Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2080913Superfamily c.1.7: NAD(P)-linked oxidoreductase [51430] (2 families) (S)
  5. 2081379Family c.1.7.0: automated matches [191491] (1 protein)
    not a true family
  6. 2081380Protein automated matches [190793] (26 species)
    not a true protein

Species:

  1. 2081381Bacillus halodurans [TaxId:272558] [225042] (2 PDB entries)
    1. Domains for 1ynp:
      1. 2081382Domain d1ynpa1: 1ynp A:1-297 [203208]
        Other proteins in same PDB: d1ynpa2, d1ynpb2
        automated match to d4asth_
        complexed with gol, na, so4, suc
      2. 2081383Domain d1ynpb1: 1ynp B:1-297 [203209]
        Other proteins in same PDB: d1ynpa2, d1ynpb2
        automated match to d4asth_
        complexed with gol, na, so4, suc
    2. Domains for 1ynq:
      1. 2081384Domain d1ynqa1: 1ynq A:1-297 [203210]
        Other proteins in same PDB: d1ynqa2, d1ynqb2
        automated match to d4asth_
        complexed with gol, na, ndp, so4, suc
      2. 2081385Domain d1ynqb1: 1ynq B:1-297 [203211]
        Other proteins in same PDB: d1ynqa2, d1ynqb2
        automated match to d4asth_
        complexed with gol, na, ndp, so4, suc
  2. 2081386Bacillus subtilis [TaxId:1423] [196103] (4 PDB entries)
    1. Domains for 3b3d:
      1. 2081391Domain d3b3da_: 3b3d A: [208514]
        automated match to d3guga_
        complexed with ca
      2. 2081392Domain d3b3db_: 3b3d B: [231826]
        automated match to d3b3da_
        complexed with ca
      3. 2081393Domain d3b3dc_: 3b3d C: [208515]
        automated match to d3guga_
        complexed with ca
    2. Domains for 3b3e:
      1. 2081387Domain d3b3ea_: 3b3e A: [305054]
        automated match to d3f7ja_
        complexed with no3
      2. 2081388Domain d3b3eb_: 3b3e B: [305055]
        automated match to d3f7ja_
        complexed with no3
    3. Domains for 3d3f:
      1. 2081394Domain d3d3fa_: 3d3f A: [199223]
        automated match to d3d3fb_
        complexed with ndp
      2. 2081395Domain d3d3fb_: 3d3f B: [196581]
        automated match to d1vbja_
        complexed with ndp
    4. Domains for 3f7j:
      1. 2081389Domain d3f7ja_: 3f7j A: [199392]
        automated match to d3f7jb_
        complexed with k, no3
      2. 2081390Domain d3f7jb_: 3f7j B: [196104]
        automated match to d1vbja_
        complexed with k, no3
  3. 2081396Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [229247] (2 PDB entries)
    1. Domains for 4ijc:
      1. 2081399Domain d4ijca_: 4ijc A: [234866]
        automated match to d4ijrc_
        complexed with gol, so4
      2. 2081400Domain d4ijcb_: 4ijc B: [234865]
        automated match to d4ijrc_
        complexed with gol, so4
    2. Domains for 4ijr:
      1. 2081397Domain d4ijra_: 4ijr A: [234867]
        automated match to d4ijrc_
        complexed with ndp
      2. 2081398Domain d4ijrc_: 4ijr C: [229248]
        automated match to d2fvla_
        complexed with ndp
  4. 2081401Barley (Hordeum vulgare) [TaxId:4513] [255051] (3 PDB entries)
    1. Domain for 2bgq:
    2. Domain for 2bgs:
    3. Domain for 2vdg:
  5. 2081405Brucella melitensis [TaxId:359391] [225946] (1 PDB entry)
  6. 2081410Candida parapsilosis [TaxId:5480] [224874] (3 PDB entries)
    1. Domain for 3vxg:
    2. Domains for 3wg6:
      1. 2081414Domain d3wg6a_: 3wg6 A: [218237]
        automated match to d1mzra_
        complexed with ndp
      2. 2081415Domain d3wg6b_: 3wg6 B: [218238]
        automated match to d1mzra_
        complexed with ndp
      3. 2081416Domain d3wg6c_: 3wg6 C: [218239]
        automated match to d1mzra_
        complexed with ndp
      4. 2081417Domain d3wg6d_: 3wg6 D: [218240]
        automated match to d1mzra_
        complexed with ndp
    3. Domains for 4h8n:
      1. 2081412Domain d4h8na_: 4h8n A: [234631]
        automated match to d3wg6c_
        complexed with ndp
      2. 2081413Domain d4h8nb_: 4h8n B: [236010]
        automated match to d4h8na_
        complexed with ndp
  7. 2081418Escherichia coli K-12 [TaxId:83333] [226398] (2 PDB entries)
    1. Domains for 4ast:
      1. 2081427Domain d4asta_: 4ast A: [195388]
        automated match to d3n6qd_
      2. 2081428Domain d4astb_: 4ast B: [195389]
        automated match to d3n6qd_
      3. 2081429Domain d4astc_: 4ast C: [195386]
        automated match to d3n6qd_
      4. 2081430Domain d4astd_: 4ast D: [195393]
        automated match to d3n6qd_
      5. 2081431Domain d4aste_: 4ast E: [195392]
        automated match to d3n6qd_
      6. 2081432Domain d4astf_: 4ast F: [195391]
        automated match to d3n6qd_
      7. 2081433Domain d4astg_: 4ast G: [195390]
        automated match to d3n6qd_
      8. 2081434Domain d4asth_: 4ast H: [195387]
        automated match to d3n6qd_
    2. Domains for 4aub:
      1. 2081419Domain d4auba_: 4aub A: [219152]
        automated match to d3n6qa_
        complexed with flc, nap
      2. 2081420Domain d4aubb_: 4aub B: [219153]
        automated match to d3n6qa_
        complexed with flc, nap
      3. 2081421Domain d4aubc_: 4aub C: [219154]
        automated match to d3n6qa_
        complexed with flc, nap
      4. 2081422Domain d4aubd_: 4aub D: [219155]
        automated match to d3n6qa_
        complexed with flc, nap
      5. 2081423Domain d4aube_: 4aub E: [219156]
        automated match to d3n6qa_
        complexed with flc, nap
      6. 2081424Domain d4aubf_: 4aub F: [219157]
        automated match to d3n6qa_
        complexed with flc, nap
      7. 2081425Domain d4aubg_: 4aub G: [219158]
        automated match to d3n6qa_
        complexed with flc, nap
      8. 2081426Domain d4aubh_: 4aub H: [219159]
        automated match to d3n6qa_
        complexed with flc, nap
  8. 2081435Escherichia coli [TaxId:668369] [189989] (1 PDB entry)
  9. 2081444Giardia lamblia [TaxId:184922] [255910] (1 PDB entry)
  10. 2081447Gluconobacter oxydans [TaxId:290633] [256462] (2 PDB entries)
    1. Domains for 3wbw:
      1. 2081448Domain d3wbwa_: 3wbw A: [256463]
        automated match to d3f7ja_
        complexed with ndp, so4
      2. 2081449Domain d3wbwb_: 3wbw B: [262369]
        automated match to d3f7ja_
        complexed with ndp, so4
    2. Domains for 3wbx:
      1. 2081450Domain d3wbxa_: 3wbx A: [265591]
        automated match to d3f7ja_
        complexed with so4
      2. 2081451Domain d3wbxb_: 3wbx B: [265592]
        automated match to d3f7ja_
        complexed with so4
  11. 2081452Gluconobacter oxydans [TaxId:442] [189401] (1 PDB entry)
  12. 2081454Klebsiella pneumoniae [TaxId:573] [267995] (1 PDB entry)
  13. 2081456Leishmania major [TaxId:347515] [194809] (2 PDB entries)
    1. Domains for 4f40:
      1. 2081457Domain d4f40a_: 4f40 A: [221018]
        automated match to d4g5da_
        complexed with cit, cl, edo
      2. 2081458Domain d4f40b_: 4f40 B: [221019]
        automated match to d4g5da_
        complexed with cit, cl, edo
    2. Domains for 4g5d:
      1. 2081459Domain d4g5da_: 4g5d A: [194810]
        automated match to d1vbjb_
        complexed with ndp
      2. 2081460Domain d4g5db_: 4g5d B: [202193]
        automated match to d4g5da_
        complexed with ndp
  14. 2081461Mycobacterium smegmatis [TaxId:246196] [189236] (2 PDB entries)
    1. Domains for 2wzm:
      1. 2081462Domain d2wzma_: 2wzm A: [169727]
        automated match to d1mzra_
        complexed with na7
      2. 2081463Domain d2wzmb_: 2wzm B: [169728]
        automated match to d1mzra_
        complexed with na7
    2. Domains for 2wzt:
      1. 2081464Domain d2wzta_: 2wzt A: [169735]
        automated match to d1mzra_
      2. 2081465Domain d2wztb_: 2wzt B: [169736]
        automated match to d1mzra_
  15. 2081466Mycobacterium tuberculosis [TaxId:1773] [257325] (1 PDB entry)
  16. 2081468Rauvolfia serpentina [TaxId:4060] [226312] (3 PDB entries)
    1. Domain for 3v0s:
    2. Domain for 3v0t:
    3. Domain for 3v0u:
  17. 2081472Rhizobium meliloti [TaxId:266834] [257512] (3 PDB entries)
    1. Domain for 4pmj:
    2. Domain for 4xap:
    3. Domain for 5c7h:
  18. 2081476Salmonella enterica [TaxId:99287] [225546] (2 PDB entries)
    1. Domains for 3erp:
      1. 2081477Domain d3erpa_: 3erp A: [209618]
        automated match to d3n6qa_
        complexed with cac, cl, edo, na, zn
      2. 2081478Domain d3erpb_: 3erp B: [209619]
        automated match to d3n6qa_
        complexed with cac, cl, edo, na, zn
    2. Domain for 5t79:
  19. 2081479Schistosoma japonicum [TaxId:6182] [226697] (1 PDB entry)
  20. 2081481Silkworm (Bombyx mori) [TaxId:7091] [230326] (1 PDB entry)
  21. 2081483Sinorhizobium meliloti [TaxId:266834] [256124] (1 PDB entry)
  22. 2081486Thale cress (Arabidopsis thaliana) [TaxId:3702] [225720] (2 PDB entries)
    1. Domain for 3h7r:
    2. Domain for 3h7u:
  23. 2081489Trypanosoma cruzi [TaxId:353153] [226444] (2 PDB entries)
    1. Domains for 4fzi:
      1. 2081491Domain d4fzia_: 4fzi A: [234435]
        automated match to d4giea_
        complexed with glu, so4
      2. 2081492Domain d4fzib_: 4fzi B: [234436]
        automated match to d4giea_
        complexed with glu, so4
    2. Domain for 4gie:
  24. 2081493Trypanosome (Trypanosoma brucei) [TaxId:5691] [188050] (1 PDB entry)
  25. 2281623Zea mays [TaxId:4577] [324924] (4 PDB entries)
    1. Domains for 5jgw:
      1. 2290419Domain d5jgwa_: 5jgw A: [333720]
        automated match to d2bgqa_
        complexed with act, nap
      2. 2290436Domain d5jgwb_: 5jgw B: [333737]
        automated match to d2bgqa_
        complexed with act, nap
      3. 2290445Domain d5jgwc_: 5jgw C: [333746]
        automated match to d2bgqa_
        complexed with act, nap
      4. 2290447Domain d5jgwd_: 5jgw D: [333748]
        automated match to d2bgqa_
        complexed with act, nap
    2. Domains for 5jgy:
      1. 2290442Domain d5jgya_: 5jgy A: [333743]
        automated match to d2bgqa_
        complexed with 6kb, edo
      2. 2290495Domain d5jgyb_: 5jgy B: [333796]
        automated match to d2bgqa_
        complexed with 6kb, edo
    3. Domain for 5jh1:
    4. Domain for 5jh2:
  26. 2285459Coptotermes gestroi [TaxId:232242] [328760] (1 PDB entry)

More info for Protein automated matches from c.1.7.0: automated matches

Timeline for Protein automated matches from c.1.7.0: automated matches: