Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2568173Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
  3. 2573070Fold e.17: D-aminoacid aminotransferase-like PLP-dependent enzymes [56751] (1 superfamily)
    2 domains: (1) alpha+beta: beta3-alpha2-beta2; (2) alpha/beta, a part of its mixed sheet forms barrel: n=6, S=8
  4. 2573071Superfamily e.17.1: D-aminoacid aminotransferase-like PLP-dependent enzymes [56752] (2 families) (S)
  5. 2573190Family e.17.1.0: automated matches [191499] (1 protein)
    not a true family
  6. 2573191Protein automated matches [190815] (18 species)
    not a true protein

Species:

  1. 2573192Burkholderia cenocepacia [TaxId:216591] [346410] (1 PDB entry)
  2. 2573195Burkholderia pseudomallei [TaxId:28450] [226245] (1 PDB entry)
  3. 2573202Burkholderia pseudomallei [TaxId:557724] [260287] (1 PDB entry)
  4. 2573209Burkholderia thailandensis [TaxId:271848] [346411] (2 PDB entries)
    1. Domains for 4m0j:
      1. 2573210Domain d4m0ja_: 4m0j A: [345338]
        automated match to d5cm0b_
        complexed with ca
      2. 2573211Domain d4m0jb_: 4m0j B: [345339]
        automated match to d5cm0b_
        complexed with ca
    2. Domain for 4tm5:
  5. 2573213Deinococcus radiodurans [TaxId:1299] [267897] (3 PDB entries)
    1. Domains for 3uyy:
      1. 2573216Domain d3uyya_: 3uyy A: [265544]
        automated match to d4dqna_
        complexed with plp
      2. 2573217Domain d3uyyb_: 3uyy B: [265545]
        automated match to d4dqna_
        complexed with plp
    2. Domains for 3uzb:
      1. 2573218Domain d3uzba_: 3uzb A: [265546]
        automated match to d4dqna_
        complexed with coi, plp
      2. 2573219Domain d3uzbb_: 3uzb B: [265547]
        automated match to d4dqna_
        complexed with coi, plp
      3. 2573220Domain d3uzbc_: 3uzb C: [265548]
        automated match to d4dqna_
        complexed with coi, plp
      4. 2573221Domain d3uzbd_: 3uzb D: [265549]
        automated match to d4dqna_
        complexed with coi, plp
    3. Domains for 3uzo:
      1. 2573214Domain d3uzoa_: 3uzo A: [265550]
        automated match to d4dqna_
        complexed with glu, plp
      2. 2573215Domain d3uzob_: 3uzo B: [265551]
        automated match to d4dqna_
        complexed with glu, plp
  6. 2573222Geoglobus acetivorans [TaxId:565033] [322475] (2 PDB entries)
    1. Domains for 5cm0:
      1. 2573223Domain d5cm0a_: 5cm0 A: [322535]
        automated match to d2eiya_
        complexed with gol, plp
      2. 2573224Domain d5cm0b_: 5cm0 B: [322476]
        automated match to d2eiya_
        complexed with gol, plp
      3. 2573225Domain d5cm0c_: 5cm0 C: [322531]
        automated match to d2eiya_
        complexed with gol, plp
    2. Domains for 5e25:
      1. 2573226Domain d5e25a_: 5e25 A: [323599]
        automated match to d2eiya_
        complexed with akg, plp
      2. 2573227Domain d5e25b_: 5e25 B: [323556]
        automated match to d2eiya_
        complexed with akg, plp
      3. 2573228Domain d5e25c_: 5e25 C: [323555]
        automated match to d2eiya_
        complexed with akg, plp
  7. 2573229Mycobacterium smegmatis [TaxId:1772] [232037] (3 PDB entries)
    1. Domain for 3dtg:
    2. Domains for 3dth:
      1. 2573230Domain d3dtha_: 3dth A: [305238]
        automated match to d3jz6a_
        complexed with gol, mes, obz, plp
      2. 2573231Domain d3dthb_: 3dth B: [305239]
        automated match to d3jz6a_
        complexed with gol, mes, obz, plp
    3. Domains for 3jz6:
      1. 2573232Domain d3jz6a_: 3jz6 A: [247072]
        automated match to d3dtga_
        complexed with gol, plp
      2. 2573233Domain d3jz6b_: 3jz6 B: [247073]
        automated match to d3dtga_
        complexed with gol, plp
  8. 2573235Mycobacterium smegmatis [TaxId:246196] [232034] (2 PDB entries)
    1. Domains for 3dtf:
      1. 2573237Domain d3dtfa_: 3dtf A: [232035]
        automated match to d2coib_
        complexed with gol, so4
      2. 2573238Domain d3dtfb_: 3dtf B: [232036]
        automated match to d2coib_
        complexed with gol, so4
    2. Domain for 3dtg:
  9. 2573239Mycobacterium tuberculosis [TaxId:1773] [232507] (1 PDB entry)
  10. 2573241Mycobacterium tuberculosis [TaxId:83332] [332135] (1 PDB entry)
  11. 2573244Sinorhizobium meliloti [TaxId:266834] [346412] (1 PDB entry)
  12. 2573247Streptococcus mutans [TaxId:1309] [256238] (1 PDB entry)
  13. 2573249Thermoproteus uzoniensis [TaxId:999630] [312849] (1 PDB entry)
  14. 2573253Thermotoga maritima [TaxId:243274] [188420] (1 PDB entry)
  15. 2573258Thermus thermophilus HB8 [TaxId:300852] [188374] (4 PDB entries)
    1. Domains for 2eiy:
      1. 2573265Domain d2eiya_: 2eiy A: [164071]
        automated match to d1a3ga_
        complexed with 4mv, mpd, plp
      2. 2573266Domain d2eiyb_: 2eiy B: [164072]
        automated match to d1a3ga_
        complexed with 4mv, mpd, plp
      3. 2573267Domain d2eiyc_: 2eiy C: [164073]
        automated match to d1a3ga_
        complexed with 4mv, mpd, plp
    2. Domains for 2ej0:
      1. 2573259Domain d2ej0a_: 2ej0 A: [164074]
        automated match to d1a3ga_
        complexed with mpd, pmp
      2. 2573260Domain d2ej0b_: 2ej0 B: [164075]
        automated match to d1a3ga_
        complexed with mpd, pmp
      3. 2573261Domain d2ej0c_: 2ej0 C: [164076]
        automated match to d1a3ga_
        complexed with mpd, pmp
      4. 2573262Domain d2ej0d_: 2ej0 D: [164077]
        automated match to d1a3ga_
        complexed with mpd, pmp
      5. 2573263Domain d2ej0e_: 2ej0 E: [164078]
        automated match to d1a3ga_
        complexed with mpd, pmp
      6. 2573264Domain d2ej0f_: 2ej0 F: [164079]
        automated match to d1a3ga_
        complexed with mpd, pmp
    3. Domains for 2ej2:
      1. 2573268Domain d2ej2a_: 2ej2 A: [164080]
        automated match to d1a3ga_
        complexed with mpd, ppe
      2. 2573269Domain d2ej2b_: 2ej2 B: [164081]
        automated match to d1a3ga_
        complexed with mpd, ppe
      3. 2573270Domain d2ej2c_: 2ej2 C: [164082]
        automated match to d1a3ga_
        complexed with mpd, ppe
      4. 2573271Domain d2ej2d_: 2ej2 D: [164083]
        automated match to d1a3ga_
        complexed with mpd, ppe
      5. 2573272Domain d2ej2e_: 2ej2 E: [164084]
        automated match to d1a3ga_
        complexed with mpd, ppe
      6. 2573273Domain d2ej2f_: 2ej2 F: [164085]
        automated match to d1a3ga_
        complexed with mpd, ppe
    4. Domains for 2ej3:
      1. 2573274Domain d2ej3a_: 2ej3 A: [164086]
        automated match to d1a3ga_
        complexed with gbn, mpd, plp
      2. 2573275Domain d2ej3b_: 2ej3 B: [164087]
        automated match to d1a3ga_
        complexed with gbn, mpd, plp
      3. 2573276Domain d2ej3c_: 2ej3 C: [164088]
        automated match to d1a3ga_
        complexed with gbn, mpd, plp
  16. 2573277Thermus thermophilus [TaxId:274] [188090] (1 PDB entry)
  17. 3046480Archaeoglobus fulgidus [TaxId:224325] [346542] (2 PDB entries)
    1. Domains for 5mqz:
      1. 3046504Domain d5mqza_: 5mqz A: [346566]
        automated match to d5cm0b_
        complexed with cl, edo, peg, tam
      2. 3046641Domain d5mqzb_: 5mqz B: [346703]
        automated match to d5cm0b_
        complexed with cl, edo, peg, tam
      3. 3046680Domain d5mqzd_: 5mqz D: [346742]
        automated match to d5cm0b_
        complexed with cl, edo, peg, tam
      4. 3046723Domain d5mqze_: 5mqz E: [346785]
        automated match to d5cm0b_
        complexed with cl, edo, peg, tam
      5. 3046744Domain d5mqzc_: 5mqz C: [346806]
        automated match to d5cm0b_
        complexed with cl, edo, peg, tam
      6. 3046771Domain d5mqzf_: 5mqz F: [346833]
        automated match to d5cm0b_
        complexed with cl, edo, peg, tam
    2. Domains for 5mr0:
      1. 3046481Domain d5mr0c_: 5mr0 C: [346543]
        automated match to d5cm0b_
        complexed with cl, edo, peg, pxg, tam
      2. 3046521Domain d5mr0f_: 5mr0 F: [346583]
        automated match to d5cm0b_
        complexed with cl, edo, peg, pxg, tam
      3. 3046535Domain d5mr0a_: 5mr0 A: [346597]
        automated match to d5cm0b_
        complexed with cl, edo, peg, pxg, tam
      4. 3046583Domain d5mr0b_: 5mr0 B: [346645]
        automated match to d5cm0b_
        complexed with cl, edo, peg, pxg, tam
      5. 3046627Domain d5mr0e_: 5mr0 E: [346689]
        automated match to d5cm0b_
        complexed with cl, edo, peg, pxg, tam
      6. 3046768Domain d5mr0d_: 5mr0 D: [346830]
        automated match to d5cm0b_
        complexed with cl, edo, peg, pxg, tam
  18. 3057948Thermobaculum terrenum [TaxId:525904] [358010] (2 PDB entries)
    1. Domain for 6gkp:
    2. Domains for 6gkr:
      1. 3057956Domain d6gkra_: 6gkr A: [358018]
        automated match to d3u0ga_
        complexed with act, cl, plp
      2. 3057964Domain d6gkrb_: 6gkr B: [358026]
        automated match to d3u0ga_
        complexed with act, cl, plp
      3. 3057969Domain d6gkrc_: 6gkr C: [358031]
        automated match to d3u0ga_
        complexed with act, cl, plp

More info for Protein automated matches from e.17.1.0: automated matches

Timeline for Protein automated matches from e.17.1.0: automated matches: