Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1636635Fold d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
    core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
  4. 1636636Superfamily d.14.1: Ribosomal protein S5 domain 2-like [54211] (13 families) (S)
  5. 1637334Family d.14.1.0: automated matches [191504] (1 protein)
    not a true family
  6. 1637335Protein automated matches [190826] (16 species)
    not a true protein

Species:

  1. 1637336Arabidopsis thaliana [TaxId:3702] [259809] (3 PDB entries)
    1. Domain for 4mu0:
    2. Domain for 4mu1:
    3. Domain for 4mu3:
  2. 1637340Archaeoglobus fulgidus [TaxId:2234] [225000] (7 PDB entries)
    1. Domain for 1z0b:
    2. Domain for 1z0c:
    3. Domains for 1z0e:
      1. 1637344Domain d1z0ea_: 1z0e A: [203270]
        automated match to d1xhka_
      2. 1637345Domain d1z0eb_: 1z0e B: [203271]
        automated match to d1xhka_
      3. 1637346Domain d1z0ec_: 1z0e C: [203272]
        automated match to d1xhka_
      4. 1637347Domain d1z0ed_: 1z0e D: [203273]
        automated match to d1xhka_
      5. 1637348Domain d1z0ee_: 1z0e E: [203274]
        automated match to d1xhka_
      6. 1637349Domain d1z0ef_: 1z0e F: [203275]
        automated match to d1xhka_
    4. Domains for 1z0g:
      1. 1637350Domain d1z0ga_: 1z0g A: [203276]
        automated match to d1xhka_
      2. 1637351Domain d1z0gb_: 1z0g B: [203277]
        automated match to d1xhka_
      3. 1637352Domain d1z0gc_: 1z0g C: [203278]
        automated match to d1xhka_
      4. 1637353Domain d1z0gd_: 1z0g D: [203279]
        automated match to d1xhka_
      5. 1637354Domain d1z0ge_: 1z0g E: [203280]
        automated match to d1xhka_
      6. 1637355Domain d1z0gf_: 1z0g F: [203281]
        automated match to d1xhka_
    5. Domains for 1z0t:
      1. 1637356Domain d1z0ta_: 1z0t A: [241088]
        automated match to d1z0wa_
      2. 1637357Domain d1z0tb_: 1z0t B: [241089]
        automated match to d1z0wa_
      3. 1637358Domain d1z0tc_: 1z0t C: [241090]
        automated match to d1z0wa_
      4. 1637359Domain d1z0td_: 1z0t D: [241091]
        automated match to d1z0wa_
      5. 1637360Domain d1z0te_: 1z0t E: [241092]
        automated match to d1z0wa_
      6. 1637361Domain d1z0tf_: 1z0t F: [241093]
        automated match to d1z0wa_
    6. Domains for 1z0v:
      1. 1637362Domain d1z0va_: 1z0v A: [241094]
        automated match to d1z0wa_
      2. 1637363Domain d1z0vb_: 1z0v B: [241095]
        automated match to d1z0wa_
      3. 1637364Domain d1z0vc_: 1z0v C: [241096]
        automated match to d1z0wa_
      4. 1637365Domain d1z0vd_: 1z0v D: [241097]
        automated match to d1z0wa_
      5. 1637366Domain d1z0ve_: 1z0v E: [241098]
        automated match to d1z0wa_
      6. 1637367Domain d1z0vf_: 1z0v F: [241099]
        automated match to d1z0wa_
    7. Domain for 1z0w:
  3. 1637368Bacillus subtilis [TaxId:1423] [236144] (1 PDB entry)
  4. 1637370Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255013] (5 PDB entries)
    1. Domains for 1zm2:
      1. 1637376Domain d1zm2a3: 1zm2 A:561-725 [125282]
        Other proteins in same PDB: d1zm2a1, d1zm2a2, d1zm2a4, d1zm2a5, d1zm2b_, d1zm2c1, d1zm2c2, d1zm2c4, d1zm2c5, d1zm2d_, d1zm2e1, d1zm2e2, d1zm2e4, d1zm2e5, d1zm2f_
        automated match to d1n0ua3
        complexed with apr
      2. 1637377Domain d1zm2c3: 1zm2 C:561-725 [125288]
        Other proteins in same PDB: d1zm2a1, d1zm2a2, d1zm2a4, d1zm2a5, d1zm2b_, d1zm2c1, d1zm2c2, d1zm2c4, d1zm2c5, d1zm2d_, d1zm2e1, d1zm2e2, d1zm2e4, d1zm2e5, d1zm2f_
        automated match to d1n0ua3
        complexed with apr
      3. 1637378Domain d1zm2e3: 1zm2 E:561-725 [125294]
        Other proteins in same PDB: d1zm2a1, d1zm2a2, d1zm2a4, d1zm2a5, d1zm2b_, d1zm2c1, d1zm2c2, d1zm2c4, d1zm2c5, d1zm2d_, d1zm2e1, d1zm2e2, d1zm2e4, d1zm2e5, d1zm2f_
        automated match to d1n0ua3
        complexed with apr
    2. Domains for 1zm3:
      1. 1637379Domain d1zm3a3: 1zm3 A:561-725 [125300]
        Other proteins in same PDB: d1zm3a1, d1zm3a2, d1zm3a4, d1zm3a5, d1zm3b_, d1zm3c1, d1zm3c2, d1zm3c4, d1zm3c5, d1zm3d_, d1zm3e1, d1zm3e2, d1zm3e4, d1zm3e5, d1zm3f_
        automated match to d1n0ua3
      2. 1637380Domain d1zm3c3: 1zm3 C:561-725 [125306]
        Other proteins in same PDB: d1zm3a1, d1zm3a2, d1zm3a4, d1zm3a5, d1zm3b_, d1zm3c1, d1zm3c2, d1zm3c4, d1zm3c5, d1zm3d_, d1zm3e1, d1zm3e2, d1zm3e4, d1zm3e5, d1zm3f_
        automated match to d1n0ua3
      3. 1637381Domain d1zm3e3: 1zm3 E:561-725 [125312]
        Other proteins in same PDB: d1zm3a1, d1zm3a2, d1zm3a4, d1zm3a5, d1zm3b_, d1zm3c1, d1zm3c2, d1zm3c4, d1zm3c5, d1zm3d_, d1zm3e1, d1zm3e2, d1zm3e4, d1zm3e5, d1zm3f_
        automated match to d1n0ua3
    3. Domain for 2e1r:
    4. Domain for 2wp8:
    5. Domains for 2zit:
      1. 1637371Domain d2zita4: 2zit A:561-725 [239067]
        Other proteins in same PDB: d2zita1, d2zita2, d2zita3, d2zita5, d2zitb_, d2zitc1, d2zitc2, d2zitc3, d2zitc5, d2zitd_, d2zite1, d2zite2, d2zite3, d2zite5, d2zitf_
        automated match to d1n0ua3
        protein/RNA complex; complexed with nad
      2. 1637372Domain d2zitc4: 2zit C:561-725 [239072]
        Other proteins in same PDB: d2zita1, d2zita2, d2zita3, d2zita5, d2zitb_, d2zitc1, d2zitc2, d2zitc3, d2zitc5, d2zitd_, d2zite1, d2zite2, d2zite3, d2zite5, d2zitf_
        automated match to d1n0ua3
        protein/RNA complex; complexed with nad
      3. 1637373Domain d2zite4: 2zit E:561-725 [239077]
        Other proteins in same PDB: d2zita1, d2zita2, d2zita3, d2zita5, d2zitb_, d2zitc1, d2zitc2, d2zitc3, d2zitc5, d2zitd_, d2zite1, d2zite2, d2zite3, d2zite5, d2zitf_
        automated match to d1n0ua3
        protein/RNA complex; complexed with nad
  5. 1637382Escherichia coli [TaxId:562] [255192] (1 PDB entry)
  6. 1637385Francisella tularensis [TaxId:376619] [226592] (4 PDB entries)
    1. Domain for 4hxz:
    2. Domain for 4hy1:
    3. Domain for 4hym:
    4. Domain for 4kqv:
  7. 1637390Human (Homo sapiens) [TaxId:9606] [189350] (4 PDB entries)
    1. Domains for 1zxm:
      1. 1637391Domain d1zxma2: 1zxm A:266-405 [203367]
        Other proteins in same PDB: d1zxma1, d1zxmb1
        automated match to d1pvgb1
        complexed with anp, mg
      2. 1637392Domain d1zxmb2: 1zxm B:266-411 [203369]
        Other proteins in same PDB: d1zxma1, d1zxmb1
        automated match to d1pvgb1
        complexed with anp, mg
    2. Domains for 1zxn:
      1. 1637401Domain d1zxna2: 1zxn A:266-422 [230472]
        Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1
        automated match to d1zxmb2
        complexed with adp, gol, mg, so4
      2. 1637402Domain d1zxnb2: 1zxn B:266-424 [230474]
        Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1
        automated match to d1zxmb2
        complexed with adp, gol, mg, so4
      3. 1637403Domain d1zxnc2: 1zxn C:266-426 [230476]
        Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1
        automated match to d1zxmb2
        complexed with adp, gol, mg, so4
      4. 1637404Domain d1zxnd2: 1zxn D:266-425 [230478]
        Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1
        automated match to d1zxmb2
        complexed with adp, gol, mg, so4
    3. Domains for 2x36:
      1. 1637393Domain d2x36a_: 2x36 A: [192755]
        automated match to d1xhkb_
      2. 1637394Domain d2x36b_: 2x36 B: [192758]
        automated match to d1xhkb_
      3. 1637395Domain d2x36c_: 2x36 C: [192757]
        automated match to d1xhkb_
      4. 1637396Domain d2x36d_: 2x36 D: [169837]
        automated match to d1rr9e_
      5. 1637397Domain d2x36e_: 2x36 E: [192759]
        automated match to d1xhkb_
      6. 1637398Domain d2x36f_: 2x36 F: [192756]
        automated match to d1xhkb_
    4. Domains for 3d4j:
      1. 1637399Domain d3d4ja1: 3d4j A:8-193 [208989]
        Other proteins in same PDB: d3d4ja2, d3d4jb2
        automated match to d1fi4a1
        complexed with so4
      2. 1637400Domain d3d4jb1: 3d4j B:9-193 [208991]
        Other proteins in same PDB: d3d4ja2, d3d4jb2
        automated match to d1fi4a1
        complexed with so4
  8. 1637405Methanothermobacter thermautotrophicus [TaxId:145262] [225885] (1 PDB entry)
  9. 1637412Mouse (Mus musculus) [TaxId:10090] [225562] (1 PDB entry)
  10. 1637415Mycobacterium tuberculosis [TaxId:1773] [224917] (1 PDB entry)
  11. 1637418Mycobacterium tuberculosis [TaxId:83332] [225380] (3 PDB entries)
    1. Domains for 3b4t:
      1. 1637419Domain d3b4ta1: 3b4t A:1-151 [208521]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
      2. 1637420Domain d3b4tb1: 3b4t B:2-151 [208523]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
      3. 1637421Domain d3b4tc1: 3b4t C:2-151 [208525]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
      4. 1637422Domain d3b4td1: 3b4t D:2-151 [208527]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
      5. 1637423Domain d3b4te1: 3b4t E:1-151 [208529]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
      6. 1637424Domain d3b4tf1: 3b4t F:1-151 [208531]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
    2. Domains for 4lom:
      1. 1637425Domain d4loma1: 4lom A:10-95 [224731]
        automated match to d2f1da1
        complexed with iyp, mn
      2. 1637426Domain d4loma2: 4lom A:96-200 [224732]
        automated match to d2f1da2
        complexed with iyp, mn
    3. Domains for 4lpf:
      1. 1637427Domain d4lpfa1: 4lpf A:10-95 [224743]
        automated match to d2f1da1
        complexed with 3tr, mn
      2. 1637428Domain d4lpfa2: 4lpf A:96-199 [224744]
        automated match to d2f1da2
        complexed with 3tr, mn
  12. 1637429Myxococcus xanthus [TaxId:246197] [225453] (1 PDB entry)
  13. 1637432Plasmodium falciparum [TaxId:36329] [188127] (1 PDB entry)
  14. 1637435Pyrococcus abyssi [TaxId:29292] [225427] (4 PDB entries)
    1. Domains for 2pnz:
      1. 1637438Domain d2pnza1: 2pnz A:9-153 [205559]
        Other proteins in same PDB: d2pnza2, d2pnzb2
        automated match to d2nn6b1
        complexed with 5gp, mpd, udp
      2. 1637439Domain d2pnzb1: 2pnz B:8-187 [238804]
        Other proteins in same PDB: d2pnza2, d2pnzb2
        automated match to d2wnra1
        complexed with 5gp, mpd, udp
    2. Domains for 2po0:
      1. 1637440Domain d2po0a1: 2po0 A:9-153 [205561]
        Other proteins in same PDB: d2po0a2, d2po0b2
        automated match to d2nn6b1
        complexed with adp, mpd
      2. 1637441Domain d2po0b1: 2po0 B:8-187 [238806]
        Other proteins in same PDB: d2po0a2, d2po0b2
        automated match to d2wnra1
        complexed with adp, mpd
    3. Domains for 2po1:
      1. 1637436Domain d2po1a1: 2po1 A:9-153 [205563]
        Other proteins in same PDB: d2po1a2, d2po1b2
        automated match to d2nn6b1
        protein/RNA complex; complexed with mpd
      2. 1637437Domain d2po1b1: 2po1 B:8-187 [238808]
        Other proteins in same PDB: d2po1a2, d2po1b2
        automated match to d2wnra1
        protein/RNA complex; complexed with mpd
    4. Domains for 2po2:
      1. 1637442Domain d2po2a1: 2po2 A:9-153 [205565]
        Other proteins in same PDB: d2po2a2, d2po2b2
        automated match to d2nn6b1
        complexed with cdp, mpd
      2. 1637443Domain d2po2b1: 2po2 B:8-187 [238810]
        Other proteins in same PDB: d2po2a2, d2po2b2
        automated match to d2wnra1
        complexed with cdp, mpd
  15. 1637444Pyrococcus horikoshii [TaxId:53953] [225134] (3 PDB entries)
    1. Domain for 2cz9:
    2. Domain for 2dei:
    3. Domain for 2dej:
  16. 1637448Xanthomonas oryzae [TaxId:291331] [226076] (2 PDB entries)
    1. Domain for 3lnu:
    2. Domain for 3lps:

More info for Protein automated matches from d.14.1.0: automated matches

Timeline for Protein automated matches from d.14.1.0: automated matches: