d3lnua2: 3lnu A:261-422 [212977] Other proteins in same PDB: d3lnua1 automated match to d1s16a1 |
Domain d3lpsa2: 3lps A:261-422 [212988] Other proteins in same PDB: d3lpsa1 automated match to d1s16a1 complexed with nov |
Timeline for Protein automated matches from d.14.1.0: automated matches: