SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2178385Fold d.61: LigT-like [55143] (1 superfamily)
    duplication of beta-alpha-beta-alpha-beta motif: antiparallel beta sheet forms barrel (n=6, S=8) similar to the barrel of prokaryotic DNA topoisomerases I and III
  4. 2178386Superfamily d.61.1: LigT-like [55144] (5 families) (S)
  5. 2178448Family d.61.1.0: automated matches [191492] (1 protein)
    not a true family
  6. 2178449Protein automated matches [190796] (5 species)
    not a true protein

Species:

  1. 2178450Carassius auratus [TaxId:7957] [255230] (1 PDB entry)
  2. 2178452Escherichia coli [TaxId:83333] [260567] (1 PDB entry)
  3. 2178455Pyrococcus furiosus [TaxId:186497] [255177] (1 PDB entry)
  4. 2178457Pyrococcus horikoshii [TaxId:53953] [188054] (2 PDB entries)
    1. Domain for 1vdx:
    2. Domain for 1vgj:
  5. 2285265Escherichia coli [TaxId:469008] [328566] (7 PDB entries)
    1. Domains for 5ldi:
      1. 2285269Domain d5ldid_: 5ldi D: [328570]
        automated match to d4qakb_
        complexed with cl
      2. 2285270Domain d5ldia_: 5ldi A: [328571]
        automated match to d4qakb_
        complexed with cl
      3. 2285290Domain d5ldic_: 5ldi C: [328591]
        automated match to d4qakb_
        complexed with cl
      4. 2285389Domain d5ldib_: 5ldi B: [328690]
        automated match to d4qakb_
        complexed with cl
    2. Domains for 5ldj:
      1. 2285276Domain d5ldjd_: 5ldj D: [328577]
        automated match to d4qakb_
        complexed with po4
      2. 2285283Domain d5ldja_: 5ldj A: [328584]
        automated match to d4qakb_
        complexed with po4
      3. 2285297Domain d5ldjb_: 5ldj B: [328598]
        automated match to d4qakb_
        complexed with po4
      4. 2285320Domain d5ldjc_: 5ldj C: [328621]
        automated match to d4qakb_
        complexed with po4
    3. Domains for 5ldk:
      1. 2285310Domain d5ldka_: 5ldk A: [328611]
        automated match to d4qakb_
        complexed with atp
      2. 2285439Domain d5ldkb_: 5ldk B: [328740]
        automated match to d4qakb_
        complexed with atp
    4. Domains for 5ldm:
      1. 2285325Domain d5ldma_: 5ldm A: [328626]
        automated match to d4qakb_
        complexed with 2am, cl
      2. 2285339Domain d5ldmb_: 5ldm B: [328640]
        automated match to d4qakb_
        complexed with 2am, cl
    5. Domains for 5ldo:
      1. 2285266Domain d5ldod_: 5ldo D: [328567]
        automated match to d4qakb_
        complexed with 3am
      2. 2285324Domain d5ldob_: 5ldo B: [328625]
        automated match to d4qakb_
        complexed with 3am
      3. 2285329Domain d5ldoa_: 5ldo A: [328630]
        automated match to d4qakb_
        complexed with 3am
      4. 2285382Domain d5ldoc_: 5ldo C: [328683]
        automated match to d4qakb_
        complexed with 3am
    6. Domains for 5ldp:
      1. 2285282Domain d5ldpb_: 5ldp B: [328583]
        automated match to d4qakb_
        complexed with atp, cl, mg
      2. 2285305Domain d5ldpa_: 5ldp A: [328606]
        automated match to d4qakb_
        complexed with atp, cl, mg
    7. Domains for 5ldq:
      1. 2285268Domain d5ldqa_: 5ldq A: [328569]
        automated match to d4qakb_
        complexed with 1pe, cl, nap, po4
      2. 2285273Domain d5ldqd_: 5ldq D: [328574]
        automated match to d4qakb_
        complexed with 1pe, cl, nap, po4
      3. 2285274Domain d5ldqb_: 5ldq B: [328575]
        automated match to d4qakb_
        complexed with 1pe, cl, nap, po4
      4. 2285281Domain d5ldqc_: 5ldq C: [328582]
        automated match to d4qakb_
        complexed with 1pe, cl, nap, po4

More info for Protein automated matches from d.61.1.0: automated matches

Timeline for Protein automated matches from d.61.1.0: automated matches: