Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1860688Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
    core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
  4. 1860705Superfamily c.56.2: Purine and uridine phosphorylases [53167] (2 families) (S)
    complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8
  5. 1861590Family c.56.2.0: automated matches [191488] (1 protein)
    not a true family
  6. 1861591Protein automated matches [190781] (36 species)
    not a true protein

Species:

  1. 1861592Actinobacillus succinogenes [TaxId:339671] [259290] (1 PDB entry)
  2. 1861599African malaria mosquito (Anopheles gambiae) [TaxId:7165] [255539] (1 PDB entry)
  3. 1861603Agrobacterium vitis [TaxId:373] [260251] (1 PDB entry)
  4. 1861605Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [257666] (1 PDB entry)
  5. 1861609Blood fluke (Schistosoma mansoni) [TaxId:6183] [188022] (17 PDB entries)
    1. Domains for 1tcu:
      1. 1861631Domain d1tcua_: 1tcu A: [161757]
        automated match to d1a9oa_
        complexed with act, dms, po4
      2. 1861632Domain d1tcub_: 1tcu B: [161758]
        automated match to d1a9oa_
        complexed with act, dms, po4
      3. 1861633Domain d1tcuc_: 1tcu C: [161759]
        automated match to d1a9oa_
        complexed with act, dms, po4
    2. Domains for 1tcv:
      1. 1861610Domain d1tcva_: 1tcv A: [161760]
        automated match to d1a9oa_
        complexed with act, nds
      2. 1861611Domain d1tcvb_: 1tcv B: [161761]
        automated match to d1a9oa_
        complexed with act, nds
      3. 1861612Domain d1tcvc_: 1tcv C: [161762]
        automated match to d1a9oa_
        complexed with act, nds
    3. Domains for 1td1:
      1. 1861619Domain d1td1a_: 1td1 A: [161763]
        automated match to d1a9oa_
        complexed with act
      2. 1861620Domain d1td1b_: 1td1 B: [161764]
        automated match to d1a9oa_
        complexed with act
      3. 1861621Domain d1td1c_: 1td1 C: [161765]
        automated match to d1a9oa_
        complexed with act
    4. Domains for 3djf:
      1. 1861647Domain d3djfa_: 3djf A: [173984]
        automated match to d1a9oa_
        complexed with bc3, dms, so4
      2. 1861648Domain d3djfb_: 3djf B: [173985]
        automated match to d1a9oa_
        complexed with bc3, dms, so4
      3. 1861649Domain d3djfc_: 3djf C: [173986]
        automated match to d1a9oa_
        complexed with bc3, dms, so4
    5. Domains for 3e0q:
      1. 1861622Domain d3e0qa_: 3e0q A: [174441]
        automated match to d1a9oa_
        complexed with dms, jfd
      2. 1861623Domain d3e0qb_: 3e0q B: [174442]
        automated match to d1a9oa_
        complexed with dms, jfd
      3. 1861624Domain d3e0qc_: 3e0q C: [174443]
        automated match to d1a9oa_
        complexed with dms, jfd
    6. Domains for 3e9r:
      1. 1861613Domain d3e9ra_: 3e9r A: [174776]
        automated match to d1a9oa_
        complexed with act, ade, dms, so4
      2. 1861614Domain d3e9rb_: 3e9r B: [174777]
        automated match to d1a9oa_
        complexed with act, ade, dms, so4
      3. 1861615Domain d3e9rc_: 3e9r C: [174778]
        automated match to d1a9oa_
        complexed with act, ade, dms, so4
    7. Domains for 3e9z:
      1. 1861644Domain d3e9za_: 3e9z A: [174784]
        automated match to d1a9oa_
        complexed with 6gu, act, dms, so4
      2. 1861645Domain d3e9zb_: 3e9z B: [174785]
        automated match to d1a9oa_
        complexed with 6gu, act, dms, so4
      3. 1861646Domain d3e9zc_: 3e9z C: [174786]
        automated match to d1a9oa_
        complexed with 6gu, act, dms, so4
    8. Domains for 3f8w:
      1. 1861641Domain d3f8wa_: 3f8w A: [175574]
        automated match to d1a9oa_
        complexed with adn, dms, so4
      2. 1861642Domain d3f8wb_: 3f8w B: [175575]
        automated match to d1a9oa_
        complexed with adn, dms, so4
      3. 1861643Domain d3f8wc_: 3f8w C: [175576]
        automated match to d1a9oa_
        complexed with adn, dms, so4
    9. Domains for 3faz:
      1. 1861625Domain d3faza_: 3faz A: [175630]
        automated match to d1a9oa_
        complexed with nos, so4
      2. 1861626Domain d3fazb_: 3faz B: [175631]
        automated match to d1a9oa_
        complexed with nos, so4
      3. 1861627Domain d3fazc_: 3faz C: [175632]
        automated match to d1a9oa_
        complexed with nos, so4
    10. Domains for 3fb1:
      1. 1861628Domain d3fb1a_: 3fb1 A: [175633]
        automated match to d1a9oa_
        complexed with act, r1p
      2. 1861629Domain d3fb1b_: 3fb1 B: [175634]
        automated match to d1a9oa_
        complexed with act, r1p
      3. 1861630Domain d3fb1c_: 3fb1 C: [175635]
        automated match to d1a9oa_
        complexed with act, r1p
    11. Domains for 3fnq:
      1. 1861616Domain d3fnqa_: 3fnq A: [175924]
        automated match to d1a9oa_
        complexed with dms, hpa, so4
      2. 1861617Domain d3fnqb_: 3fnq B: [175925]
        automated match to d1a9oa_
        complexed with dms, hpa, so4
      3. 1861618Domain d3fnqc_: 3fnq C: [175926]
        automated match to d1a9oa_
        complexed with dms, hpa, so4
    12. Domains for 3iex:
      1. 1861638Domain d3iexa_: 3iex A: [178289]
        automated match to d1a9oa_
        complexed with act, dms, gmp, so4
      2. 1861639Domain d3iexb_: 3iex B: [178290]
        automated match to d1a9oa_
        complexed with act, dms, gmp, so4
      3. 1861640Domain d3iexc_: 3iex C: [178291]
        automated match to d1a9oa_
        complexed with act, dms, gmp, so4
    13. Domains for 4txh:
      1. 1861650Domain d4txha_: 4txh A: [278153]
        automated match to d2xrfb_
        complexed with so4
      2. 1861651Domain d4txhb_: 4txh B: [278154]
        automated match to d2xrfb_
        complexed with so4
      3. 1861652Domain d4txhc_: 4txh C: [278155]
        automated match to d2xrfb_
        complexed with so4
      4. 1861653Domain d4txhd_: 4txh D: [278156]
        automated match to d2xrfb_
        complexed with so4
    14. Domains for 4txj:
      1. 1861634Domain d4txja_: 4txj A: [274928]
        automated match to d2xrfb_
        complexed with so4, thm
      2. 1861635Domain d4txjb_: 4txj B: [274927]
        automated match to d2xrfb_
        complexed with so4, thm
      3. 1861636Domain d4txjc_: 4txj C: [274929]
        automated match to d2xrfb_
        complexed with so4, thm
      4. 1861637Domain d4txjd_: 4txj D: [274931]
        automated match to d2xrfb_
        complexed with so4, thm
    15. Domains for 4txl:
      1. 1861654Domain d4txla_: 4txl A: [274930]
        automated match to d2xrfb_
        complexed with so4, ura
      2. 1861655Domain d4txlb_: 4txl B: [274932]
        automated match to d2xrfb_
        complexed with so4, ura
      3. 1861656Domain d4txlc_: 4txl C: [274933]
        automated match to d2xrfb_
        complexed with so4, ura
      4. 1861657Domain d4txld_: 4txl D: [274934]
        automated match to d2xrfb_
        complexed with so4, ura
    16. Domains for 4txm:
      1. 1861658Domain d4txma_: 4txm A: [278157]
        automated match to d2xrfb_
        complexed with so4, tdr
      2. 1861659Domain d4txmb_: 4txm B: [278158]
        automated match to d2xrfb_
        complexed with so4, tdr
    17. Domains for 4txn:
      1. 1861660Domain d4txna_: 4txn A: [278159]
        automated match to d2xrfb_
        complexed with so4, urf
      2. 1861661Domain d4txnb_: 4txn B: [278160]
        automated match to d2xrfb_
        complexed with so4, urf
      3. 1861662Domain d4txnc_: 4txn C: [278161]
        automated match to d2xrfb_
        complexed with so4, urf
      4. 1861663Domain d4txnd_: 4txn D: [278162]
        automated match to d2xrfb_
        complexed with so4, urf
  6. 1861664Borrelia burgdorferi [TaxId:224326] [226750] (1 PDB entry)
  7. 1861666Colwellia psychrerythraea [TaxId:167879] [278968] (1 PDB entry)
  8. 1861668Entamoeba (Entamoeba histolytica) [TaxId:5759] [189769] (2 PDB entries)
    1. Domains for 3tl6:
      1. 1861675Domain d3tl6a_: 3tl6 A: [216867]
        automated match to d3u40a_
        complexed with so4
      2. 1861676Domain d3tl6b_: 3tl6 B: [216868]
        automated match to d3u40a_
        complexed with so4
      3. 1861677Domain d3tl6c_: 3tl6 C: [216869]
        automated match to d3u40a_
        complexed with so4
      4. 1861678Domain d3tl6d_: 3tl6 D: [216870]
        automated match to d3u40d_
        complexed with so4
      5. 1861679Domain d3tl6e_: 3tl6 E: [216871]
        automated match to d3u40a_
        complexed with so4
      6. 1861680Domain d3tl6f_: 3tl6 F: [216872]
        automated match to d3u40a_
        complexed with so4
    2. Domains for 3u40:
      1. 1861669Domain d3u40a_: 3u40 A: [186074]
        automated match to d1a69a_
        complexed with adn, no3, po4
      2. 1861670Domain d3u40b_: 3u40 B: [196123]
        automated match to d3u40d_
        complexed with adn, no3, po4
      3. 1861671Domain d3u40c_: 3u40 C: [196122]
        automated match to d3u40d_
        complexed with adn, no3, po4
      4. 1861672Domain d3u40d_: 3u40 D: [186075]
        automated match to d1a69a_
        complexed with adn, no3, po4
      5. 1861673Domain d3u40e_: 3u40 E: [200923]
        automated match to d3u40a_
        complexed with adn, no3, po4
      6. 1861674Domain d3u40f_: 3u40 F: [196124]
        automated match to d3u40d_
        complexed with adn, no3, po4
  9. 1861681Escherichia coli [TaxId:331111] [276238] (1 PDB entry)
  10. 1861683Escherichia coli [TaxId:562] [230430] (2 PDB entries)
    1. Domains for 1yqq:
      1. 1861684Domain d1yqqa_: 1yqq A: [230431]
        automated match to d3odga_
        complexed with gun, po4
      2. 1861685Domain d1yqqb_: 1yqq B: [230432]
        automated match to d3odga_
        complexed with gun, po4
      3. 1861686Domain d1yqqc_: 1yqq C: [230433]
        automated match to d3odga_
        complexed with gun, po4
    2. Domains for 1yqu:
      1. 1861687Domain d1yqua_: 1yqu A: [241058]
        automated match to d1yqqa_
        complexed with gun, po4
      2. 1861688Domain d1yqub_: 1yqu B: [241059]
        automated match to d1yqqa_
        complexed with gun, po4
      3. 1861689Domain d1yquc_: 1yqu C: [241060]
        automated match to d1yqqa_
        complexed with gun, po4
  11. 1861690Escherichia coli [TaxId:83333] [276399] (1 PDB entry)
  12. 1861692Francisella philomiragia [TaxId:484022] [226629] (1 PDB entry)
  13. 1861695Grouper iridovirus [TaxId:127569] [189220] (1 PDB entry)
  14. 1861700Helicobacter pylori [TaxId:85962] [227827] (5 PDB entries)
    1. Domains for 4bmx:
      1. 1861704Domain d4bmxa_: 4bmx A: [227831]
        automated match to d4f2wb_
        complexed with ade, trs
      2. 1861705Domain d4bmxb_: 4bmx B: [234201]
        automated match to d4bmxa_
        complexed with ade, trs
    2. Domains for 4bmy:
      1. 1861702Domain d4bmya_: 4bmy A: [227830]
        automated match to d4f2wb_
        complexed with so4; mutant
      2. 1861703Domain d4bmyb_: 4bmy B: [234202]
        automated match to d4bmya_
        complexed with so4; mutant
    3. Domains for 4bmz:
      1. 1861706Domain d4bmza_: 4bmz A: [227828]
        automated match to d4f2pb_
        complexed with mta; mutant
      2. 1861707Domain d4bmzb_: 4bmz B: [227829]
        automated match to d4f2pb_
        complexed with mta; mutant
    4. Domains for 4bn0:
      1. 1861708Domain d4bn0a_: 4bn0 A: [227832]
        automated match to d4f2pb_
        mutant
      2. 1861709Domain d4bn0b_: 4bn0 B: [234203]
        automated match to d4bn0a_
        mutant
      3. 1861710Domain d4bn0c_: 4bn0 C: [234204]
        automated match to d4bn0a_
        mutant
      4. 1861711Domain d4bn0d_: 4bn0 D: [234205]
        automated match to d4bn0a_
        mutant
    5. Domain for 4ojt:
  15. 1861712Helicobacter pylori [TaxId:85963] [189517] (11 PDB entries)
    1. Domains for 3nm4:
      1. 1861715Domain d3nm4a_: 3nm4 A: [182385]
        automated match to d1jysa_
        complexed with edo, trs
      2. 1861716Domain d3nm4b_: 3nm4 B: [182386]
        automated match to d1jysa_
        complexed with edo, trs
    2. Domains for 3nm5:
      1. 1861717Domain d3nm5a_: 3nm5 A: [182387]
        automated match to d1jysa_
        complexed with fmc
      2. 1861718Domain d3nm5b_: 3nm5 B: [182388]
        automated match to d1jysa_
        complexed with fmc
    3. Domain for 3nm6:
    4. Domain for 4ffs:
    5. Domain for 4oy3:
    6. Domain for 4p54:
    7. Domain for 4wkn:
    8. Domain for 4wko:
    9. Domains for 4wkp:
      1. 1861721Domain d4wkpa_: 4wkp A: [279637]
        automated match to d3nm6b_
        complexed with 3qa, so4
      2. 1861722Domain d4wkpb_: 4wkp B: [279636]
        automated match to d3nm6b_
        complexed with 3qa, so4
      3. 1861723Domain d4wkpc_: 4wkp C: [279640]
        automated match to d3nm6b_
        complexed with 3qa, so4
      4. 1861724Domain d4wkpd_: 4wkp D: [279638]
        automated match to d3nm6b_
        complexed with 3qa, so4
    10. Domain for 4ynb:
    11. Domains for 4yo8:
      1. 1861728Domain d4yo8a_: 4yo8 A: [279655]
        automated match to d3nm6b_
        complexed with 4ez, zn
      2. 1861729Domain d4yo8b_: 4yo8 B: [279656]
        automated match to d3nm6b_
        complexed with 4ez, zn
  16. 1861730Human (Homo sapiens) [TaxId:9606] [267813] (1 PDB entry)
  17. 1861734Leptotrichia buccalis [TaxId:523794] [224900] (1 PDB entry)
  18. 1861738Meiothermus ruber [TaxId:504728] [224901] (2 PDB entries)
    1. Domains for 4m3n:
      1. 1861739Domain d4m3na_: 4m3n A: [224817]
        automated match to d1vhwe_
        complexed with mg, po4
      2. 1861740Domain d4m3nb_: 4m3n B: [224818]
        automated match to d1vhwe_
        complexed with mg, po4
      3. 1861741Domain d4m3nc_: 4m3n C: [224819]
        automated match to d1vhwe_
        complexed with mg, po4
    2. Domains for 4mar:
      1. 1861742Domain d4mara_: 4mar A: [228246]
        automated match to d4m3na_
        complexed with mg, so4
      2. 1861743Domain d4marb_: 4mar B: [228247]
        automated match to d4m3na_
        complexed with mg, so4
      3. 1861744Domain d4marc_: 4mar C: [228248]
        automated match to d4m3na_
        complexed with mg, so4
  19. 1861745Planctomyces limnophilus [TaxId:521674] [226754] (1 PDB entry)
  20. 1861752Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [189329] (1 PDB entry)
  21. 1861754Porphyromonas gingivalis [TaxId:431947] [230181] (2 PDB entries)
    1. Domains for 4ns1:
      1. 1861758Domain d4ns1a_: 4ns1 A: [235822]
        automated match to d4ns1b_
        complexed with da, gol, so4
      2. 1861759Domain d4ns1b_: 4ns1 B: [230182]
        automated match to d1lvuc_
        complexed with da, gol, so4
      3. 1861760Domain d4ns1c_: 4ns1 C: [235820]
        automated match to d4ns1b_
        complexed with da, gol, so4
      4. 1861761Domain d4ns1d_: 4ns1 D: [235821]
        automated match to d4ns1b_
        complexed with da, gol, so4
    2. Domains for 4nsn:
      1. 1861755Domain d4nsna_: 4nsn A: [235826]
        automated match to d4ns1b_
        complexed with ade, so4
      2. 1861756Domain d4nsnb_: 4nsn B: [235823]
        automated match to d4ns1b_
        complexed with ade, so4
      3. 1861757Domain d4nsnc_: 4nsn C: [235827]
        automated match to d4ns1b_
        complexed with ade, so4
  22. 1861762Shewanella oneidensis [TaxId:211586] [226734] (1 PDB entry)
  23. 1861764Spirosoma linguale [TaxId:504472] [226736] (1 PDB entry)
  24. 1861766Streptococcus agalactiae [TaxId:1105274] [258546] (1 PDB entry)
  25. 1861768Streptococcus mutans [TaxId:210007] [255925] (2 PDB entries)
    1. Domain for 3la8:
    2. Domain for 3lba:
  26. 1861771Streptococcus pneumoniae [TaxId:171101] [188196] (1 PDB entry)
  27. 1861778Streptococcus pyogenes [TaxId:301450] [256042] (1 PDB entry)
  28. 1861797Streptococcus pyogenes [TaxId:864568] [194708] (1 PDB entry)
  29. 1861800Sulfurimonas denitrificans [TaxId:326298] [226661] (1 PDB entry)
  30. 1861802Thale cress (Arabidopsis thaliana) [TaxId:3702] [196600] (6 PDB entries)
    1. Domains for 2h8g:
      1. 1861803Domain d2h8ga_: 2h8g A: [230761]
        automated match to d3bsfb_
        complexed with ade
      2. 1861804Domain d2h8gb_: 2h8g B: [230762]
        automated match to d3bsfb_
        complexed with ade
    2. Domains for 2qsu:
      1. 1861809Domain d2qsua_: 2qsu A: [243636]
        automated match to d2h8ga_
      2. 1861810Domain d2qsub_: 2qsu B: [243637]
        automated match to d2h8ga_
    3. Domains for 2qtg:
      1. 1861807Domain d2qtga_: 2qtg A: [243644]
        automated match to d2h8ga_
        complexed with edo, mth
      2. 1861808Domain d2qtgb_: 2qtg B: [243645]
        automated match to d2h8ga_
        complexed with edo, mth
    4. Domains for 2qtt:
      1. 1861805Domain d2qtta_: 2qtt A: [243646]
        automated match to d2h8ga_
        complexed with ade, edo, fmc
      2. 1861806Domain d2qttb_: 2qtt B: [243647]
        automated match to d2h8ga_
        complexed with ade, edo, fmc
    5. Domains for 3bsf:
      1. 1861815Domain d3bsfa_: 3bsf A: [199115]
        automated match to d3bsfb_
        complexed with ade
      2. 1861816Domain d3bsfb_: 3bsf B: [196601]
        automated match to d3bl6a_
        complexed with ade
    6. Domains for 3lgs:
      1. 1861811Domain d3lgsa_: 3lgs A: [247464]
        automated match to d2h8ga_
        complexed with ade, edo, sah
      2. 1861812Domain d3lgsb_: 3lgs B: [247465]
        automated match to d2h8ga_
        complexed with ade, edo, sah
      3. 1861813Domain d3lgsc_: 3lgs C: [247466]
        automated match to d2h8ga_
        complexed with ade, edo, sah
      4. 1861814Domain d3lgsd_: 3lgs D: [247467]
        automated match to d2h8ga_
        complexed with ade, edo, sah
  31. 1861817Toxoplasma gondii [TaxId:5811] [267856] (1 PDB entry)
  32. 1861820Uncultured bacterium [TaxId:77133] [193248] (2 PDB entries)
    1. Domain for 4glf:
    2. Domain for 4glj:
  33. 1861823Vibrio cholerae [TaxId:345073] [276178] (2 PDB entries)
    1. Domains for 4wkb:
      1. 1861824Domain d4wkba_: 4wkb A: [276180]
        automated match to d4qezb_
        complexed with tdi
      2. 1861825Domain d4wkbb_: 4wkb B: [276179]
        automated match to d4qezb_
        complexed with tdi
    2. Domains for 4x24:
      1. 1861826Domain d4x24a_: 4x24 A: [276187]
        automated match to d4qezb_
        complexed with pge, tdi
      2. 1861827Domain d4x24b_: 4x24 B: [276188]
        automated match to d4qezb_
        complexed with pge, tdi
  34. 1861828Vibrio fischeri [TaxId:312309] [226714] (4 PDB entries)
    1. Domain for 4ldn:
    2. Domain for 4lnh:
    3. Domain for 4mch:
    4. Domain for 4mci:
  35. 1861833Weissella paramesenteroides [TaxId:585506] [226681] (1 PDB entry)
  36. 1861836Yersinia pseudotuberculosis [TaxId:633] [225954] (1 PDB entry)

More info for Protein automated matches from c.56.2.0: automated matches

Timeline for Protein automated matches from c.56.2.0: automated matches: