Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2221894Fold e.17: D-aminoacid aminotransferase-like PLP-dependent enzymes [56751] (1 superfamily)
    2 domains: (1) alpha+beta: beta3-alpha2-beta2; (2) alpha/beta, a part of its mixed sheet forms barrel: n=6, S=8
  4. 2221895Superfamily e.17.1: D-aminoacid aminotransferase-like PLP-dependent enzymes [56752] (2 families) (S)
  5. 2221992Family e.17.1.0: automated matches [191499] (1 protein)
    not a true family
  6. 2221993Protein automated matches [190815] (13 species)
    not a true protein

Species:

  1. 2221994Burkholderia pseudomallei [TaxId:28450] [226245] (1 PDB entry)
  2. 2222001Burkholderia pseudomallei [TaxId:557724] [260287] (1 PDB entry)
  3. 2222008Deinococcus radiodurans [TaxId:1299] [267897] (3 PDB entries)
    1. Domains for 3uyy:
      1. 2222011Domain d3uyya_: 3uyy A: [265544]
        automated match to d4dqna_
        complexed with plp
      2. 2222012Domain d3uyyb_: 3uyy B: [265545]
        automated match to d4dqna_
        complexed with plp
    2. Domains for 3uzb:
      1. 2222013Domain d3uzba_: 3uzb A: [265546]
        automated match to d4dqna_
        complexed with coi, plp
      2. 2222014Domain d3uzbb_: 3uzb B: [265547]
        automated match to d4dqna_
        complexed with coi, plp
      3. 2222015Domain d3uzbc_: 3uzb C: [265548]
        automated match to d4dqna_
        complexed with coi, plp
      4. 2222016Domain d3uzbd_: 3uzb D: [265549]
        automated match to d4dqna_
        complexed with coi, plp
    3. Domains for 3uzo:
      1. 2222009Domain d3uzoa_: 3uzo A: [265550]
        automated match to d4dqna_
        complexed with glu, plp
      2. 2222010Domain d3uzob_: 3uzo B: [265551]
        automated match to d4dqna_
        complexed with glu, plp
  4. 2222017Mycobacterium smegmatis [TaxId:1772] [232037] (3 PDB entries)
    1. Domain for 3dtg:
    2. Domains for 3dth:
      1. 2222018Domain d3dtha_: 3dth A: [305238]
        automated match to d3jz6a_
        complexed with gol, mes, obz, plp
      2. 2222019Domain d3dthb_: 3dth B: [305239]
        automated match to d3jz6a_
        complexed with gol, mes, obz, plp
    3. Domains for 3jz6:
      1. 2222020Domain d3jz6a_: 3jz6 A: [247072]
        automated match to d3dtga_
        complexed with gol, plp
      2. 2222021Domain d3jz6b_: 3jz6 B: [247073]
        automated match to d3dtga_
        complexed with gol, plp
  5. 2222023Mycobacterium smegmatis [TaxId:246196] [232034] (2 PDB entries)
    1. Domains for 3dtf:
      1. 2222025Domain d3dtfa_: 3dtf A: [232035]
        automated match to d2coib_
        complexed with gol, so4
      2. 2222026Domain d3dtfb_: 3dtf B: [232036]
        automated match to d2coib_
        complexed with gol, so4
    2. Domain for 3dtg:
  6. 2222027Mycobacterium tuberculosis [TaxId:1773] [232507] (1 PDB entry)
  7. 2222029Streptococcus mutans [TaxId:1309] [256238] (1 PDB entry)
  8. 2222031Thermotoga maritima [TaxId:243274] [188420] (1 PDB entry)
  9. 2222036Thermus thermophilus HB8 [TaxId:300852] [188374] (4 PDB entries)
    1. Domains for 2eiy:
      1. 2222037Domain d2eiya_: 2eiy A: [164071]
        automated match to d1a3ga_
        complexed with 4mv, mpd, plp
      2. 2222038Domain d2eiyb_: 2eiy B: [164072]
        automated match to d1a3ga_
        complexed with 4mv, mpd, plp
      3. 2222039Domain d2eiyc_: 2eiy C: [164073]
        automated match to d1a3ga_
        complexed with 4mv, mpd, plp
    2. Domains for 2ej0:
      1. 2222040Domain d2ej0a_: 2ej0 A: [164074]
        automated match to d1a3ga_
        complexed with mpd, pmp
      2. 2222041Domain d2ej0b_: 2ej0 B: [164075]
        automated match to d1a3ga_
        complexed with mpd, pmp
      3. 2222042Domain d2ej0c_: 2ej0 C: [164076]
        automated match to d1a3ga_
        complexed with mpd, pmp
      4. 2222043Domain d2ej0d_: 2ej0 D: [164077]
        automated match to d1a3ga_
        complexed with mpd, pmp
      5. 2222044Domain d2ej0e_: 2ej0 E: [164078]
        automated match to d1a3ga_
        complexed with mpd, pmp
      6. 2222045Domain d2ej0f_: 2ej0 F: [164079]
        automated match to d1a3ga_
        complexed with mpd, pmp
    3. Domains for 2ej2:
      1. 2222046Domain d2ej2a_: 2ej2 A: [164080]
        automated match to d1a3ga_
        complexed with mpd, ppe
      2. 2222047Domain d2ej2b_: 2ej2 B: [164081]
        automated match to d1a3ga_
        complexed with mpd, ppe
      3. 2222048Domain d2ej2c_: 2ej2 C: [164082]
        automated match to d1a3ga_
        complexed with mpd, ppe
      4. 2222049Domain d2ej2d_: 2ej2 D: [164083]
        automated match to d1a3ga_
        complexed with mpd, ppe
      5. 2222050Domain d2ej2e_: 2ej2 E: [164084]
        automated match to d1a3ga_
        complexed with mpd, ppe
      6. 2222051Domain d2ej2f_: 2ej2 F: [164085]
        automated match to d1a3ga_
        complexed with mpd, ppe
    4. Domains for 2ej3:
      1. 2222052Domain d2ej3a_: 2ej3 A: [164086]
        automated match to d1a3ga_
        complexed with gbn, mpd, plp
      2. 2222053Domain d2ej3b_: 2ej3 B: [164087]
        automated match to d1a3ga_
        complexed with gbn, mpd, plp
      3. 2222054Domain d2ej3c_: 2ej3 C: [164088]
        automated match to d1a3ga_
        complexed with gbn, mpd, plp
  10. 2222055Thermus thermophilus [TaxId:274] [188090] (1 PDB entry)
  11. 2269545Thermoproteus uzoniensis [TaxId:999630] [312849] (1 PDB entry)
  12. 2279174Geoglobus acetivorans [TaxId:565033] [322475] (2 PDB entries)
    1. Domains for 5cm0:
      1. 2279175Domain d5cm0b_: 5cm0 B: [322476]
        automated match to d2eiya_
        complexed with gol, plp
      2. 2279230Domain d5cm0c_: 5cm0 C: [322531]
        automated match to d2eiya_
        complexed with gol, plp
      3. 2279234Domain d5cm0a_: 5cm0 A: [322535]
        automated match to d2eiya_
        complexed with gol, plp
    2. Domains for 5e25:
      1. 2280254Domain d5e25c_: 5e25 C: [323555]
        automated match to d2eiya_
        complexed with akg, plp
      2. 2280255Domain d5e25b_: 5e25 B: [323556]
        automated match to d2eiya_
        complexed with akg, plp
      3. 2280298Domain d5e25a_: 5e25 A: [323599]
        automated match to d2eiya_
        complexed with akg, plp
  13. 2288834Mycobacterium tuberculosis [TaxId:83332] [332135] (1 PDB entry)

More info for Protein automated matches from e.17.1.0: automated matches

Timeline for Protein automated matches from e.17.1.0: automated matches: