SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.10: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) [52046] (3 superfamilies)
2 curved layers, a/b; parallel beta-sheet; order 1234...N; there are sequence similarities between different superfamilies

Superfamily c.10.2: L domain-like [52058] (9 families)
less regular structure consisting of variable repeats
Family c.10.2.0: automated matches [191489] (1 protein)
not a true family
Protein automated matches [190787] (11 species)
not a true protein

Species:

Branchiostoma floridae [TaxId:7739] [311702] (1 PDB entry)
- Domains for 4xsq:
  1. Domain d4xsqa_: 4xsq A: [311709]
    Other proteins in same PDB: d4xsqb2
    automated match to d1w8aa_
    complexed with edo, gol
  2. Domain d4xsqb1: 4xsq B:21-199 [311703]
    Other proteins in same PDB: d4xsqb2
    automated match to d1w8aa_
    complexed with edo, gol
Chaetomium thermophilum [TaxId:209285] [275055] (1 PDB entry)
- Domains for 4xm4:
  1. Domain d4xm4c_: 4xm4 C: [275056]
    automated match to d1kohb_
  2. Domain d4xm4d_: 4xm4 D: [275057]
    automated match to d1kohb_
Chaetomium thermophilum [TaxId:759272] [274975] (1 PDB entry)
- Domain for 4wp6:
  - Domain d4wp6a_: 4wp6 A: [274976]
    automated match to d1fo1b_
Human (Homo sapiens) [TaxId:9606] [188042] (12 PDB entries)
1. Domains for 2hr7:
  1. Domain d2hr7a1: 2hr7 A:4-156 [242060]
    Other proteins in same PDB: d2hr7a2, d2hr7b2
    automated match to d2dtge4
    complexed with gol, nag, p33, so4
  2. Domain d2hr7a3: 2hr7 A:312-469 [242062]
    Other proteins in same PDB: d2hr7a2, d2hr7b2
    automated match to d2dtge5
    complexed with gol, nag, p33, so4
  3. Domain d2hr7b1: 2hr7 B:4-156 [242063]
    Other proteins in same PDB: d2hr7a2, d2hr7b2
    automated match to d2dtge4
    complexed with gol, nag, p33, so4
  4. Domain d2hr7b3: 2hr7 B:312-470 [242065]
    Other proteins in same PDB: d2hr7a2, d2hr7b2
    automated match to d2dtge5
    complexed with gol, nag, p33, so4
2. Domains for 2v70:
  1. Domain d2v70a_: 2v70 A: [243841]
    automated match to d2v9tb_
    complexed with nag
  2. Domain d2v70b_: 2v70 B: [243842]
    automated match to d2v9tb_
    complexed with nag
  3. Domain d2v70c_: 2v70 C: [243843]
    automated match to d2v9tb_
    complexed with nag
  4. Domain d2v70d_: 2v70 D: [243844]
    automated match to d2v9tb_
    complexed with nag
3. Domains for 2v9s:
  1. Domain d2v9sa_: 2v9s A: [168408]
    automated match to d1w8aa_
    complexed with gol, peg
  2. Domain d2v9sb_: 2v9s B: [168409]
    automated match to d1w8aa_
    complexed with gol, peg
  3. Domain d2v9sc_: 2v9s C: [168410]
    automated match to d1w8aa_
    complexed with gol, peg
  4. Domain d2v9sd_: 2v9s D: [168411]
    automated match to d1w8aa_
    complexed with gol, peg
4. Domain for 2v9t:
  - Domain d2v9tb_: 2v9t B: [168412]
    Other proteins in same PDB: d2v9ta_
    automated match to d1w8aa_
5. Domains for 2wfh:
  1. Domain d2wfha_: 2wfh A: [169305]
    automated match to d1w8aa_
    complexed with so4
  2. Domain d2wfhb_: 2wfh B: [169306]
    automated match to d1w8aa_
    complexed with so4
6. Domain for 2xwt:
  - Domain d2xwtc_: 2xwt C: [170450]
    Other proteins in same PDB: d2xwtb1, d2xwtb2
    automated match to d1xwdc1
    complexed with nag
7. Domains for 3be1:
  1. Domain d3be1a1: 3be1 A:1-164 [239157]
    Other proteins in same PDB: d3be1a2, d3be1a4, d3be1l1, d3be1l2
    automated match to d1n8yc1
    complexed with mes, nag
  2. Domain d3be1a3: 3be1 A:322-487 [239159]
    Other proteins in same PDB: d3be1a2, d3be1a4, d3be1l1, d3be1l2
    automated match to d1n8yc2
    complexed with mes, nag
8. Domain for 3g04:
  - Domain d3g04c_: 3g04 C: [176232]
    Other proteins in same PDB: d3g04a1, d3g04a2
    automated match to d1xwdc1
    complexed with nag, zn
9. Domains for 3u7u:
  1. Domain d3u7ua1: 3u7u A:1-154 [250145]
    Other proteins in same PDB: d3u7ua2
    automated match to d1n8zc1
    complexed with nag
  2. Domain d3u7ua3: 3u7u A:312-477 [250147]
    Other proteins in same PDB: d3u7ua2
    automated match to d1n8zc2
    complexed with nag
10. Domains for 4cnc:
  1. Domain d4cnca_: 4cnc A: [237123]
    automated match to d1ozna_
    complexed with gol, na, nag, peg, so4
  2. Domain d4cncb_: 4cnc B: [237122]
    automated match to d1ozna_
    complexed with gol, na, nag, peg, so4
11. Domain for 4cnm:
  - Domain d4cnma1: 4cnm A:60-344 [237124]
    Other proteins in same PDB: d4cnma2
    automated match to d1ozna_
    complexed with cit, nag, peg
12. Domains for 5my6:
  1. Domain d5my6a1: 5my6 A:24-187 [337669]
    Other proteins in same PDB: d5my6a2, d5my6b_
    automated match to d1n8zc1
    complexed with gol, nag
  2. Domain d5my6a3: 5my6 A:345-510 [337671]
    Other proteins in same PDB: d5my6a2, d5my6b_
    automated match to d1n8zc2
    complexed with gol, nag
Inshore hagfish (Eptatretus burgeri) [TaxId:7764] [193205] (2 PDB entries)
1. Domain for 2o6q:
  - Domain d2o6qa_: 2o6q A: [243304]
    automated match to d4cnma_
2. Domain for 2o6r:
  - Domain d2o6ra_: 2o6r A: [193206]
    automated match to d2wfha_
Lampetra planeri [TaxId:7750] [268556] (1 PDB entry)
- Domains for 4po4:
  1. Domain d4po4a_: 4po4 A: [268558]
    automated match to d3wo9a_
  2. Domain d4po4b_: 4po4 B: [268557]
    automated match to d3wo9a_
Lethenteron camtschaticum [TaxId:980415] [256153] (1 PDB entry)
- Domain for 3wo9:
  - Domain d3wo9a1: 3wo9 A:27-247 [250750]
    Other proteins in same PDB: d3wo9a2
    automated match to d2v9tb_
Listeria monocytogenes [TaxId:1639] [225009] (1 PDB entry)
- Domain for 1xeu:
  - Domain d1xeua1: 1xeu A:35-216 [203141]
    Other proteins in same PDB: d1xeua2
    automated match to d1m9sa5

Listeria monocytogenes [TaxId:169963] [228586] (2 PDB entries)

Domains for 4aw4:
1. Domain d4aw4a1: 4aw4 A:36-262 [234101]
  Other proteins in same PDB: d4aw4a2, d4aw4b2
  automated match to d1h6ua2
  complexed with gol, so4
2. Domain d4aw4b1: 4aw4 B:36-262 [234103]
  Other proteins in same PDB: d4aw4a2, d4aw4b2
  automated match to d1h6ua2
  complexed with gol, so4
3. Domain d4aw4c1: 4aw4 C:36-262 [234105]
  Other proteins in same PDB: d4aw4a2, d4aw4b2
  automated match to d1h6ua2
  complexed with gol, so4

Domains for 4cc4:

Domain d4cc4a1: 4cc4 A:35-219 [234301]
Other proteins in same PDB: d4cc4a2, d4cc4a3, d4cc4b1, d4cc4b2, d4cc4b3, d4cc4c2, d4cc4c3, d4cc4c4, d4cc4d_, d4cc4e2, d4cc4f1, d4cc4f2
automated match to d4cc4e1
complexed with cl, gol, pe4, po4, so4

Domain d4cc4c1: 4cc4 C:35-219 [234304]
Other proteins in same PDB: d4cc4a2, d4cc4a3, d4cc4b1, d4cc4b2, d4cc4b3, d4cc4c2, d4cc4c3, d4cc4c4, d4cc4d_, d4cc4e2, d4cc4f1, d4cc4f2
automated match to d4cc4e1
complexed with cl, gol, pe4, po4, so4

Domain d4cc4e1: 4cc4 E:35-219 [228587]
Other proteins in same PDB: d4cc4a2, d4cc4a3, d4cc4b1, d4cc4b2, d4cc4b3, d4cc4c2, d4cc4c3, d4cc4c4, d4cc4d_, d4cc4e2, d4cc4f1, d4cc4f2
automated match to d2omza2
complexed with cl, gol, pe4, po4, so4

Norway rat (Rattus norvegicus) [TaxId:10116] [238487] (2 PDB entries)
1. Domain for 4p8s:
  - Domain d4p8sa_: 4p8s A: [238488]
    automated match to d1p8ta_
    complexed with ndg
2. Domain for 4p91:
  - Domain d4p91a_: 4p91 A: [257448]
    automated match to d4p8sa_
    complexed with nag
Sea lamprey (Petromyzon marinus) [TaxId:7757] [231246] (6 PDB entries)
1. Domains for 2r9u:
  1. Domain d2r9ua1: 2r9u A:22-190 [231247]
    Other proteins in same PDB: d2r9ua2, d2r9ub2, d2r9uc2, d2r9ud2
    automated match to d2o6ra_
  2. Domain d2r9ub1: 2r9u B:22-190 [231248]
    Other proteins in same PDB: d2r9ua2, d2r9ub2, d2r9uc2, d2r9ud2
    automated match to d2o6ra_
  3. Domain d2r9uc1: 2r9u C:22-190 [231249]
    Other proteins in same PDB: d2r9ua2, d2r9ub2, d2r9uc2, d2r9ud2
    automated match to d2o6ra_
  4. Domain d2r9ud1: 2r9u D:22-190 [231250]
    Other proteins in same PDB: d2r9ua2, d2r9ub2, d2r9uc2, d2r9ud2
    automated match to d2o6ra_
2. Domain for 3g39:
  - Domain d3g39a_: 3g39 A: [232232]
    automated match to d2o6ra_
3. Domains for 3g3a:
  1. Domain d3g3aa_: 3g3a A: [232233]
    Other proteins in same PDB: d3g3ab_, d3g3ad_, d3g3af_, d3g3ah_
    automated match to d2o6ra_
  2. Domain d3g3ac_: 3g3a C: [232234]
    Other proteins in same PDB: d3g3ab_, d3g3ad_, d3g3af_, d3g3ah_
    automated match to d2o6ra_
  3. Domain d3g3ae_: 3g3a E: [232235]
    Other proteins in same PDB: d3g3ab_, d3g3ad_, d3g3af_, d3g3ah_
    automated match to d2o6ra_
  4. Domain d3g3ag_: 3g3a G: [239291]
    Other proteins in same PDB: d3g3ab_, d3g3ad_, d3g3af_, d3g3ah_
    automated match to d3g3aa_
4. Domains for 3g3b:
  1. Domain d3g3ba_: 3g3b A: [232236]
    Other proteins in same PDB: d3g3bb_, d3g3bd_, d3g3bf_, d3g3bh_
    automated match to d2o6ra_
    mutant
  2. Domain d3g3bc_: 3g3b C: [232237]
    Other proteins in same PDB: d3g3bb_, d3g3bd_, d3g3bf_, d3g3bh_
    automated match to d2o6ra_
    mutant
  3. Domain d3g3be_: 3g3b E: [239292]
    Other proteins in same PDB: d3g3bb_, d3g3bd_, d3g3bf_, d3g3bh_
    automated match to d3g3ba_
    mutant
5. Domains for 3twi:
  1. Domain d3twid_: 3twi D: [233750]
    automated match to d2o6ra_
    complexed with gol
  2. Domain d3twie1: 3twi E:21-185 [233752]
    automated match to d2o6ra_
    complexed with gol
  3. Domain d3twif_: 3twi F: [233751]
    automated match to d2o6ra_
    complexed with gol
6. Domains for 5wk4:
  1. Domain d5wk4a_: 5wk4 A: [342906]
    automated match to d2o6ra_
    complexed with mg
  2. Domain d5wk4b_: 5wk4 B: [342923]
    automated match to d2o6ra_
    complexed with mg
  3. Domain d5wk4c_: 5wk4 C: [342937]
    automated match to d2o6ra_
    complexed with mg
  4. Domain d5wk4d_: 5wk4 D: [342920]
    automated match to d2o6ra_
    complexed with mg
  5. Domain d5wk4e_: 5wk4 E: [342932]
    automated match to d2o6ra_
    complexed with mg
  6. Domain d5wk4f_: 5wk4 F: [342868]
    automated match to d2o6ra_
    complexed with mg

More info for Protein automated matches from c.10.2.0: automated matches

Timeline for Protein automated matches from c.10.2.0: automated matches:

Protein automated matches from c.10.2.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from c.10.2.0: automated matches appears in SCOPe 2.05
Protein automated matches from c.10.2.0: automated matches appears in SCOPe 2.07
Protein automated matches from c.10.2.0: automated matches appears in the current release, SCOPe 2.08