Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1378488Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
    core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest
  4. 1378489Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (58 families) (S)
  5. 1379620Family c.66.1.0: automated matches [191451] (1 protein)
    not a true family
  6. 1379621Protein automated matches [190689] (42 species)
    not a true protein

Species:

  1. 1379622Aeropyrum pernix [TaxId:56636] [193600] (1 PDB entry)
  2. 1379625Anaplasma phagocytophilum [TaxId:212042] [236090] (2 PDB entries)
    1. Domains for 4oa5:
      1. 1379628Domain d4oa5a_: 4oa5 A: [237391]
        automated match to d4oa8a_
        complexed with edo, gol, iod, sah
      2. 1379629Domain d4oa5b_: 4oa5 B: [237394]
        automated match to d4oa8a_
        complexed with edo, gol, iod, sah
      3. 1379630Domain d4oa5c_: 4oa5 C: [237395]
        automated match to d4oa8a_
        complexed with edo, gol, iod, sah
      4. 1379631Domain d4oa5d_: 4oa5 D: [237390]
        automated match to d4oa8a_
        complexed with edo, gol, iod, sah
      5. 1379632Domain d4oa5e_: 4oa5 E: [237398]
        automated match to d4oa8a_
        complexed with edo, gol, iod, sah
      6. 1379633Domain d4oa5f_: 4oa5 F: [237396]
        automated match to d4oa8a_
        complexed with edo, gol, iod, sah
    2. Domains for 4oa8:
      1. 1379626Domain d4oa8a_: 4oa8 A: [236091]
        automated match to d3c3pa_
        complexed with edo, na
      2. 1379627Domain d4oa8b_: 4oa8 B: [236092]
        automated match to d3c3pa_
        complexed with edo, na
  3. 1379634Aquifex aeolicus [TaxId:224324] [188415] (4 PDB entries)
    1. Domains for 2yvl:
      1. 1379637Domain d2yvla_: 2yvl A: [170884]
        automated match to d1o54a_
        complexed with sam
      2. 1379638Domain d2yvlb_: 2yvl B: [170885]
        automated match to d1o54a_
        complexed with sam
      3. 1379639Domain d2yvlc_: 2yvl C: [170886]
        automated match to d1o54a_
        complexed with sam
      4. 1379640Domain d2yvld_: 2yvl D: [170887]
        automated match to d1o54a_
        complexed with sam
    2. Domain for 3ftc:
    3. Domain for 3ftd:
    4. Domain for 3ftf:
  4. 1379642Aquifex aeolicus [TaxId:63363] [196336] (1 PDB entry)
  5. 1379644Bacillus halodurans [TaxId:272558] [225075] (1 PDB entry)
  6. 1379647Burkholderia pseudomallei [TaxId:28450] [233823] (1 PDB entry)
  7. 1379649Coffea canephora [TaxId:49390] [188542] (2 PDB entries)
    1. Domain for 2efj:
    2. Domains for 2eg5:
      1. 1379651Domain d2eg5a_: 2eg5 A: [163991]
        automated match to d1m6ex_
        complexed with sah, xts
      2. 1379652Domain d2eg5c_: 2eg5 C: [163992]
        automated match to d1m6ex_
        complexed with sah, xts
      3. 1379653Domain d2eg5e_: 2eg5 E: [163993]
        automated match to d1m6ex_
        complexed with sah, xts
      4. 1379654Domain d2eg5g_: 2eg5 G: [163994]
        automated match to d1m6ex_
        complexed with sah, xts
  8. 1379655Coxiella burnetii [TaxId:777] [189725] (2 PDB entries)
    1. Domains for 3tqs:
      1. 1379656Domain d3tqsa_: 3tqs A: [185914]
        automated match to d1qyra_
      2. 1379657Domain d3tqsb_: 3tqs B: [185915]
        automated match to d1qyra_
      3. 1379658Domain d3tqsc_: 3tqs C: [185916]
        automated match to d1qyra_
      4. 1379659Domain d3tqsd_: 3tqs D: [185917]
        automated match to d1qyra_
    2. Domain for 3tr6:
  9. 1379661Entamoeba (Entamoeba histolytica) [TaxId:5759] [195622] (1 PDB entry)
  10. 1379663Escherichia coli [TaxId:83333] [196426] (5 PDB entries)
    1. Domains for 3lbf:
      1. 1379670Domain d3lbfa_: 3lbf A: [199725]
        automated match to d3lbfd_
        complexed with gol, po4, sah
      2. 1379671Domain d3lbfb_: 3lbf B: [199726]
        automated match to d3lbfd_
        complexed with gol, po4, sah
      3. 1379672Domain d3lbfc_: 3lbf C: [199727]
        automated match to d3lbfd_
        complexed with gol, po4, sah
      4. 1379673Domain d3lbfd_: 3lbf D: [196427]
        automated match to d2yxeb_
        complexed with gol, po4, sah
    2. Domains for 3o4f:
      1. 1379674Domain d3o4fa_: 3o4f A: [214141]
        automated match to d2o06a_
        complexed with so4
      2. 1379675Domain d3o4fb_: 3o4f B: [214142]
        automated match to d2o06a_
        complexed with so4
      3. 1379676Domain d3o4fc_: 3o4f C: [214143]
        automated match to d2o06a_
        complexed with so4
      4. 1379677Domain d3o4fd_: 3o4f D: [214144]
        automated match to d2o06a_
        complexed with so4
      5. 1379678Domain d3o4fe_: 3o4f E: [214145]
        automated match to d2o06a_
        complexed with so4
      6. 1379679Domain d3o4ff_: 3o4f F: [214146]
        automated match to d2o06a_
        complexed with so4
      7. 1379680Domain d3o4fg_: 3o4f G: [214147]
        automated match to d2o06a_
        complexed with so4
      8. 1379681Domain d3o4fh_: 3o4f H: [214148]
        automated match to d2o06a_
        complexed with so4
    3. Domains for 4blu:
      1. 1379664Domain d4blua_: 4blu A: [219514]
        automated match to d2oo3a1
        complexed with edo, gol, peg, so4, trs
      2. 1379665Domain d4blub_: 4blu B: [219515]
        automated match to d2oo3a1
        complexed with edo, gol, peg, so4, trs
    4. Domains for 4blv:
      1. 1379668Domain d4blva_: 4blv A: [219516]
        automated match to d2oo3a1
        protein/RNA complex; complexed with edo, gol, peg, sam, so4
      2. 1379669Domain d4blvb_: 4blv B: [219517]
        automated match to d2oo3a1
        protein/RNA complex; complexed with edo, gol, peg, sam, so4
    5. Domains for 4blw:
      1. 1379666Domain d4blwa_: 4blw A: [219518]
        automated match to d2oo3a1
        protein/RNA complex; complexed with amp, edo, gol, na, sah, so4
      2. 1379667Domain d4blwb_: 4blw B: [219519]
        automated match to d2oo3a1
        protein/RNA complex; complexed with amp, edo, gol, na, sah, so4
  11. 1379682Exiguobacterium sibiricum [TaxId:262543] [188449] (1 PDB entry)
  12. 1379687Fall armyworm (Spodoptera frugiperda) [TaxId:7108] [194322] (1 PDB entry)
  13. 1379692Geobacter metallireducens [TaxId:269799] [188557] (1 PDB entry)
  14. 1379701Geobacter sulfurreducens [TaxId:243231] [188338] (1 PDB entry)
  15. 1379705Helicobacter pylori [TaxId:85962] [225261] (2 PDB entries)
    1. Domains for 2cmg:
      1. 1379706Domain d2cmga_: 2cmg A: [203808]
        automated match to d1xj5b_
      2. 1379707Domain d2cmgb_: 2cmg B: [203809]
        automated match to d1xj5b_
    2. Domains for 2cmh:
      1. 1379708Domain d2cmha_: 2cmh A: [203810]
        automated match to d1xj5b_
      2. 1379709Domain d2cmhb_: 2cmh B: [203811]
        automated match to d1xj5b_
      3. 1379710Domain d2cmhc_: 2cmh C: [203812]
        automated match to d1xj5b_
  16. 1379711Human (Homo sapiens) [TaxId:9606] [187871] (6 PDB entries)
    1. Domains for 2iip:
      1. 1379723Domain d2iipa_: 2iip A: [204792]
        automated match to d2i62b_
        complexed with sah
      2. 1379724Domain d2iipb_: 2iip B: [204793]
        automated match to d2i62b_
        complexed with sah
      3. 1379725Domain d2iipc_: 2iip C: [204794]
        automated match to d2i62b_
        complexed with sah
      4. 1379726Domain d2iipd_: 2iip D: [204795]
        automated match to d2i62b_
        complexed with sah
    2. Domain for 2ipx:
    3. Domains for 2nyu:
      1. 1379721Domain d2nyua_: 2nyu A: [166459]
        automated match to d1eiza_
        protein/RNA complex; complexed with sam
      2. 1379722Domain d2nyub_: 2nyu B: [166460]
        automated match to d1eiza_
        protein/RNA complex; complexed with sam
    4. Domains for 3iei:
      1. 1379712Domain d3ieia_: 3iei A: [211605]
        automated match to d1rjdb_
        complexed with gol, mes, sah
      2. 1379713Domain d3ieib_: 3iei B: [211606]
        automated match to d1rjdb_
        complexed with gol, mes, sah
      3. 1379714Domain d3ieic_: 3iei C: [211607]
        automated match to d1rjdb_
        complexed with gol, mes, sah
      4. 1379715Domain d3ieid_: 3iei D: [211608]
        automated match to d1rjdb_
        complexed with gol, mes, sah
      5. 1379716Domain d3ieie_: 3iei E: [211609]
        automated match to d1rjdb_
        complexed with gol, mes, sah
      6. 1379717Domain d3ieif_: 3iei F: [211610]
        automated match to d1rjdb_
        complexed with gol, mes, sah
      7. 1379718Domain d3ieig_: 3iei G: [211611]
        automated match to d1rjdb_
        complexed with gol, mes, sah
      8. 1379719Domain d3ieih_: 3iei H: [211612]
        automated match to d1rjdb_
        complexed with gol, mes, sah
    5. Domain for 3p71:
    6. Domains for 3rod:
      1. 1379728Domain d3roda_: 3rod A: [215951]
        automated match to d2i62b_
        complexed with nca, sah
      2. 1379729Domain d3rodb_: 3rod B: [215952]
        automated match to d2i62b_
        complexed with nca, sah
      3. 1379730Domain d3rodc_: 3rod C: [215953]
        automated match to d2i62b_
        complexed with nca, sah
      4. 1379731Domain d3rodd_: 3rod D: [215954]
        automated match to d2i62b_
        complexed with nca, sah
  17. 1379732Legionella pneumophila [TaxId:272624] [226103] (1 PDB entry)
  18. 1379735Leptospira interrogans [TaxId:173] [187817] (1 PDB entry)
  19. 1379739Linum nodiflorum [TaxId:407264] [234382] (1 PDB entry)
  20. 1379741Lolium perenne [TaxId:4522] [226054] (3 PDB entries)
    1. Domain for 3p9c:
    2. Domains for 3p9i:
      1. 1379743Domain d3p9ia2: 3p9i A:117-360 [214715]
        Other proteins in same PDB: d3p9ia1, d3p9ib1, d3p9ic1, d3p9id1
        automated match to d1kyzc2
        complexed with bme, sah, sny
      2. 1379744Domain d3p9ib2: 3p9i B:117-360 [214717]
        Other proteins in same PDB: d3p9ia1, d3p9ib1, d3p9ic1, d3p9id1
        automated match to d1kyzc2
        complexed with bme, sah, sny
      3. 1379745Domain d3p9ic2: 3p9i C:117-360 [214719]
        Other proteins in same PDB: d3p9ia1, d3p9ib1, d3p9ic1, d3p9id1
        automated match to d1kyzc2
        complexed with bme, sah, sny
      4. 1379746Domain d3p9id2: 3p9i D:117-360 [214721]
        Other proteins in same PDB: d3p9ia1, d3p9ib1, d3p9ic1, d3p9id1
        automated match to d1kyzc2
        complexed with bme, sah, sny
    3. Domains for 3p9k:
      1. 1379747Domain d3p9ka2: 3p9k A:117-360 [214723]
        Other proteins in same PDB: d3p9ka1, d3p9kb1, d3p9kc1, d3p9kd1
        automated match to d1kyzc2
        complexed with ciy, sah
      2. 1379748Domain d3p9kb2: 3p9k B:117-360 [214725]
        Other proteins in same PDB: d3p9ka1, d3p9kb1, d3p9kc1, d3p9kd1
        automated match to d1kyzc2
        complexed with ciy, sah
      3. 1379749Domain d3p9kc2: 3p9k C:117-360 [214727]
        Other proteins in same PDB: d3p9ka1, d3p9kb1, d3p9kc1, d3p9kd1
        automated match to d1kyzc2
        complexed with ciy, sah
      4. 1379750Domain d3p9kd2: 3p9k D:117-360 [214729]
        Other proteins in same PDB: d3p9ka1, d3p9kb1, d3p9kc1, d3p9kd1
        automated match to d1kyzc2
        complexed with ciy, sah
  21. 1379751Malaria parasite (Plasmodium falciparum) [TaxId:5833] [225077] (1 PDB entry)
  22. 1379754Meaban virus [TaxId:35279] [188819] (1 PDB entry)
  23. 1379759Medicago truncatula [TaxId:3880] [225108] (4 PDB entries)
    1. Domain for 1zg3:
    2. Domain for 1zga:
    3. Domain for 1zgj:
    4. Domain for 1zhf:
  24. 1379764Methanocaldococcus jannaschii [TaxId:2190] [225914] (2 PDB entries)
    1. Domains for 3a4t:
      1. 1379766Domain d3a4ta_: 3a4t A: [208105]
        automated match to d2b9ea1
        complexed with sfg
      2. 1379767Domain d3a4tb_: 3a4t B: [208106]
        automated match to d2b9ea1
        complexed with sfg
    2. Domain for 3ajd:
  25. 1379768Methanocaldococcus jannaschii [TaxId:243232] [188256] (2 PDB entries)
    1. Domains for 2yxd:
      1. 1379771Domain d2yxda_: 2yxd A: [170905]
        automated match to d1f38a_
        complexed with mes, so4
      2. 1379772Domain d2yxdb_: 2yxd B: [170906]
        automated match to d1f38a_
        complexed with mes, so4
    2. Domains for 2yxe:
      1. 1379769Domain d2yxea_: 2yxe A: [170907]
        automated match to d1jg1a_
        complexed with act
      2. 1379770Domain d2yxeb_: 2yxe B: [170908]
        automated match to d1jg1a_
        complexed with act
  26. 1379773Modoc virus [TaxId:64300] [189030] (2 PDB entries)
    1. Domains for 2wa1:
      1. 1379776Domain d2wa1a_: 2wa1 A: [169154]
        automated match to d1l9ka_
        complexed with so4
      2. 1379777Domain d2wa1b_: 2wa1 B: [169155]
        automated match to d1l9ka_
        complexed with so4
    2. Domains for 2wa2:
      1. 1379774Domain d2wa2a_: 2wa2 A: [169156]
        automated match to d1l9ka_
        complexed with sam, so4
      2. 1379775Domain d2wa2b_: 2wa2 B: [169157]
        automated match to d1l9ka_
        complexed with sam, so4
  27. 1379778Mouse (Mus musculus) [TaxId:10090] [187843] (1 PDB entry)
  28. 1379783Plasmodium falciparum [TaxId:36329] [187826] (10 PDB entries)
    1. Domains for 2hte:
      1. 1379794Domain d2htea_: 2hte A: [165243]
        automated match to d1xj5a_
        complexed with 1pg, mta, so4, unx
      2. 1379795Domain d2hteb_: 2hte B: [165244]
        automated match to d1xj5a_
        complexed with 1pg, mta, so4, unx
      3. 1379796Domain d2htec_: 2hte C: [165245]
        automated match to d1xj5a_
        complexed with 1pg, mta, so4, unx
    2. Domains for 2i7c:
      1. 1379784Domain d2i7ca_: 2i7c A: [165417]
        automated match to d1xj5a_
        complexed with 1pg, aat, gol
      2. 1379785Domain d2i7cb_: 2i7c B: [165418]
        automated match to d1xj5a_
        complexed with 1pg, aat, gol
      3. 1379786Domain d2i7cc_: 2i7c C: [165419]
        automated match to d1xj5a_
        complexed with 1pg, aat, gol
    3. Domains for 2pbf:
      1. 1379806Domain d2pbfa_: 2pbf A: [167109]
        automated match to d1i1na_
        complexed with sah
      2. 1379807Domain d2pbfb_: 2pbf B: [167110]
        automated match to d1i1na_
        complexed with sah
    4. Domain for 2plw:
    5. Domains for 2pss:
      1. 1379808Domain d2pssa_: 2pss A: [205636]
        automated match to d1xj5b_
        complexed with 1pg, gol, so4
      2. 1379809Domain d2pssb_: 2pss B: [205637]
        automated match to d1xj5b_
        complexed with 1pg, gol, so4
      3. 1379810Domain d2pssc_: 2pss C: [205638]
        automated match to d1xj5b_
        complexed with 1pg, gol, so4
    6. Domains for 2pt6:
      1. 1379791Domain d2pt6a_: 2pt6 A: [205639]
        automated match to d1xj5b_
        complexed with 1pg, gol, s4m
      2. 1379792Domain d2pt6b_: 2pt6 B: [205640]
        automated match to d1xj5b_
        complexed with 1pg, gol, s4m
      3. 1379793Domain d2pt6c_: 2pt6 C: [205641]
        automated match to d1xj5b_
        complexed with 1pg, gol, s4m
    7. Domains for 2pt9:
      1. 1379803Domain d2pt9a_: 2pt9 A: [205642]
        automated match to d1xj5b_
        complexed with 1pg, 2mh, gol, s4m, so4
      2. 1379804Domain d2pt9b_: 2pt9 B: [205643]
        automated match to d1xj5b_
        complexed with 1pg, 2mh, gol, s4m, so4
      3. 1379805Domain d2pt9c_: 2pt9 C: [205644]
        automated match to d1xj5b_
        complexed with 1pg, 2mh, gol, s4m, so4
    8. Domains for 2pwp:
      1. 1379800Domain d2pwpa_: 2pwp A: [167314]
        automated match to d1xj5a_
        complexed with gol, so4, spd
      2. 1379801Domain d2pwpb_: 2pwp B: [167315]
        automated match to d1xj5a_
        complexed with gol, so4, spd
      3. 1379802Domain d2pwpc_: 2pwp C: [167316]
        automated match to d1xj5a_
        complexed with gol, so4, spd
    9. Domains for 3b7p:
      1. 1379797Domain d3b7pa_: 3b7p A: [172470]
        automated match to d1xj5a_
        complexed with mta, spm
      2. 1379798Domain d3b7pb_: 3b7p B: [172471]
        automated match to d1xj5a_
        complexed with mta, spm
      3. 1379799Domain d3b7pc_: 3b7p C: [172472]
        automated match to d1xj5a_
        complexed with mta, spm
    10. Domains for 3rie:
      1. 1379788Domain d3riea_: 3rie A: [200479]
        automated match to d2htea_
        complexed with 1pg, gol, jfq, mta
      2. 1379789Domain d3rieb_: 3rie B: [195538]
        automated match to d2i7ca_
        complexed with 1pg, gol, jfq, mta
      3. 1379790Domain d3riec_: 3rie C: [195537]
        automated match to d2i7ca_
        complexed with 1pg, gol, jfq, mta
  29. 1379811Pyrobaculum aerophilum [TaxId:178306] [236086] (1 PDB entry)
  30. 1379813Pyrococcus abyssi [TaxId:272844] [225897] (2 PDB entries)
    1. Domains for 3lga:
      1. 1379814Domain d3lgaa_: 3lga A: [212870]
        automated match to d2yvla_
        protein/RNA complex; complexed with sah, so4
      2. 1379815Domain d3lgab_: 3lga B: [212871]
        automated match to d2yvla_
        protein/RNA complex; complexed with sah, so4
      3. 1379816Domain d3lgac_: 3lga C: [212872]
        automated match to d2yvla_
        protein/RNA complex; complexed with sah, so4
      4. 1379817Domain d3lgad_: 3lga D: [212873]
        automated match to d2yvla_
        protein/RNA complex; complexed with sah, so4
    2. Domains for 3lhd:
      1. 1379818Domain d3lhda_: 3lhd A: [212885]
        automated match to d2yvla_
        protein/RNA complex; complexed with sah
      2. 1379819Domain d3lhdb_: 3lhd B: [212886]
        automated match to d2yvla_
        protein/RNA complex; complexed with sah
      3. 1379820Domain d3lhdc_: 3lhd C: [212887]
        automated match to d2yvla_
        protein/RNA complex; complexed with sah
      4. 1379821Domain d3lhdd_: 3lhd D: [212888]
        automated match to d2yvla_
        protein/RNA complex; complexed with sah
  31. 1379822Pyrococcus abyssi [TaxId:29292] [225890] (1 PDB entry)
  32. 1379824Rhodobacter capsulatus [TaxId:272942] [226150] (1 PDB entry)
  33. 1379827Rickettsia bellii [TaxId:336407] [226653] (1 PDB entry)
  34. 1379829Staphylococcus aureus [TaxId:196620] [233047] (1 PDB entry)
  35. 1379832Sulfolobus solfataricus [TaxId:2287] [189014] (1 PDB entry)
  36. 1379834Synechocystis sp. [TaxId:1148] [195466] (1 PDB entry)
  37. 1379836Thermoplasma volcanium [TaxId:50339] [188579] (1 PDB entry)
  38. 1379838Thermus thermophilus [TaxId:262724] [231176] (1 PDB entry)
  39. 1379841Thermus thermophilus [TaxId:300852] [225633] (5 PDB entries)
    1. Domains for 3fut:
      1. 1379842Domain d3futa_: 3fut A: [210179]
        automated match to d3tpzb_
      2. 1379843Domain d3futb_: 3fut B: [210180]
        automated match to d3tpzb_
    2. Domain for 3fuu:
    3. Domains for 3fuv:
      1. 1379849Domain d3fuva_: 3fuv A: [210182]
        automated match to d3tpzb_
      2. 1379850Domain d3fuvb_: 3fuv B: [210183]
        automated match to d3tpzb_
      3. 1379851Domain d3fuvc_: 3fuv C: [210184]
        automated match to d3tpzb_
    4. Domain for 3fuw:
    5. Domains for 3fux:
      1. 1379846Domain d3fuxa_: 3fux A: [210186]
        automated match to d3tpzb_
        protein/RNA complex; complexed with mta
      2. 1379847Domain d3fuxb_: 3fux B: [210187]
        automated match to d3tpzb_
        protein/RNA complex; complexed with mta
      3. 1379848Domain d3fuxc_: 3fux C: [210188]
        automated match to d3tpzb_
        protein/RNA complex; complexed with mta
  40. 1379852Trypanosoma cruzi [TaxId:353153] [188400] (2 PDB entries)
    1. Domains for 3bwb:
      1. 1379855Domain d3bwba_: 3bwb A: [172877]
        automated match to d1xj5a_
      2. 1379856Domain d3bwbb_: 3bwb B: [172878]
        automated match to d1xj5a_
    2. Domains for 3bwc:
      1. 1379853Domain d3bwca_: 3bwc A: [172879]
        automated match to d1xj5a_
        complexed with bme, sam
      2. 1379854Domain d3bwcb_: 3bwc B: [172880]
        automated match to d1xj5a_
        complexed with bme, sam
  41. 1379857Yellow fever virus [TaxId:11090] [188732] (6 PDB entries)
    1. Domain for 3eva:
    2. Domain for 3evb:
    3. Domain for 3evc:
    4. Domain for 3evd:
    5. Domain for 3eve:
    6. Domain for 3evf:
  42. 1379864Yokose virus [TaxId:64294] [225637] (1 PDB entry)

More info for Protein automated matches from c.66.1.0: automated matches

Timeline for Protein automated matches from c.66.1.0: automated matches: