Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1384489Fold c.71: Dihydrofolate reductase-like [53596] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 8 strands, order 34251687; strand 8 is antiparallel to the rest
  4. 1384490Superfamily c.71.1: Dihydrofolate reductase-like [53597] (3 families) (S)
  5. 1384874Family c.71.1.0: automated matches [191485] (1 protein)
    not a true family
  6. 1384875Protein automated matches [190777] (16 species)
    not a true protein

Species:

  1. 1384876Acinetobacter baumannii [TaxId:470] [226628] (2 PDB entries)
    1. Domains for 3zpc:
      1. 1384878Domain d3zpca2: 3zpc A:151-358 [218392]
        Other proteins in same PDB: d3zpca1, d3zpcb1
        automated match to d2hxva1
        complexed with act, po4, zn
      2. 1384879Domain d3zpcb2: 3zpc B:151-358 [218394]
        Other proteins in same PDB: d3zpca1, d3zpcb1
        automated match to d2hxva1
        complexed with act, po4, zn
    2. Domain for 3zpg:
  2. 1384880Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [188674] (19 PDB entries)
    1. Domains for 3e0b:
      1. 1384905Domain d3e0ba_: 3e0b A: [174431]
        automated match to d1draa_
        complexed with n22, nap
      2. 1384906Domain d3e0bb_: 3e0b B: [174432]
        automated match to d1draa_
        complexed with n22, nap
    2. Domains for 3fl8:
      1. 1384907Domain d3fl8a_: 3fl8 A: [175873]
        automated match to d1draa_
        complexed with ca, rar
      2. 1384908Domain d3fl8b_: 3fl8 B: [175874]
        automated match to d1draa_
        complexed with ca, rar
      3. 1384909Domain d3fl8c_: 3fl8 C: [175875]
        automated match to d1draa_
        complexed with ca, rar
      4. 1384910Domain d3fl8d_: 3fl8 D: [175876]
        automated match to d1draa_
        complexed with ca, rar
      5. 1384911Domain d3fl8e_: 3fl8 E: [175877]
        automated match to d1draa_
        complexed with ca, rar
      6. 1384912Domain d3fl8f_: 3fl8 F: [175878]
        automated match to d1draa_
        complexed with ca, rar
      7. 1384913Domain d3fl8g_: 3fl8 G: [175879]
        automated match to d1draa_
        complexed with ca, rar
      8. 1384914Domain d3fl8h_: 3fl8 H: [175880]
        automated match to d1draa_
        complexed with ca, rar
    3. Domains for 3fl9:
      1. 1384943Domain d3fl9a_: 3fl9 A: [175881]
        automated match to d1draa_
        complexed with ca, top
      2. 1384944Domain d3fl9b_: 3fl9 B: [175882]
        automated match to d1draa_
        complexed with ca, top
      3. 1384945Domain d3fl9c_: 3fl9 C: [175883]
        automated match to d1draa_
        complexed with ca, top
      4. 1384946Domain d3fl9d_: 3fl9 D: [175884]
        automated match to d1draa_
        complexed with ca, top
      5. 1384947Domain d3fl9e_: 3fl9 E: [175885]
        automated match to d1draa_
        complexed with ca, top
      6. 1384948Domain d3fl9f_: 3fl9 F: [175886]
        automated match to d1draa_
        complexed with ca, top
      7. 1384949Domain d3fl9g_: 3fl9 G: [175887]
        automated match to d1draa_
        complexed with ca, top
      8. 1384950Domain d3fl9h_: 3fl9 H: [175888]
        automated match to d1draa_
        complexed with ca, top
    4. Domains for 3jvx:
      1. 1384901Domain d3jvxa_: 3jvx A: [178852]
        automated match to d1draa_
        complexed with ekb, nap
      2. 1384902Domain d3jvxb_: 3jvx B: [191746]
        automated match to d3e0ba_
        complexed with ekb, nap
    5. Domains for 3jw3:
      1. 1384941Domain d3jw3a_: 3jw3 A: [178859]
        automated match to d1draa_
        complexed with nap, top
      2. 1384942Domain d3jw3b_: 3jw3 B: [178860]
        automated match to d1draa_
        complexed with nap, top
    6. Domains for 3jw5:
      1. 1384959Domain d3jw5a_: 3jw5 A: [178864]
        automated match to d1draa_
        complexed with nap, top
      2. 1384960Domain d3jw5b_: 3jw5 B: [178865]
        automated match to d1draa_
        complexed with nap, top
    7. Domains for 3jwc:
      1. 1384933Domain d3jwca_: 3jwc A: [178869]
        automated match to d1draa_
        complexed with ekb, nap
      2. 1384934Domain d3jwcb_: 3jwc B: [178870]
        automated match to d1draa_
        complexed with ekb, nap
    8. Domains for 3jwf:
      1. 1384937Domain d3jwfa_: 3jwf A: [178871]
        automated match to d1draa_
        complexed with 5wa, nap
      2. 1384938Domain d3jwfb_: 3jwf B: [178872]
        automated match to d1draa_
        complexed with 5wa, nap
    9. Domains for 3jwk:
      1. 1384891Domain d3jwka_: 3jwk A: [178873]
        automated match to d1draa_
        complexed with 5wb, nap
      2. 1384892Domain d3jwkb_: 3jwk B: [178874]
        automated match to d1draa_
        complexed with 5wb, nap
    10. Domains for 3jwm:
      1. 1384935Domain d3jwma_: 3jwm A: [178875]
        automated match to d1draa_
        complexed with 5wb, nap
      2. 1384936Domain d3jwmb_: 3jwm B: [178876]
        automated match to d1draa_
        complexed with 5wb, nap
    11. Domains for 3s9u:
      1. 1384881Domain d3s9ua_: 3s9u A: [195135]
        automated match to d3jwma_
        complexed with 5dr, nap
      2. 1384882Domain d3s9ub_: 3s9u B: [195134]
        automated match to d3jwma_
        complexed with 5dr, nap
    12. Domains for 3sa1:
      1. 1384939Domain d3sa1a_: 3sa1 A: [195133]
        automated match to d3jwma_
        complexed with 6dr, nap
      2. 1384940Domain d3sa1b_: 3sa1 B: [195132]
        automated match to d3jwma_
        complexed with 6dr, nap
    13. Domains for 3sa2:
      1. 1384923Domain d3sa2a_: 3sa2 A: [195131]
        automated match to d3jwma_
        complexed with 7dr, nap
      2. 1384924Domain d3sa2b_: 3sa2 B: [195130]
        automated match to d3jwma_
        complexed with 7dr, nap
    14. Domains for 3sai:
      1. 1384903Domain d3saia_: 3sai A: [195129]
        automated match to d3jwma_
        complexed with 9dr, nap, ni, peg
      2. 1384904Domain d3saib_: 3sai B: [195128]
        automated match to d3jwma_
        complexed with 9dr, nap, ni, peg
    15. Domains for 4elb:
      1. 1384951Domain d4elba_: 4elb A: [192883]
        automated match to d3fl8a_
        complexed with 34r, 34s, ca, cl
      2. 1384952Domain d4elbb_: 4elb B: [192884]
        automated match to d3fl8a_
        complexed with 34r, 34s, ca, cl
      3. 1384953Domain d4elbc_: 4elb C: [192880]
        automated match to d3fl8a_
        complexed with 34r, 34s, ca, cl
      4. 1384954Domain d4elbd_: 4elb D: [192630]
        automated match to d3fl8a_
        complexed with 34r, 34s, ca, cl
      5. 1384955Domain d4elbe_: 4elb E: [192876]
        automated match to d3fl8a_
        complexed with 34r, 34s, ca, cl
      6. 1384956Domain d4elbf_: 4elb F: [192881]
        automated match to d3fl8a_
        complexed with 34r, 34s, ca, cl
      7. 1384957Domain d4elbg_: 4elb G: [192882]
        automated match to d3fl8a_
        complexed with 34r, 34s, ca, cl
      8. 1384958Domain d4elbh_: 4elb H: [192886]
        automated match to d3fl8a_
        complexed with 34r, 34s, ca, cl
    16. Domains for 4ele:
      1. 1384915Domain d4elea_: 4ele A: [192863]
        automated match to d3fl8a_
        complexed with 31i, ca, cl
      2. 1384916Domain d4eleb_: 4ele B: [192861]
        automated match to d3fl8a_
        complexed with 31i, ca, cl
      3. 1384917Domain d4elec_: 4ele C: [192865]
        automated match to d3fl8a_
        complexed with 31i, ca, cl
      4. 1384918Domain d4eled_: 4ele D: [192625]
        automated match to d3fl8a_
        complexed with 31i, ca, cl
      5. 1384919Domain d4elee_: 4ele E: [192862]
        automated match to d3fl8a_
        complexed with 31i, ca, cl
      6. 1384920Domain d4elef_: 4ele F: [192864]
        automated match to d3fl8a_
        complexed with 31i, ca, cl
      7. 1384921Domain d4eleg_: 4ele G: [192626]
        automated match to d3fl8a_
        complexed with 31i, ca, cl
      8. 1384922Domain d4eleh_: 4ele H: [192866]
        automated match to d3fl8a_
        complexed with 31i, ca, cl
    17. Domains for 4elf:
      1. 1384925Domain d4elfa_: 4elf A: [192887]
        automated match to d3fl8a_
        complexed with 35i, ca, cl
      2. 1384926Domain d4elfb_: 4elf B: [192893]
        automated match to d3fl8a_
        complexed with 35i, ca, cl
      3. 1384927Domain d4elfc_: 4elf C: [192888]
        automated match to d3fl8a_
        complexed with 35i, ca, cl
      4. 1384928Domain d4elfd_: 4elf D: [192890]
        automated match to d3fl8a_
        complexed with 35i, ca, cl
      5. 1384929Domain d4elfe_: 4elf E: [192631]
        automated match to d3fl8a_
        complexed with 35i, ca, cl
      6. 1384930Domain d4elff_: 4elf F: [192889]
        automated match to d3fl8a_
        complexed with 35i, ca, cl
      7. 1384931Domain d4elfg_: 4elf G: [192891]
        automated match to d3fl8a_
        complexed with 35i, ca, cl
      8. 1384932Domain d4elfh_: 4elf H: [192892]
        automated match to d3fl8a_
        complexed with 35i, ca, cl
    18. Domains for 4elg:
      1. 1384893Domain d4elga_: 4elg A: [192875]
        automated match to d3fl8a_
        complexed with 52i, 52j, ca, cl
      2. 1384894Domain d4elgb_: 4elg B: [192873]
        automated match to d3fl8a_
        complexed with 52i, 52j, ca, cl
      3. 1384895Domain d4elgc_: 4elg C: [192885]
        automated match to d3fl8a_
        complexed with 52i, 52j, ca, cl
      4. 1384896Domain d4elgd_: 4elg D: [192629]
        automated match to d3fl8a_
        complexed with 52i, 52j, ca, cl
      5. 1384897Domain d4elge_: 4elg E: [192878]
        automated match to d3fl8a_
        complexed with 52i, 52j, ca, cl
      6. 1384898Domain d4elgf_: 4elg F: [192628]
        automated match to d3fl8a_
        complexed with 52i, 52j, ca, cl
      7. 1384899Domain d4elgg_: 4elg G: [192879]
        automated match to d3fl8a_
        complexed with 52i, 52j, ca, cl
      8. 1384900Domain d4elgh_: 4elg H: [192877]
        automated match to d3fl8a_
        complexed with 52i, 52j, ca, cl
    19. Domains for 4elh:
      1. 1384883Domain d4elha_: 4elh A: [192627]
        automated match to d3fl8a_
        complexed with 53i, 53j, ca, cl
      2. 1384884Domain d4elhb_: 4elh B: [192874]
        automated match to d3fl8a_
        complexed with 53i, 53j, ca, cl
      3. 1384885Domain d4elhc_: 4elh C: [192872]
        automated match to d3fl8a_
        complexed with 53i, 53j, ca, cl
      4. 1384886Domain d4elhd_: 4elh D: [192868]
        automated match to d3fl8a_
        complexed with 53i, 53j, ca, cl
      5. 1384887Domain d4elhe_: 4elh E: [192869]
        automated match to d3fl8a_
        complexed with 53i, 53j, ca, cl
      6. 1384888Domain d4elhf_: 4elh F: [192867]
        automated match to d3fl8a_
        complexed with 53i, 53j, ca, cl
      7. 1384889Domain d4elhg_: 4elh G: [192870]
        automated match to d3fl8a_
        complexed with 53i, 53j, ca, cl
      8. 1384890Domain d4elhh_: 4elh H: [192871]
        automated match to d3fl8a_
        complexed with 53i, 53j, ca, cl
  3. 1384961Babesia bovis [TaxId:484906] [232542] (1 PDB entry)
  4. 1384964Babesia bovis [TaxId:5865] [233032] (1 PDB entry)
  5. 1384967Bacillus anthracis [TaxId:260799] [188005] (2 PDB entries)
    1. Domain for 2qk8:
    2. Domain for 3dat:
  6. 1384970Blood fluke (Schistosoma mansoni) [TaxId:6183] [226613] (1 PDB entry)
  7. 1384972Candida glabrata [TaxId:5478] [188965] (7 PDB entries)
    1. Domains for 3eej:
      1. 1384979Domain d3eeja_: 3eej A: [174893]
        automated match to d1ai9a_
        complexed with 53r, nap
      2. 1384980Domain d3eejb_: 3eej B: [174894]
        automated match to d1ai9a_
        complexed with 53r, nap
    2. Domains for 3eek:
      1. 1384977Domain d3eeka_: 3eek A: [174895]
        automated match to d1ai9a_
        complexed with 53s, nap
      2. 1384978Domain d3eekb_: 3eek B: [174896]
        automated match to d1ai9a_
        complexed with 53s, nap
    3. Domains for 3eel:
      1. 1384973Domain d3eela_: 3eel A: [174897]
        automated match to d1ai9a_
        complexed with 53t, nap
      2. 1384974Domain d3eelb_: 3eel B: [174898]
        automated match to d1ai9a_
        complexed with 53t, nap
    4. Domains for 3eem:
      1. 1384981Domain d3eema_: 3eem A: [174899]
        automated match to d1ai9a_
        complexed with 53v, nap
      2. 1384982Domain d3eemb_: 3eem B: [174900]
        automated match to d1ai9a_
        complexed with 53v, nap
    5. Domains for 3qlx:
      1. 1384983Domain d3qlxa_: 3qlx A: [184482]
        automated match to d1ai9a_
        complexed with nap, qlr
      2. 1384984Domain d3qlxb_: 3qlx B: [184483]
        automated match to d1ai9a_
        complexed with nap, qlr
    6. Domains for 3qly:
      1. 1384985Domain d3qlya_: 3qly A: [184484]
        automated match to d1ai9a_
        complexed with 55v, nap
      2. 1384986Domain d3qlyb_: 3qly B: [184485]
        automated match to d1ai9a_
        complexed with 55v, nap
    7. Domains for 3qlz:
      1. 1384975Domain d3qlza_: 3qlz A: [184486]
        automated match to d1ai9a_
        complexed with mg, nap, qlz
      2. 1384976Domain d3qlzb_: 3qlz B: [184487]
        automated match to d1ai9a_
        complexed with mg, nap, qlz
  8. 1384987Coxiella burnetii [TaxId:777] [189790] (4 PDB entries)
    1. Domain for 3tq8:
    2. Domain for 3tq9:
    3. Domain for 3tqa:
    4. Domain for 3tqb:
  9. Cryptosporidium hominis [TaxId:237895] [231999] (2 PDB entries)
    1. Domains for 3dl5:
      1. 1384993Domain d3dl5a1: 3dl5 A:3-180 [232000]
        Other proteins in same PDB: d3dl5b2, d3dl5c2, d3dl5d2
        automated match to d2oipa1
      2. 1384994Domain d3dl5b1: 3dl5 B:3-180 [232002]
        Other proteins in same PDB: d3dl5b2, d3dl5c2, d3dl5d2
        automated match to d2oipa1
        complexed with cb3, dhf, ndp, ump; mutant
      3. 1384995Domain d3dl5c1: 3dl5 C:3-180 [232003]
        Other proteins in same PDB: d3dl5b2, d3dl5c2, d3dl5d2
        automated match to d2oipa1
        complexed with cb3, dhf, ndp, ump; mutant
      4. 1384996Domain d3dl5d1: 3dl5 D:3-180 [232001]
        Other proteins in same PDB: d3dl5b2, d3dl5c2, d3dl5d2
        automated match to d2oipa1
        complexed with cb3, dhf, ndp, ump; mutant
      5. 1384997Domain d3dl5e1: 3dl5 E:3-180 [232004]
        Other proteins in same PDB: d3dl5b2, d3dl5c2, d3dl5d2
        automated match to d2oipa1
    2. Domains for 3hj3:
      1. 1384998Domain d3hj3a1: 3hj3 A:3-180 [232478]
        Other proteins in same PDB: d3hj3a2
        automated match to d2oipa1
        complexed with cb3, mtx, ndp, ump; mutant
      2. 1384999Domain d3hj3b1: 3hj3 B:3-180 [236018]
        Other proteins in same PDB: d3hj3b2, d3hj3d2
        automated match to d3hj3a1
        complexed with cb3, mtx, ndp, ump; mutant
      3. 1385000Domain d3hj3c1: 3hj3 C:3-180 [236017]
        Other proteins in same PDB: d3hj3c2
        automated match to d3hj3a1
      4. 1385001Domain d3hj3d1: 3hj3 D:3-178 [236022]
        Other proteins in same PDB: d3hj3b2, d3hj3d2
        automated match to d3hj3a1
        complexed with cb3, mtx, ndp, ump; mutant
  10. 1385002Enterococcus faecalis [TaxId:226185] [237300] (2 PDB entries)
    1. Domain for 4m7u:
    2. Domain for 4m7v:
  11. 1385005Geobacillus stearothermophilus [TaxId:1422] [188185] (1 PDB entry)
  12. 1385008Moritella profunda [TaxId:111291] [189013] (3 PDB entries)
    1. Domains for 2zza:
      1. 1385013Domain d2zzaa_: 2zza A: [171612]
        automated match to d1dhja_
        complexed with 1pe, fol, nap
      2. 1385014Domain d2zzab_: 2zza B: [171613]
        automated match to d1dhja_
        complexed with 1pe, fol, nap
    2. Domains for 3ia4:
      1. 1385009Domain d3ia4a_: 3ia4 A: [178196]
        automated match to d1dhja_
        complexed with mtx, ndp
      2. 1385010Domain d3ia4b_: 3ia4 B: [178197]
        automated match to d1dhja_
        complexed with mtx, ndp
      3. 1385011Domain d3ia4c_: 3ia4 C: [178198]
        automated match to d1dhja_
        complexed with mtx, ndp
      4. 1385012Domain d3ia4d_: 3ia4 D: [178199]
        automated match to d1dhja_
        complexed with mtx, ndp
    3. Domains for 3ia5:
      1. 1385015Domain d3ia5a_: 3ia5 A: [178200]
        automated match to d1dhja_
        complexed with po4
      2. 1385016Domain d3ia5b_: 3ia5 B: [178201]
        automated match to d1dhja_
        complexed with po4
  13. 1385017Mycobacterium tuberculosis [TaxId:1773] [230073] (5 PDB entries)
    1. Domain for 4kl9:
    2. Domains for 4klx:
      1. 1385018Domain d4klxa_: 4klx A: [230075]
        automated match to d3d80a_
        complexed with atr, ete
      2. 1385019Domain d4klxb_: 4klx B: [230074]
        automated match to d3d80a_
        complexed with atr, ete
    3. Domains for 4km0:
      1. 1385020Domain d4km0a_: 4km0 A: [235184]
        automated match to d4klxa_
        complexed with atr, cp6
      2. 1385021Domain d4km0b_: 4km0 B: [235183]
        automated match to d4klxa_
        complexed with atr, cp6
    4. Domains for 4km2:
      1. 1385022Domain d4km2a_: 4km2 A: [235186]
        automated match to d4klxb_
        complexed with atr, top
      2. 1385023Domain d4km2b_: 4km2 B: [235185]
        automated match to d4klxb_
        complexed with atr, top
    5. Domains for 4kne:
      1. 1385025Domain d4knea_: 4kne A: [235187]
        automated match to d4klxb_
        complexed with 1cy, atr
      2. 1385026Domain d4kneb_: 4kne B: [235188]
        automated match to d4klxb_
        complexed with 1cy, atr
  14. 1385027Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [225827] (1 PDB entry)
  15. 1385030Staphylococcus aureus [TaxId:1280] [188848] (7 PDB entries)
    1. Domain for 2w9g:
    2. Domain for 2w9h:
    3. Domains for 2w9s:
      1. 1385034Domain d2w9sa_: 2w9s A: [169145]
        automated match to d1dhja_
        complexed with gol, ndp, top
      2. 1385035Domain d2w9sb_: 2w9s B: [169146]
        automated match to d1dhja_
        complexed with gol, ndp, top
      3. 1385036Domain d2w9sc_: 2w9s C: [169147]
        automated match to d1dhja_
        complexed with gol, ndp, top
      4. 1385037Domain d2w9sd_: 2w9s D: [169148]
        automated match to d1dhja_
        complexed with gol, ndp, top
      5. 1385038Domain d2w9se_: 2w9s E: [169149]
        automated match to d1dhja_
        complexed with gol, ndp, top
      6. 1385039Domain d2w9sf_: 2w9s F: [169150]
        automated match to d1dhja_
        complexed with gol, ndp, top
    4. Domains for 2w9t:
      1. 1385041Domain d2w9ta_: 2w9t A: [169151]
        automated match to d1dhja_
      2. 1385042Domain d2w9tb_: 2w9t B: [169152]
        automated match to d1dhja_
    5. Domain for 3i8a:
    6. Domain for 3srq:
    7. Domain for 3sru:
  16. 1385044Staphylococcus aureus [TaxId:273036] [188831] (12 PDB entries)
    1. Domain for 3f0b:
    2. Domain for 3f0q:
    3. Domain for 3f0s:
    4. Domain for 3f0u:
    5. Domain for 3f0v:
    6. Domain for 3f0x:
    7. Domain for 3fq0:
    8. Domains for 3fqc:
      1. 1385054Domain d3fqca_: 3fqc A: [175973]
        automated match to d1dhja_
        complexed with 55v, nap
      2. 1385055Domain d3fqcb_: 3fqc B: [175974]
        automated match to d1dhja_
        complexed with 55v, nap
    9. Domain for 3fqf:
    10. Domain for 3fqo:
    11. Domain for 3fqv:
    12. Domain for 3fqz:

More info for Protein automated matches from c.71.1.0: automated matches

Timeline for Protein automated matches from c.71.1.0: automated matches: