SCOPe 2.03: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.03
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

Fold c.10: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) [52046] (3 superfamilies)
2 curved layers, a/b; parallel beta-sheet; order 1234...N; there are sequence similarities between different superfamilies

Superfamily c.10.2: L domain-like [52058] (9 families)
less regular structure consisting of variable repeats
Family c.10.2.0: automated matches [191489] (1 protein)
not a true family
Protein automated matches [190787] (6 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [188042] (7 PDB entries)
1. Domains for 2v9s:
  1. Domain d2v9sa_: 2v9s A: [168408]
    automated match to d1w8aa_
    complexed with gol, peg
  2. Domain d2v9sb_: 2v9s B: [168409]
    automated match to d1w8aa_
    complexed with gol, peg
  3. Domain d2v9sc_: 2v9s C: [168410]
    automated match to d1w8aa_
    complexed with gol, peg
  4. Domain d2v9sd_: 2v9s D: [168411]
    automated match to d1w8aa_
    complexed with gol, peg
2. Domain for 2v9t:
  - Domain d2v9tb_: 2v9t B: [168412]
    Other proteins in same PDB: d2v9ta_
    automated match to d1w8aa_
3. Domains for 2wfh:
  1. Domain d2wfha_: 2wfh A: [169305]
    automated match to d1w8aa_
    complexed with so4
  2. Domain d2wfhb_: 2wfh B: [169306]
    automated match to d1w8aa_
    complexed with so4
4. Domain for 2xwt:
  - Domain d2xwtc_: 2xwt C: [170450]
    Other proteins in same PDB: d2xwtb1, d2xwtb2
    automated match to d1xwdc1
    complexed with nag
5. Domain for 3g04:
  - Domain d3g04c_: 3g04 C: [176232]
    Other proteins in same PDB: d3g04a1, d3g04a2
    automated match to d1xwdc1
    complexed with nag, zn
6. Domains for 4cnc:
  1. Domain d4cnca_: 4cnc A: [237123]
    automated match to d1ozna_
    complexed with gol, na, nag, peg, so4
  2. Domain d4cncb_: 4cnc B: [237122]
    automated match to d1ozna_
    complexed with gol, na, nag, peg, so4
7. Domain for 4cnm:
  - Domain d4cnma_: 4cnm A: [237124]
    automated match to d1ozna_
    complexed with cit, nag, peg
Inshore hagfish (Eptatretus burgeri) [TaxId:7764] [193205] (1 PDB entry)
- Domain for 2o6r:
  - Domain d2o6ra_: 2o6r A: [193206]
    automated match to d2wfha_
Listeria monocytogenes [TaxId:1639] [225009] (1 PDB entry)
- Domain for 1xeu:
  - Domain d1xeua1: 1xeu A:35-216 [203141]
    Other proteins in same PDB: d1xeua2
    automated match to d1m9sa5
Listeria monocytogenes [TaxId:169963] [228586] (2 PDB entries)
1. Domains for 4aw4:
  1. Domain d4aw4a1: 4aw4 A:36-262 [234101]
    Other proteins in same PDB: d4aw4a2, d4aw4b2
    automated match to d1h6ua2
    complexed with gol, so4
  2. Domain d4aw4b1: 4aw4 B:36-262 [234103]
    Other proteins in same PDB: d4aw4a2, d4aw4b2
    automated match to d1h6ua2
    complexed with gol, so4
  3. Domain d4aw4c1: 4aw4 C:36-262 [234105]
    Other proteins in same PDB: d4aw4a2, d4aw4b2
    automated match to d1h6ua2
    complexed with gol, so4
2. Domains for 4cc4:
  1. Domain d4cc4a1: 4cc4 A:33-219 [234301]
    Other proteins in same PDB: d4cc4a2, d4cc4b_, d4cc4c2, d4cc4d_, d4cc4e2, d4cc4f_
    automated match to d4cc4e1
    complexed with cl, gol, pe4, po4, so4
  2. Domain d4cc4c1: 4cc4 C:34-219 [234304]
    Other proteins in same PDB: d4cc4a2, d4cc4b_, d4cc4c2, d4cc4d_, d4cc4e2, d4cc4f_
    automated match to d4cc4e1
    complexed with cl, gol, pe4, po4, so4
  3. Domain d4cc4e1: 4cc4 E:35-219 [228587]
    Other proteins in same PDB: d4cc4a2, d4cc4b_, d4cc4c2, d4cc4d_, d4cc4e2, d4cc4f_
    automated match to d2omza2
    complexed with cl, gol, pe4, po4, so4
Petromyzon marinus [TaxId:7757] [231246] (5 PDB entries)
1. Domains for 2r9u:
  1. Domain d2r9ua_: 2r9u A: [231247]
    automated match to d2o6ra_
  2. Domain d2r9ub_: 2r9u B: [231248]
    automated match to d2o6ra_
  3. Domain d2r9uc_: 2r9u C: [231249]
    automated match to d2o6ra_
  4. Domain d2r9ud_: 2r9u D: [231250]
    automated match to d2o6ra_
2. Domain for 3g39:
  - Domain d3g39a_: 3g39 A: [232232]
    automated match to d2o6ra_
3. Domains for 3g3a:
  1. Domain d3g3aa_: 3g3a A: [232233]
    Other proteins in same PDB: d3g3ab_, d3g3ad_, d3g3af_, d3g3ah_
    automated match to d2o6ra_
  2. Domain d3g3ac_: 3g3a C: [232234]
    Other proteins in same PDB: d3g3ab_, d3g3ad_, d3g3af_, d3g3ah_
    automated match to d2o6ra_
  3. Domain d3g3ae_: 3g3a E: [232235]
    Other proteins in same PDB: d3g3ab_, d3g3ad_, d3g3af_, d3g3ah_
    automated match to d2o6ra_
4. Domains for 3g3b:
  1. Domain d3g3ba_: 3g3b A: [232236]
    Other proteins in same PDB: d3g3bb_, d3g3bd_, d3g3bf_, d3g3bh_
    automated match to d2o6ra_
    mutant
  2. Domain d3g3bc_: 3g3b C: [232237]
    Other proteins in same PDB: d3g3bb_, d3g3bd_, d3g3bf_, d3g3bh_
    automated match to d2o6ra_
    mutant
5. Domains for 3twi:
  1. Domain d3twid_: 3twi D: [233750]
    automated match to d2o6ra_
    complexed with gol
  2. Domain d3twie1: 3twi E:21-185 [233752]
    automated match to d2o6ra_
    complexed with gol
  3. Domain d3twif_: 3twi F: [233751]
    automated match to d2o6ra_
    complexed with gol
Rattus norvegicus [TaxId:10116] [238487] (1 PDB entry)
- Domain for 4p8s:
  - Domain d4p8sa_: 4p8s A: [238488]
    automated match to d1p8ta_
    complexed with ndg

More info for Protein automated matches from c.10.2.0: automated matches

Timeline for Protein automated matches from c.10.2.0: automated matches:

Protein automated matches from c.10.2.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from c.10.2.0: automated matches appears in SCOPe 2.02
Protein automated matches from c.10.2.0: automated matches appears in SCOPe 2.04
Protein automated matches from c.10.2.0: automated matches appears in the current release, SCOPe 2.08