SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2221894Fold e.17: D-aminoacid aminotransferase-like PLP-dependent enzymes [56751] (1 superfamily)
    2 domains: (1) alpha+beta: beta3-alpha2-beta2; (2) alpha/beta, a part of its mixed sheet forms barrel: n=6, S=8
  4. 2221895Superfamily e.17.1: D-aminoacid aminotransferase-like PLP-dependent enzymes [56752] (2 families) (S)
  5. 2221992Family e.17.1.0: automated matches [191499] (1 protein)
    not a true family
  6. 2221993Protein automated matches [190815] (13 species)
    not a true protein

Species:

  1. 2221994Burkholderia pseudomallei [TaxId:28450] [226245] (1 PDB entry)
  2. 2222001Burkholderia pseudomallei [TaxId:557724] [260287] (1 PDB entry)
  3. 2222008Deinococcus radiodurans [TaxId:1299] [267897] (3 PDB entries)
    1. Domains for 3uyy:
      1. 2222011Domain d3uyya_: 3uyy A: [265544]
        automated match to d4dqna_
        complexed with plp
      2. 2222012Domain d3uyyb_: 3uyy B: [265545]
        automated match to d4dqna_
        complexed with plp
    2. Domains for 3uzb:
      1. 2222013Domain d3uzba_: 3uzb A: [265546]
        automated match to d4dqna_
        complexed with coi, plp
      2. 2222014Domain d3uzbb_: 3uzb B: [265547]
        automated match to d4dqna_
        complexed with coi, plp
      3. 2222015Domain d3uzbc_: 3uzb C: [265548]
        automated match to d4dqna_
        complexed with coi, plp
      4. 2222016Domain d3uzbd_: 3uzb D: [265549]
        automated match to d4dqna_
        complexed with coi, plp
    3. Domains for 3uzo:
      1. 2222009Domain d3uzoa_: 3uzo A: [265550]
        automated match to d4dqna_
        complexed with glu, plp
      2. 2222010Domain d3uzob_: 3uzo B: [265551]
        automated match to d4dqna_
        complexed with glu, plp
  4. 2222017Mycobacterium smegmatis [TaxId:1772] [232037] (3 PDB entries)
    1. Domain for 3dtg:
    2. Domains for 3dth:
      1. 2222018Domain d3dtha_: 3dth A: [305238]
        automated match to d3jz6a_
        complexed with gol, mes, obz, plp
      2. 2222019Domain d3dthb_: 3dth B: [305239]
        automated match to d3jz6a_
        complexed with gol, mes, obz, plp
    3. Domains for 3jz6:
      1. 2222020Domain d3jz6a_: 3jz6 A: [247072]
        automated match to d3dtga_
        complexed with gol, plp
      2. 2222021Domain d3jz6b_: 3jz6 B: [247073]
        automated match to d3dtga_
        complexed with gol, plp
  5. 2222023Mycobacterium smegmatis [TaxId:246196] [232034] (2 PDB entries)
    1. Domains for 3dtf:
      1. 2222025Domain d3dtfa_: 3dtf A: [232035]
        automated match to d2coib_
        complexed with gol, so4
      2. 2222026Domain d3dtfb_: 3dtf B: [232036]
        automated match to d2coib_
        complexed with gol, so4
    2. Domain for 3dtg:
  6. 2222027Mycobacterium tuberculosis [TaxId:1773] [232507] (1 PDB entry)
  7. 2222029Streptococcus mutans [TaxId:1309] [256238] (1 PDB entry)
  8. 2222031Thermotoga maritima [TaxId:243274] [188420] (1 PDB entry)
  9. 2222036Thermus thermophilus HB8 [TaxId:300852] [188374] (4 PDB entries)
    1. Domains for 2eiy:
      1. 2222037Domain d2eiya_: 2eiy A: [164071]
        automated match to d1a3ga_
        complexed with 4mv, mpd, plp
      2. 2222038Domain d2eiyb_: 2eiy B: [164072]
        automated match to d1a3ga_
        complexed with 4mv, mpd, plp
      3. 2222039Domain d2eiyc_: 2eiy C: [164073]
        automated match to d1a3ga_
        complexed with 4mv, mpd, plp
    2. Domains for 2ej0:
      1. 2222040Domain d2ej0a_: 2ej0 A: [164074]
        automated match to d1a3ga_
        complexed with mpd, pmp
      2. 2222041Domain d2ej0b_: 2ej0 B: [164075]
        automated match to d1a3ga_
        complexed with mpd, pmp
      3. 2222042Domain d2ej0c_: 2ej0 C: [164076]
        automated match to d1a3ga_
        complexed with mpd, pmp
      4. 2222043Domain d2ej0d_: 2ej0 D: [164077]
        automated match to d1a3ga_
        complexed with mpd, pmp
      5. 2222044Domain d2ej0e_: 2ej0 E: [164078]
        automated match to d1a3ga_
        complexed with mpd, pmp
      6. 2222045Domain d2ej0f_: 2ej0 F: [164079]
        automated match to d1a3ga_
        complexed with mpd, pmp
    3. Domains for 2ej2:
      1. 2222046Domain d2ej2a_: 2ej2 A: [164080]
        automated match to d1a3ga_
        complexed with mpd, ppe
      2. 2222047Domain d2ej2b_: 2ej2 B: [164081]
        automated match to d1a3ga_
        complexed with mpd, ppe
      3. 2222048Domain d2ej2c_: 2ej2 C: [164082]
        automated match to d1a3ga_
        complexed with mpd, ppe
      4. 2222049Domain d2ej2d_: 2ej2 D: [164083]
        automated match to d1a3ga_
        complexed with mpd, ppe
      5. 2222050Domain d2ej2e_: 2ej2 E: [164084]
        automated match to d1a3ga_
        complexed with mpd, ppe
      6. 2222051Domain d2ej2f_: 2ej2 F: [164085]
        automated match to d1a3ga_
        complexed with mpd, ppe
    4. Domains for 2ej3:
      1. 2222052Domain d2ej3a_: 2ej3 A: [164086]
        automated match to d1a3ga_
        complexed with gbn, mpd, plp
      2. 2222053Domain d2ej3b_: 2ej3 B: [164087]
        automated match to d1a3ga_
        complexed with gbn, mpd, plp
      3. 2222054Domain d2ej3c_: 2ej3 C: [164088]
        automated match to d1a3ga_
        complexed with gbn, mpd, plp
  10. 2222055Thermus thermophilus [TaxId:274] [188090] (1 PDB entry)
  11. 2269545Thermoproteus uzoniensis [TaxId:999630] [312849] (1 PDB entry)
  12. 2279174Geoglobus acetivorans [TaxId:565033] [322475] (2 PDB entries)
    1. Domains for 5cm0:
      1. 2279175Domain d5cm0b_: 5cm0 B: [322476]
        automated match to d2eiya_
        complexed with gol, plp
      2. 2279230Domain d5cm0c_: 5cm0 C: [322531]
        automated match to d2eiya_
        complexed with gol, plp
      3. 2279234Domain d5cm0a_: 5cm0 A: [322535]
        automated match to d2eiya_
        complexed with gol, plp
    2. Domains for 5e25:
      1. 2280254Domain d5e25c_: 5e25 C: [323555]
        automated match to d2eiya_
        complexed with akg, plp
      2. 2280255Domain d5e25b_: 5e25 B: [323556]
        automated match to d2eiya_
        complexed with akg, plp
      3. 2280298Domain d5e25a_: 5e25 A: [323599]
        automated match to d2eiya_
        complexed with akg, plp
  13. 2288834Mycobacterium tuberculosis [TaxId:83332] [332135] (1 PDB entry)

More info for Protein automated matches from e.17.1.0: automated matches

Timeline for Protein automated matches from e.17.1.0: automated matches: