Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2178385Fold d.61: LigT-like [55143] (1 superfamily)
    duplication of beta-alpha-beta-alpha-beta motif: antiparallel beta sheet forms barrel (n=6, S=8) similar to the barrel of prokaryotic DNA topoisomerases I and III
  4. 2178386Superfamily d.61.1: LigT-like [55144] (5 families) (S)
  5. 2178448Family d.61.1.0: automated matches [191492] (1 protein)
    not a true family
  6. 2178449Protein automated matches [190796] (6 species)
    not a true protein

Species:

  1. 2178450Carassius auratus [TaxId:7957] [255230] (1 PDB entry)
  2. 2178452Escherichia coli [TaxId:83333] [260567] (1 PDB entry)
  3. 2178455Pyrococcus furiosus [TaxId:186497] [255177] (1 PDB entry)
  4. 2178457Pyrococcus horikoshii [TaxId:53953] [188054] (2 PDB entries)
    1. Domain for 1vdx:
    2. Domain for 1vgj:
  5. 2285265Escherichia coli [TaxId:469008] [328566] (7 PDB entries)
    1. Domains for 5ldi:
      1. 2285269Domain d5ldid_: 5ldi D: [328570]
        automated match to d4qakb_
        complexed with cl
      2. 2285270Domain d5ldia_: 5ldi A: [328571]
        automated match to d4qakb_
        complexed with cl
      3. 2285290Domain d5ldic_: 5ldi C: [328591]
        automated match to d4qakb_
        complexed with cl
      4. 2285389Domain d5ldib_: 5ldi B: [328690]
        automated match to d4qakb_
        complexed with cl
    2. Domains for 5ldj:
      1. 2285276Domain d5ldjd_: 5ldj D: [328577]
        automated match to d4qakb_
        complexed with po4
      2. 2285283Domain d5ldja_: 5ldj A: [328584]
        automated match to d4qakb_
        complexed with po4
      3. 2285297Domain d5ldjb_: 5ldj B: [328598]
        automated match to d4qakb_
        complexed with po4
      4. 2285320Domain d5ldjc_: 5ldj C: [328621]
        automated match to d4qakb_
        complexed with po4
    3. Domains for 5ldk:
      1. 2285310Domain d5ldka_: 5ldk A: [328611]
        automated match to d4qakb_
        complexed with atp
      2. 2285439Domain d5ldkb_: 5ldk B: [328740]
        automated match to d4qakb_
        complexed with atp
    4. Domains for 5ldm:
      1. 2285325Domain d5ldma_: 5ldm A: [328626]
        automated match to d4qakb_
        complexed with 2am, cl
      2. 2285339Domain d5ldmb_: 5ldm B: [328640]
        automated match to d4qakb_
        complexed with 2am, cl
    5. Domains for 5ldo:
      1. 2285266Domain d5ldod_: 5ldo D: [328567]
        automated match to d4qakb_
        complexed with 3am
      2. 2285324Domain d5ldob_: 5ldo B: [328625]
        automated match to d4qakb_
        complexed with 3am
      3. 2285329Domain d5ldoa_: 5ldo A: [328630]
        automated match to d4qakb_
        complexed with 3am
      4. 2285382Domain d5ldoc_: 5ldo C: [328683]
        automated match to d4qakb_
        complexed with 3am
    6. Domains for 5ldp:
      1. 2285282Domain d5ldpb_: 5ldp B: [328583]
        automated match to d4qakb_
        complexed with atp, cl, mg
      2. 2285305Domain d5ldpa_: 5ldp A: [328606]
        automated match to d4qakb_
        complexed with atp, cl, mg
    7. Domains for 5ldq:
      1. 2285268Domain d5ldqa_: 5ldq A: [328569]
        automated match to d4qakb_
        complexed with 1pe, cl, nap, po4
      2. 2285273Domain d5ldqd_: 5ldq D: [328574]
        automated match to d4qakb_
        complexed with 1pe, cl, nap, po4
      3. 2285274Domain d5ldqb_: 5ldq B: [328575]
        automated match to d4qakb_
        complexed with 1pe, cl, nap, po4
      4. 2285281Domain d5ldqc_: 5ldq C: [328582]
        automated match to d4qakb_
        complexed with 1pe, cl, nap, po4
  6. 2296195Deinococcus radiodurans [TaxId:1299] [339496] (2 PDB entries)
    1. Domain for 5h7e:
    2. Domain for 5h7f:

More info for Protein automated matches from d.61.1.0: automated matches

Timeline for Protein automated matches from d.61.1.0: automated matches: