SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2080913Superfamily c.1.7: NAD(P)-linked oxidoreductase [51430] (2 families) (S)
  5. 2081379Family c.1.7.0: automated matches [191491] (1 protein)
    not a true family
  6. 2081380Protein automated matches [190793] (26 species)
    not a true protein

Species:

  1. 2081381Bacillus halodurans [TaxId:272558] [225042] (2 PDB entries)
    1. Domains for 1ynp:
      1. 2081382Domain d1ynpa1: 1ynp A:1-297 [203208]
        Other proteins in same PDB: d1ynpa2, d1ynpb2
        automated match to d4asth_
        complexed with gol, na, so4, suc
      2. 2081383Domain d1ynpb1: 1ynp B:1-297 [203209]
        Other proteins in same PDB: d1ynpa2, d1ynpb2
        automated match to d4asth_
        complexed with gol, na, so4, suc
    2. Domains for 1ynq:
      1. 2081384Domain d1ynqa1: 1ynq A:1-297 [203210]
        Other proteins in same PDB: d1ynqa2, d1ynqb2
        automated match to d4asth_
        complexed with gol, na, ndp, so4, suc
      2. 2081385Domain d1ynqb1: 1ynq B:1-297 [203211]
        Other proteins in same PDB: d1ynqa2, d1ynqb2
        automated match to d4asth_
        complexed with gol, na, ndp, so4, suc
  2. 2081386Bacillus subtilis [TaxId:1423] [196103] (4 PDB entries)
    1. Domains for 3b3d:
      1. 2081391Domain d3b3da_: 3b3d A: [208514]
        automated match to d3guga_
        complexed with ca
      2. 2081392Domain d3b3db_: 3b3d B: [231826]
        automated match to d3b3da_
        complexed with ca
      3. 2081393Domain d3b3dc_: 3b3d C: [208515]
        automated match to d3guga_
        complexed with ca
    2. Domains for 3b3e:
      1. 2081387Domain d3b3ea_: 3b3e A: [305054]
        automated match to d3f7ja_
        complexed with no3
      2. 2081388Domain d3b3eb_: 3b3e B: [305055]
        automated match to d3f7ja_
        complexed with no3
    3. Domains for 3d3f:
      1. 2081394Domain d3d3fa_: 3d3f A: [199223]
        automated match to d3d3fb_
        complexed with ndp
      2. 2081395Domain d3d3fb_: 3d3f B: [196581]
        automated match to d1vbja_
        complexed with ndp
    4. Domains for 3f7j:
      1. 2081389Domain d3f7ja_: 3f7j A: [199392]
        automated match to d3f7jb_
        complexed with k, no3
      2. 2081390Domain d3f7jb_: 3f7j B: [196104]
        automated match to d1vbja_
        complexed with k, no3
  3. 2081396Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [229247] (2 PDB entries)
    1. Domains for 4ijc:
      1. 2081399Domain d4ijca_: 4ijc A: [234866]
        automated match to d4ijrc_
        complexed with gol, so4
      2. 2081400Domain d4ijcb_: 4ijc B: [234865]
        automated match to d4ijrc_
        complexed with gol, so4
    2. Domains for 4ijr:
      1. 2081397Domain d4ijra_: 4ijr A: [234867]
        automated match to d4ijrc_
        complexed with ndp
      2. 2081398Domain d4ijrc_: 4ijr C: [229248]
        automated match to d2fvla_
        complexed with ndp
  4. 2081401Barley (Hordeum vulgare) [TaxId:4513] [255051] (3 PDB entries)
    1. Domain for 2bgq:
    2. Domain for 2bgs:
    3. Domain for 2vdg:
  5. 2081405Brucella melitensis [TaxId:359391] [225946] (1 PDB entry)
  6. 2081410Candida parapsilosis [TaxId:5480] [224874] (3 PDB entries)
    1. Domain for 3vxg:
    2. Domains for 3wg6:
      1. 2081414Domain d3wg6a_: 3wg6 A: [218237]
        automated match to d1mzra_
        complexed with ndp
      2. 2081415Domain d3wg6b_: 3wg6 B: [218238]
        automated match to d1mzra_
        complexed with ndp
      3. 2081416Domain d3wg6c_: 3wg6 C: [218239]
        automated match to d1mzra_
        complexed with ndp
      4. 2081417Domain d3wg6d_: 3wg6 D: [218240]
        automated match to d1mzra_
        complexed with ndp
    3. Domains for 4h8n:
      1. 2081412Domain d4h8na_: 4h8n A: [234631]
        automated match to d3wg6c_
        complexed with ndp
      2. 2081413Domain d4h8nb_: 4h8n B: [236010]
        automated match to d4h8na_
        complexed with ndp
  7. 2081418Escherichia coli K-12 [TaxId:83333] [226398] (2 PDB entries)
    1. Domains for 4ast:
      1. 2081427Domain d4asta_: 4ast A: [195388]
        automated match to d3n6qd_
      2. 2081428Domain d4astb_: 4ast B: [195389]
        automated match to d3n6qd_
      3. 2081429Domain d4astc_: 4ast C: [195386]
        automated match to d3n6qd_
      4. 2081430Domain d4astd_: 4ast D: [195393]
        automated match to d3n6qd_
      5. 2081431Domain d4aste_: 4ast E: [195392]
        automated match to d3n6qd_
      6. 2081432Domain d4astf_: 4ast F: [195391]
        automated match to d3n6qd_
      7. 2081433Domain d4astg_: 4ast G: [195390]
        automated match to d3n6qd_
      8. 2081434Domain d4asth_: 4ast H: [195387]
        automated match to d3n6qd_
    2. Domains for 4aub:
      1. 2081419Domain d4auba_: 4aub A: [219152]
        automated match to d3n6qa_
        complexed with flc, nap
      2. 2081420Domain d4aubb_: 4aub B: [219153]
        automated match to d3n6qa_
        complexed with flc, nap
      3. 2081421Domain d4aubc_: 4aub C: [219154]
        automated match to d3n6qa_
        complexed with flc, nap
      4. 2081422Domain d4aubd_: 4aub D: [219155]
        automated match to d3n6qa_
        complexed with flc, nap
      5. 2081423Domain d4aube_: 4aub E: [219156]
        automated match to d3n6qa_
        complexed with flc, nap
      6. 2081424Domain d4aubf_: 4aub F: [219157]
        automated match to d3n6qa_
        complexed with flc, nap
      7. 2081425Domain d4aubg_: 4aub G: [219158]
        automated match to d3n6qa_
        complexed with flc, nap
      8. 2081426Domain d4aubh_: 4aub H: [219159]
        automated match to d3n6qa_
        complexed with flc, nap
  8. 2081435Escherichia coli [TaxId:668369] [189989] (1 PDB entry)
  9. 2081444Giardia lamblia [TaxId:184922] [255910] (1 PDB entry)
  10. 2081447Gluconobacter oxydans [TaxId:290633] [256462] (2 PDB entries)
    1. Domains for 3wbw:
      1. 2081448Domain d3wbwa_: 3wbw A: [256463]
        automated match to d3f7ja_
        complexed with ndp, so4
      2. 2081449Domain d3wbwb_: 3wbw B: [262369]
        automated match to d3f7ja_
        complexed with ndp, so4
    2. Domains for 3wbx:
      1. 2081450Domain d3wbxa_: 3wbx A: [265591]
        automated match to d3f7ja_
        complexed with so4
      2. 2081451Domain d3wbxb_: 3wbx B: [265592]
        automated match to d3f7ja_
        complexed with so4
  11. 2081452Gluconobacter oxydans [TaxId:442] [189401] (1 PDB entry)
  12. 2081454Klebsiella pneumoniae [TaxId:573] [267995] (1 PDB entry)
  13. 2081456Leishmania major [TaxId:347515] [194809] (2 PDB entries)
    1. Domains for 4f40:
      1. 2081457Domain d4f40a_: 4f40 A: [221018]
        automated match to d4g5da_
        complexed with cit, cl, edo
      2. 2081458Domain d4f40b_: 4f40 B: [221019]
        automated match to d4g5da_
        complexed with cit, cl, edo
    2. Domains for 4g5d:
      1. 2081459Domain d4g5da_: 4g5d A: [194810]
        automated match to d1vbjb_
        complexed with ndp
      2. 2081460Domain d4g5db_: 4g5d B: [202193]
        automated match to d4g5da_
        complexed with ndp
  14. 2081461Mycobacterium smegmatis [TaxId:246196] [189236] (2 PDB entries)
    1. Domains for 2wzm:
      1. 2081462Domain d2wzma_: 2wzm A: [169727]
        automated match to d1mzra_
        complexed with na7
      2. 2081463Domain d2wzmb_: 2wzm B: [169728]
        automated match to d1mzra_
        complexed with na7
    2. Domains for 2wzt:
      1. 2081464Domain d2wzta_: 2wzt A: [169735]
        automated match to d1mzra_
      2. 2081465Domain d2wztb_: 2wzt B: [169736]
        automated match to d1mzra_
  15. 2081466Mycobacterium tuberculosis [TaxId:1773] [257325] (1 PDB entry)
  16. 2081468Rauvolfia serpentina [TaxId:4060] [226312] (3 PDB entries)
    1. Domain for 3v0s:
    2. Domain for 3v0t:
    3. Domain for 3v0u:
  17. 2081472Rhizobium meliloti [TaxId:266834] [257512] (3 PDB entries)
    1. Domain for 4pmj:
    2. Domain for 4xap:
    3. Domain for 5c7h:
  18. 2081476Salmonella enterica [TaxId:99287] [225546] (2 PDB entries)
    1. Domains for 3erp:
      1. 2081477Domain d3erpa_: 3erp A: [209618]
        automated match to d3n6qa_
        complexed with cac, cl, edo, na, zn
      2. 2081478Domain d3erpb_: 3erp B: [209619]
        automated match to d3n6qa_
        complexed with cac, cl, edo, na, zn
    2. Domain for 5t79:
  19. 2081479Schistosoma japonicum [TaxId:6182] [226697] (1 PDB entry)
  20. 2081481Silkworm (Bombyx mori) [TaxId:7091] [230326] (1 PDB entry)
  21. 2081483Sinorhizobium meliloti [TaxId:266834] [256124] (1 PDB entry)
  22. 2081486Thale cress (Arabidopsis thaliana) [TaxId:3702] [225720] (2 PDB entries)
    1. Domain for 3h7r:
    2. Domain for 3h7u:
  23. 2081489Trypanosoma cruzi [TaxId:353153] [226444] (2 PDB entries)
    1. Domains for 4fzi:
      1. 2081491Domain d4fzia_: 4fzi A: [234435]
        automated match to d4giea_
        complexed with glu, so4
      2. 2081492Domain d4fzib_: 4fzi B: [234436]
        automated match to d4giea_
        complexed with glu, so4
    2. Domain for 4gie:
  24. 2081493Trypanosome (Trypanosoma brucei) [TaxId:5691] [188050] (1 PDB entry)
  25. 2281623Zea mays [TaxId:4577] [324924] (2 PDB entries)
    1. Domain for 5jh1:
    2. Domain for 5jh2:
  26. 2285459Coptotermes gestroi [TaxId:232242] [328760] (1 PDB entry)

More info for Protein automated matches from c.1.7.0: automated matches

Timeline for Protein automated matches from c.1.7.0: automated matches: