Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2528139Fold d.86: eIF4e-like [55417] (1 superfamily)
    beta(2)-alpha-beta(2)-alpha-beta(2)-alpha-beta-2; 2 layers: alpha/beta; antiparallel sheet: 21356478
  4. 2528140Superfamily d.86.1: eIF4e-like [55418] (3 families) (S)
  5. 2528226Family d.86.1.0: automated matches [191459] (1 protein)
    not a true family
  6. 2528227Protein automated matches [190708] (10 species)
    not a true protein

Species:

  1. 2528228Blood fluke (Schistosoma mansoni) [TaxId:6183] [188995] (2 PDB entries)
    1. Domain for 3hxg:
    2. Domain for 3hxi:
  2. 2528231Cucumis melo [TaxId:3656] [338181] (3 PDB entries)
    1. Domain for 5me5:
    2. Domains for 5me6:
      1. 2528237Domain d5me6a1: 5me6 A:53-235 [338210]
        Other proteins in same PDB: d5me6a2
        automated match to d2wmca_
        complexed with m7g
      2. 2528238Domain d5me6b_: 5me6 B: [338223]
        Other proteins in same PDB: d5me6a2
        automated match to d2wmca_
        complexed with m7g
      3. 2528239Domain d5me6c_: 5me6 C: [338233]
        Other proteins in same PDB: d5me6a2
        automated match to d2wmca_
        complexed with m7g
      4. 2528240Domain d5me6d_: 5me6 D: [338227]
        Other proteins in same PDB: d5me6a2
        automated match to d2wmca_
        complexed with m7g
    3. Domains for 5me7:
      1. 2528233Domain d5me7a1: 5me7 A:53-235 [338190]
        Other proteins in same PDB: d5me7a2, d5me7c2, d5me7d2
        automated match to d2wmca_
        complexed with gol
      2. 2528234Domain d5me7b_: 5me7 B: [338182]
        Other proteins in same PDB: d5me7a2, d5me7c2, d5me7d2
        automated match to d2wmca_
        complexed with gol
      3. 2528235Domain d5me7c1: 5me7 C:53-235 [338188]
        Other proteins in same PDB: d5me7a2, d5me7c2, d5me7d2
        automated match to d2wmca_
        complexed with gol
      4. 2528236Domain d5me7d1: 5me7 D:53-235 [338230]
        Other proteins in same PDB: d5me7a2, d5me7c2, d5me7d2
        automated match to d2wmca_
        complexed with gol
  3. 2528241Fruit fly (Drosophila melanogaster) [TaxId:7227] [256194] (8 PDB entries)
    1. Domains for 4axg:
      1. 2528252Domain d4axga_: 4axg A: [251165]
        automated match to d1ipca_
        protein/RNA complex
      2. 2528253Domain d4axgb_: 4axg B: [251166]
        automated match to d1ipca_
        protein/RNA complex
    2. Domain for 4ue8:
    3. Domain for 4ue9:
    4. Domains for 4uec:
      1. 2528254Domain d4ueca1: 4uec A:69-236 [269406]
        Other proteins in same PDB: d4ueca2, d4uecc2
        automated match to d2v8ye1
        complexed with mgt
      2. 2528255Domain d4uecc1: 4uec C:69-236 [269408]
        Other proteins in same PDB: d4ueca2, d4uecc2
        automated match to d2v8ye1
        complexed with mgt
    5. Domain for 5abu:
    6. Domains for 5abv:
      1. 2528244Domain d5abva1: 5abv A:69-248 [276482]
        Other proteins in same PDB: d5abva2, d5abvc2, d5abve2, d5abvg2
        automated match to d2v8ye1
      2. 2528245Domain d5abvc1: 5abv C:69-248 [276481]
        Other proteins in same PDB: d5abva2, d5abvc2, d5abve2, d5abvg2
        automated match to d2v8ye1
      3. 2528246Domain d5abve1: 5abv E:69-248 [276479]
        Other proteins in same PDB: d5abva2, d5abvc2, d5abve2, d5abvg2
        automated match to d2v8ye1
      4. 2528247Domain d5abvg1: 5abv G:69-248 [276480]
        Other proteins in same PDB: d5abva2, d5abvc2, d5abve2, d5abvg2
        automated match to d2v8ye1
    7. Domains for 5t47:
      1. 2528250Domain d5t47a1: 5t47 A:69-248 [324541]
        Other proteins in same PDB: d5t47a2, d5t47c2
        automated match to d1ipca_
        complexed with gol
      2. 2528251Domain d5t47c1: 5t47 C:69-248 [324588]
        Other proteins in same PDB: d5t47a2, d5t47c2
        automated match to d1ipca_
        complexed with gol
    8. Domain for 5t48:
  4. 2528256Human (Homo sapiens) [TaxId:9606] [187914] (8 PDB entries)
    1. Domain for 2jgb:
    2. Domain for 2jgc:
    3. Domain for 4ued:
    4. Domains for 5nvk:
      1. 2528266Domain d5nvka_: 5nvk A: [337040]
        Other proteins in same PDB: d5nvkg2
        automated match to d2jgba_
      2. 2528267Domain d5nvkc_: 5nvk C: [337020]
        Other proteins in same PDB: d5nvkg2
        automated match to d2jgba_
      3. 2528268Domain d5nvke_: 5nvk E: [337069]
        Other proteins in same PDB: d5nvkg2
        automated match to d2jgba_
      4. 2528269Domain d5nvkg1: 5nvk G:52-233 [337043]
        Other proteins in same PDB: d5nvkg2
        automated match to d2jgba_
    5. Domains for 5nvl:
      1. 2528264Domain d5nvla1: 5nvl A:52-218 [337057]
        Other proteins in same PDB: d5nvla2, d5nvlc2
        automated match to d2jgba_
      2. 2528265Domain d5nvlc1: 5nvl C:52-218 [337004]
        Other proteins in same PDB: d5nvla2, d5nvlc2
        automated match to d2jgba_
    6. Domains for 5nvm:
      1. 2528262Domain d5nvma1: 5nvm A:52-221 [336987]
        Other proteins in same PDB: d5nvma2, d5nvmc2
        automated match to d2jgba_
        complexed with po4
      2. 2528263Domain d5nvmc1: 5nvm C:52-219 [337013]
        Other proteins in same PDB: d5nvma2, d5nvmc2
        automated match to d2jgba_
        complexed with po4
    7. Domains for 5nvn:
      1. 2528259Domain d5nvna1: 5nvn A:52-224 [337016]
        Other proteins in same PDB: d5nvna2, d5nvnc2
        automated match to d2jgba_
        complexed with fmt
      2. 2528260Domain d5nvnc1: 5nvn C:52-224 [336998]
        Other proteins in same PDB: d5nvna2, d5nvnc2
        automated match to d2jgba_
        complexed with fmt
    8. Domain for 5xln:
  5. 2528270Nematode (Caenorhabditis elegans) [TaxId:6239] [276473] (2 PDB entries)
    1. Domain for 5abx:
    2. Domains for 5aby:
      1. 2528272Domain d5abya_: 5aby A: [276475]
        Other proteins in same PDB: d5abyc2
        automated match to d1l8bb_
        complexed with gol, mg
      2. 2528273Domain d5abyc1: 5aby C:30-215 [276474]
        Other proteins in same PDB: d5abyc2
        automated match to d1l8bb_
        complexed with gol, mg
      3. 2528274Domain d5abye_: 5aby E: [276476]
        Other proteins in same PDB: d5abyc2
        automated match to d1l8bb_
        complexed with gol, mg
  6. 2528275Pea (Pisum sativum) [TaxId:3888] [189457] (1 PDB entry)
  7. 2528284Pig roundworm (Ascaris suum) [TaxId:6253] [189748] (2 PDB entries)
    1. Domain for 3m93:
    2. Domain for 3m94:
  8. 2528287Wheat (Triticum aestivum) [TaxId:4565] [187854] (2 PDB entries)
    1. Domains for 2idr:
      1. 2528288Domain d2idra_: 2idr A: [165513]
        automated match to d2v8we1
      2. 2528289Domain d2idrb_: 2idr B: [165514]
        automated match to d2v8we1
    2. Domain for 2idv:
  9. 3053833Saccharomyces cerevisiae [TaxId:559292] [353895] (2 PDB entries)
    1. Domains for 6fc2:
      1. 3053834Domain d6fc2c_: 6fc2 C: [353896]
        Other proteins in same PDB: d6fc2a2
        automated match to d3m94a_
        complexed with ca
      2. 3053844Domain d6fc2a1: 6fc2 A:35-213 [353906]
        Other proteins in same PDB: d6fc2a2
        automated match to d3m94a_
        complexed with ca
    2. Domain for 6fc3:
  10. 3053857Chaetomium thermophilum [TaxId:759272] [353919] (2 PDB entries)
    1. Domain for 6fbz:
    2. Domain for 6fc0:

More info for Protein automated matches from d.86.1.0: automated matches

Timeline for Protein automated matches from d.86.1.0: automated matches: