SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2200942Fold d.151: DNase I-like [56218] (1 superfamily)
    contains beta-sandwich; duplication of alpha+beta motif
  4. 2200943Superfamily d.151.1: DNase I-like [56219] (4 families) (S)
  5. 2201053Family d.151.1.0: automated matches [191468] (1 protein)
    not a true family
  6. 2201054Protein automated matches [190734] (12 species)
    not a true protein

Species:

  1. 2201055Archaeoglobus fulgidus [TaxId:2234] [188717] (1 PDB entry)
  2. 2201058Methanothermobacter thermautotrophicus [TaxId:187420] [229730] (15 PDB entries)
    1. Domain for 3fzi:
    2. Domains for 3g00:
      1. 2201061Domain d3g00a1: 3g00 A:2-257 [232217]
        Other proteins in same PDB: d3g00a2
        automated match to d2jc5a_
        protein/DNA complex; complexed with gol, mpd, po4
      2. 2201062Domain d3g00b_: 3g00 B: [232218]
        Other proteins in same PDB: d3g00a2
        automated match to d2jc5a_
        protein/DNA complex; complexed with gol, mpd, po4
    3. Domain for 3g0a:
    4. Domains for 3g0r:
      1. 2201069Domain d3g0ra_: 3g0r A: [236707]
        automated match to d3g00a_
        protein/DNA complex; complexed with gol, na, pg4
      2. 2201070Domain d3g0rb_: 3g0r B: [236706]
        automated match to d3g00a_
        protein/DNA complex; complexed with gol, na, pg4
    5. Domains for 3g1k:
      1. 2201075Domain d3g1ka_: 3g1k A: [246228]
        automated match to d3g4tb_
        complexed with mg
      2. 2201076Domain d3g1kb_: 3g1k B: [246229]
        automated match to d3g4tb_
        complexed with mg
    6. Domains for 3g2c:
      1. 2201071Domain d3g2ca1: 3g2c A:2-257 [236709]
        Other proteins in same PDB: d3g2ca2
        automated match to d3fzia_
        protein/DNA complex; complexed with gol, mg, po4
      2. 2201072Domain d3g2cb_: 3g2c B: [236715]
        Other proteins in same PDB: d3g2ca2
        automated match to d3fzia_
        protein/DNA complex; complexed with gol, mg, po4
    7. Domains for 3g2d:
      1. 2201073Domain d3g2da_: 3g2d A: [236710]
        automated match to d3g00a_
        protein/DNA complex; complexed with gol, pg4, po4
      2. 2201074Domain d3g2db_: 3g2d B: [236708]
        automated match to d3g00a_
        protein/DNA complex; complexed with gol, pg4, po4
    8. Domain for 3g38:
    9. Domains for 3g3c:
      1. 2201081Domain d3g3ca_: 3g3c A: [246233]
        Other proteins in same PDB: d3g3cb2
        automated match to d3g4tb_
        protein/DNA complex; complexed with mg, mrd, po4
      2. 2201082Domain d3g3cb1: 3g3c B:2-257 [246234]
        Other proteins in same PDB: d3g3cb2
        automated match to d3g4tb_
        protein/DNA complex; complexed with mg, mrd, po4
    10. Domains for 3g3y:
      1. 2201077Domain d3g3ya1: 3g3y A:2-257 [236711]
        Other proteins in same PDB: d3g3ya2
        automated match to d3fzia_
        protein/DNA complex; complexed with gol, mg
      2. 2201078Domain d3g3yb_: 3g3y B: [236714]
        Other proteins in same PDB: d3g3ya2
        automated match to d3fzia_
        protein/DNA complex; complexed with gol, mg
    11. Domains for 3g4t:
      1. 2201079Domain d3g4ta_: 3g4t A: [236716]
        automated match to d3fzia_
        protein/DNA complex; complexed with mg, po4
      2. 2201080Domain d3g4tb_: 3g4t B: [236712]
        automated match to d3fzia_
        protein/DNA complex; complexed with mg, po4
    12. Domain for 3g91:
    13. Domains for 3ga6:
      1. 2201064Domain d3ga6a_: 3ga6 A: [236717]
        automated match to d3g00a_
        protein/DNA complex; complexed with gol, na, po4
      2. 2201065Domain d3ga6b_: 3ga6 B: [236713]
        automated match to d3g00a_
        protein/DNA complex; complexed with gol, na, po4
    14. Domain for 3w2x:
    15. Domains for 3w2y:
      1. 2201066Domain d3w2ya_: 3w2y A: [229731]
        automated match to d1vyba_
        complexed with fmt, mg, peg; mutant
      2. 2201067Domain d3w2yd_: 3w2y D: [233921]
        automated match to d3w2ya_
        complexed with fmt, mg, peg; mutant
  3. 2201084Neisseria meningitidis [TaxId:487] [187907] (2 PDB entries)
    1. Domain for 2jc4:
    2. Domain for 2jc5:
  4. 2201087Pseudomonas aeruginosa [TaxId:287] [226583] (2 PDB entries)
    1. Domain for 4f1r:
    2. Domain for 4jg3:
  5. 2201090Salmonella enterica [TaxId:90370] [226727] (1 PDB entry)
  6. 2201092Silkworm (Bombyx mori) [TaxId:7091] [225293] (1 PDB entry)
  7. 2201094Staphylococcus aureus [TaxId:561307] [225915] (4 PDB entries)
    1. Domains for 3i41:
      1. 2201097Domain d3i41a_: 3i41 A: [211459]
        automated match to d1zwxa1
        mutant
      2. 2201098Domain d3i41b_: 3i41 B: [211460]
        automated match to d1zwxa1
        mutant
    2. Domains for 3i46:
      1. 2201099Domain d3i46a_: 3i46 A: [211462]
        automated match to d1zwxa1
        complexed with ca, cl; mutant
      2. 2201100Domain d3i46b_: 3i46 B: [211463]
        automated match to d1zwxa1
        complexed with ca, cl; mutant
    3. Domains for 3i48:
      1. 2201095Domain d3i48a_: 3i48 A: [211464]
        automated match to d1zwxa1
        complexed with mg, po4; mutant
      2. 2201096Domain d3i48b_: 3i48 B: [211465]
        automated match to d1zwxa1
        complexed with mg, po4; mutant
    4. Domains for 3i5v:
      1. 2201101Domain d3i5va_: 3i5v A: [211496]
        automated match to d1zwxa1
        complexed with dga
      2. 2201102Domain d3i5vb_: 3i5v B: [211497]
        automated match to d1zwxa1
        complexed with dga
      3. 2201103Domain d3i5vc_: 3i5v C: [211498]
        automated match to d1zwxa1
        complexed with dga
      4. 2201104Domain d3i5vd_: 3i5v D: [211499]
        automated match to d1zwxa1
        complexed with dga
  8. 2201105Streptomyces griseocarneus [TaxId:51201] [256476] (1 PDB entry)
  9. 2268214Pseudomonas sp. [TaxId:1206777] [311520] (1 PDB entry)
  10. 2273048Methanosarcina mazei [TaxId:192952] [316349] (1 PDB entry)
  11. 2275944Bacillus subtilis [TaxId:224308] [319245] (1 PDB entry)
  12. 2283128Sulfolobus islandicus [TaxId:930945] [326429] (1 PDB entry)

More info for Protein automated matches from d.151.1.0: automated matches

Timeline for Protein automated matches from d.151.1.0: automated matches: