Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1401399Fold d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
    core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
  4. 1401400Superfamily d.14.1: Ribosomal protein S5 domain 2-like [54211] (13 families) (S)
  5. 1402062Family d.14.1.0: automated matches [191504] (1 protein)
    not a true family
  6. 1402063Protein automated matches [190826] (13 species)
    not a true protein

Species:

  1. 1402064Archaeoglobus fulgidus [TaxId:2234] [225000] (5 PDB entries)
    1. Domain for 1z0b:
    2. Domain for 1z0c:
    3. Domains for 1z0e:
      1. 1402068Domain d1z0ea_: 1z0e A: [203270]
        automated match to d1xhka_
      2. 1402069Domain d1z0eb_: 1z0e B: [203271]
        automated match to d1xhka_
      3. 1402070Domain d1z0ec_: 1z0e C: [203272]
        automated match to d1xhka_
      4. 1402071Domain d1z0ed_: 1z0e D: [203273]
        automated match to d1xhka_
      5. 1402072Domain d1z0ee_: 1z0e E: [203274]
        automated match to d1xhka_
      6. 1402073Domain d1z0ef_: 1z0e F: [203275]
        automated match to d1xhka_
    4. Domains for 1z0g:
      1. 1402074Domain d1z0ga_: 1z0g A: [203276]
        automated match to d1xhka_
      2. 1402075Domain d1z0gb_: 1z0g B: [203277]
        automated match to d1xhka_
      3. 1402076Domain d1z0gc_: 1z0g C: [203278]
        automated match to d1xhka_
      4. 1402077Domain d1z0gd_: 1z0g D: [203279]
        automated match to d1xhka_
      5. 1402078Domain d1z0ge_: 1z0g E: [203280]
        automated match to d1xhka_
      6. 1402079Domain d1z0gf_: 1z0g F: [203281]
        automated match to d1xhka_
    5. Domain for 1z0w:
  2. 1402080Bacillus subtilis [TaxId:1423] [236144] (1 PDB entry)
  3. 1402082Francisella tularensis [TaxId:376619] [226592] (4 PDB entries)
    1. Domain for 4hxz:
    2. Domain for 4hy1:
    3. Domain for 4hym:
    4. Domain for 4kqv:
  4. 1402087Human (Homo sapiens) [TaxId:9606] [189350] (4 PDB entries)
    1. Domains for 1zxm:
      1. 1402088Domain d1zxma2: 1zxm A:266-405 [203367]
        Other proteins in same PDB: d1zxma1, d1zxmb1
        automated match to d1pvgb1
        complexed with anp, mg
      2. 1402089Domain d1zxmb2: 1zxm B:266-411 [203369]
        Other proteins in same PDB: d1zxma1, d1zxmb1
        automated match to d1pvgb1
        complexed with anp, mg
    2. Domains for 1zxn:
      1. 1402098Domain d1zxna2: 1zxn A:266-422 [230472]
        Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1
        automated match to d1zxmb2
        complexed with adp, gol, mg, so4
      2. 1402099Domain d1zxnb2: 1zxn B:266-424 [230474]
        Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1
        automated match to d1zxmb2
        complexed with adp, gol, mg, so4
      3. 1402100Domain d1zxnc2: 1zxn C:266-426 [230476]
        Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1
        automated match to d1zxmb2
        complexed with adp, gol, mg, so4
      4. 1402101Domain d1zxnd2: 1zxn D:266-425 [230478]
        Other proteins in same PDB: d1zxna1, d1zxnb1, d1zxnc1, d1zxnd1
        automated match to d1zxmb2
        complexed with adp, gol, mg, so4
    3. Domains for 2x36:
      1. 1402090Domain d2x36a_: 2x36 A: [192755]
        automated match to d1xhkb_
      2. 1402091Domain d2x36b_: 2x36 B: [192758]
        automated match to d1xhkb_
      3. 1402092Domain d2x36c_: 2x36 C: [192757]
        automated match to d1xhkb_
      4. 1402093Domain d2x36d_: 2x36 D: [169837]
        automated match to d1rr9e_
      5. 1402094Domain d2x36e_: 2x36 E: [192759]
        automated match to d1xhkb_
      6. 1402095Domain d2x36f_: 2x36 F: [192756]
        automated match to d1xhkb_
    4. Domains for 3d4j:
      1. 1402096Domain d3d4ja1: 3d4j A:8-193 [208989]
        Other proteins in same PDB: d3d4ja2, d3d4jb2
        automated match to d1fi4a1
        complexed with so4
      2. 1402097Domain d3d4jb1: 3d4j B:9-193 [208991]
        Other proteins in same PDB: d3d4ja2, d3d4jb2
        automated match to d1fi4a1
        complexed with so4
  5. 1402102Methanothermobacter thermautotrophicus [TaxId:145262] [225885] (1 PDB entry)
  6. 1402109Mouse (Mus musculus) [TaxId:10090] [225562] (1 PDB entry)
  7. 1402112Mycobacterium tuberculosis [TaxId:1773] [224917] (1 PDB entry)
  8. 1402115Mycobacterium tuberculosis [TaxId:83332] [225380] (3 PDB entries)
    1. Domains for 3b4t:
      1. 1402116Domain d3b4ta1: 3b4t A:1-151 [208521]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
      2. 1402117Domain d3b4tb1: 3b4t B:2-151 [208523]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
      3. 1402118Domain d3b4tc1: 3b4t C:2-151 [208525]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
      4. 1402119Domain d3b4td1: 3b4t D:2-151 [208527]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
      5. 1402120Domain d3b4te1: 3b4t E:1-151 [208529]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
      6. 1402121Domain d3b4tf1: 3b4t F:1-151 [208531]
        Other proteins in same PDB: d3b4ta2, d3b4tb2, d3b4tc2, d3b4td2, d3b4te2, d3b4tf2
        automated match to d1r6la1
        complexed with po4
    2. Domains for 4lom:
      1. 1402122Domain d4loma1: 4lom A:10-95 [224731]
        automated match to d2f1da1
        complexed with iyp, mn
      2. 1402123Domain d4loma2: 4lom A:96-200 [224732]
        automated match to d2f1da2
        complexed with iyp, mn
    3. Domains for 4lpf:
      1. 1402124Domain d4lpfa1: 4lpf A:10-95 [224743]
        automated match to d2f1da1
        complexed with 3tr, mn
      2. 1402125Domain d4lpfa2: 4lpf A:96-199 [224744]
        automated match to d2f1da2
        complexed with 3tr, mn
  9. 1402126Myxococcus xanthus [TaxId:246197] [225453] (1 PDB entry)
  10. 1402129Plasmodium falciparum [TaxId:36329] [188127] (1 PDB entry)
  11. 1402132Pyrococcus abyssi [TaxId:29292] [225427] (4 PDB entries)
    1. Domain for 2pnz:
    2. Domain for 2po0:
    3. Domain for 2po1:
    4. Domain for 2po2:
  12. 1402137Pyrococcus horikoshii [TaxId:53953] [225134] (3 PDB entries)
    1. Domain for 2cz9:
    2. Domain for 2dei:
    3. Domain for 2dej:
  13. 1402141Xanthomonas oryzae [TaxId:291331] [226076] (2 PDB entries)
    1. Domain for 3lnu:
    2. Domain for 3lps:

More info for Protein automated matches from d.14.1.0: automated matches

Timeline for Protein automated matches from d.14.1.0: automated matches: