Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1287432Class b: All beta proteins [48724] (174 folds)
  3. 1304969Fold b.18: Galactose-binding domain-like [49784] (1 superfamily)
    sandwich; 9 strands in 2 sheets; jelly-roll
  4. 1304970Superfamily b.18.1: Galactose-binding domain-like [49785] (33 families) (S)
  5. 1305647Family b.18.1.0: automated matches [191481] (1 protein)
    not a true family
  6. 1305648Protein automated matches [190770] (10 species)
    not a true protein

Species:

  1. 1305649Clostridium cellulolyticum [TaxId:1521] [189080] (1 PDB entry)
  2. 1305651Clostridium josui [TaxId:1499] [225844] (3 PDB entries)
    1. Domain for 3acf:
    2. Domain for 3acg:
    3. Domain for 3ach:
  3. 1305655Cow (Bos taurus) [TaxId:9913] [187995] (2 PDB entries)
    1. Domains for 2pqs:
      1. 1305657Domain d2pqsa_: 2pqs A: [167246]
        automated match to d1czsa_
      2. 1305658Domain d2pqsb_: 2pqs B: [167247]
        automated match to d1czsa_
      3. 1305659Domain d2pqsc_: 2pqs C: [167248]
        automated match to d1czsa_
      4. 1305660Domain d2pqsd_: 2pqs D: [167249]
        automated match to d1czsa_
    2. Domain for 3bn6:
  4. 1305661Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [189684] (2 PDB entries)
    1. Domains for 2yc2:
      1. 1305662Domain d2yc2a_: 2yc2 A: [170736]
        automated match to d1tvga_
        complexed with ca
      2. 1305663Domain d2yc2b_: 2yc2 B: [170737]
        automated match to d1tvga_
        complexed with ca
    2. Domains for 2yc4:
      1. 1305664Domain d2yc4a_: 2yc4 A: [170738]
        automated match to d1tvga_
        complexed with ca, cl, mg
      2. 1305665Domain d2yc4b_: 2yc4 B: [170739]
        automated match to d1tvga_
        complexed with ca, cl, mg
  5. 1305666Human (Homo sapiens) [TaxId:9606] [188939] (7 PDB entries)
    1. Domain for 2wuh:
    2. Domain for 3c8x:
    3. Domain for 3czu:
    4. Domains for 3hei:
      1. 1305669Domain d3heia_: 3hei A: [177430]
        Other proteins in same PDB: d3heib_, d3heid_, d3heif_, d3heih_, d3heij_, d3heil_, d3hein_, d3heip_
        automated match to d1kgya_
      2. 1305670Domain d3heic_: 3hei C: [177432]
        Other proteins in same PDB: d3heib_, d3heid_, d3heif_, d3heih_, d3heij_, d3heil_, d3hein_, d3heip_
        automated match to d1kgya_
      3. 1305671Domain d3heie_: 3hei E: [177434]
        Other proteins in same PDB: d3heib_, d3heid_, d3heif_, d3heih_, d3heij_, d3heil_, d3hein_, d3heip_
        automated match to d1kgya_
      4. 1305672Domain d3heig_: 3hei G: [177436]
        Other proteins in same PDB: d3heib_, d3heid_, d3heif_, d3heih_, d3heij_, d3heil_, d3hein_, d3heip_
        automated match to d1kgya_
      5. 1305673Domain d3heii_: 3hei I: [177438]
        Other proteins in same PDB: d3heib_, d3heid_, d3heif_, d3heih_, d3heij_, d3heil_, d3hein_, d3heip_
        automated match to d1kgya_
      6. 1305674Domain d3heik_: 3hei K: [177440]
        Other proteins in same PDB: d3heib_, d3heid_, d3heif_, d3heih_, d3heij_, d3heil_, d3hein_, d3heip_
        automated match to d1kgya_
      7. 1305675Domain d3heim_: 3hei M: [177442]
        Other proteins in same PDB: d3heib_, d3heid_, d3heif_, d3heih_, d3heij_, d3heil_, d3hein_, d3heip_
        automated match to d1kgya_
      8. 1305676Domain d3heio_: 3hei O: [177444]
        Other proteins in same PDB: d3heib_, d3heid_, d3heif_, d3heih_, d3heij_, d3heil_, d3hein_, d3heip_
        automated match to d1kgya_
    5. Domains for 3hpn:
      1. 1305682Domain d3hpna_: 3hpn A: [177762]
        automated match to d1kgya_
      2. 1305683Domain d3hpnb_: 3hpn B: [177763]
        automated match to d1kgya_
      3. 1305684Domain d3hpnc_: 3hpn C: [177764]
        automated match to d1kgya_
      4. 1305685Domain d3hpnd_: 3hpn D: [177765]
        automated match to d1kgya_
      5. 1305686Domain d3hpne_: 3hpn E: [177766]
        automated match to d1kgya_
      6. 1305687Domain d3hpnf_: 3hpn F: [177767]
        automated match to d1kgya_
    6. Domain for 3skj:
    7. Domains for 4omc:
      1. 1305677Domain d4omca2: 4omc A:443-574 [238479]
        Other proteins in same PDB: d4omca1, d4omcc1, d4omcd1
        automated match to d1p8ja1
        complexed with ca, fmt, na
      2. 1305678Domain d4omcc2: 4omc C:443-574 [238477]
        Other proteins in same PDB: d4omca1, d4omcc1, d4omcd1
        automated match to d1p8ja1
        complexed with ca, fmt, na
      3. 1305679Domain d4omcd2: 4omc D:443-574 [238476]
        Other proteins in same PDB: d4omca1, d4omcc1, d4omcd1
        automated match to d1p8ja1
        complexed with ca, fmt, na
  6. 1305688Piromyces equi [TaxId:99929] [188072] (1 PDB entry)
  7. 1305690Rhodococcus sp. [TaxId:104109] [232531] (6 PDB entries)
    1. Domain for 3i2f:
    2. Domain for 3i2g:
    3. Domain for 3i2h:
    4. Domain for 3i2i:
    5. Domain for 3i2j:
    6. Domain for 3pui:
  8. 1305697Rhodococcus sp. [TaxId:51612] [232585] (1 PDB entry)
  9. 1305699Streptococcus mitis [TaxId:28037] [189586] (6 PDB entries)
    1. Domain for 3le0:
    2. Domain for 3leg:
    3. Domain for 3lei:
    4. Domain for 3lek:
    5. Domain for 4gwi:
    6. Domain for 4gwj:
  10. 1305706Streptococcus pneumoniae [TaxId:170187] [193202] (6 PDB entries)
    1. Domains for 2j1r:
      1. 1305711Domain d2j1ra_: 2j1r A: [204922]
        automated match to d2j1tb_
        complexed with ca
      2. 1305712Domain d2j1rb_: 2j1r B: [204923]
        automated match to d2j1tb_
        complexed with ca
    2. Domains for 2j1s:
      1. 1305709Domain d2j1sa_: 2j1s A: [204924]
        automated match to d2j1tb_
        complexed with ca, ful
      2. 1305710Domain d2j1sb_: 2j1s B: [204925]
        automated match to d2j1tb_
        complexed with ca, ful
    3. Domains for 2j1t:
      1. 1305713Domain d2j1ta_: 2j1t A: [198084]
        automated match to d2j1tb_
        complexed with ca, fuc
      2. 1305714Domain d2j1tb_: 2j1t B: [193859]
        automated match to d3le0a_
        complexed with ca, fuc
    4. Domains for 2j1u:
      1. 1305715Domain d2j1ua_: 2j1u A: [204926]
        automated match to d2j1tb_
        complexed with ca
      2. 1305716Domain d2j1ub_: 2j1u B: [204927]
        automated match to d2j1tb_
        complexed with ca
    5. Domains for 2j1v:
      1. 1305707Domain d2j1va_: 2j1v A: [204928]
        automated match to d2j1tb_
        complexed with ca, nag
      2. 1305708Domain d2j1vb_: 2j1v B: [204929]
        automated match to d2j1tb_
        complexed with ca, nag
    6. Domain for 2j22:

More info for Protein automated matches from b.18.1.0: automated matches

Timeline for Protein automated matches from b.18.1.0: automated matches: