Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2492802Fold c.119: DAK1/DegV-like [82548] (1 superfamily)
    2 different domains; d1: [core: 3 layers, a/b/a; parallel sheet of 5 strands, order: 2134]; D2: [2 layers, a/b; mixed sheet of 6 strands, order 321645; strands 2 and 6 are antiparallel to the rest]
  4. 2492803Superfamily c.119.1: DAK1/DegV-like [82549] (3 families) (S)
    domain folds and architecture show some similarity to the tubulin-like GTPases; the nucleotide-binding sites of the Dihydroxyacetone kinase and tubulin families are different
  5. 2492850Family c.119.1.0: automated matches [191443] (1 protein)
    not a true family
  6. 2492851Protein automated matches [190655] (11 species)
    not a true protein

Species:

  1. 2492852Bacillus subtilis [TaxId:1423] [255836] (1 PDB entry)
  2. 2492854Eubacterium eligens [TaxId:39485] [188765] (2 PDB entries)
    1. Domain for 3fdj:
    2. Domain for 5uxy:
  3. 2492856Eubacterium ventriosum [TaxId:411463] [189476] (1 PDB entry)
  4. 2492859Lactococcus lactis [TaxId:1358] [188636] (3 PDB entries)
    1. Domains for 2iu4:
      1. 2492860Domain d2iu4a1: 2iu4 A:8-328 [198081]
        Other proteins in same PDB: d2iu4a2, d2iu4b2
        automated match to d2iu4b_
        complexed with so4
      2. 2492861Domain d2iu4b1: 2iu4 B:2-328 [193815]
        Other proteins in same PDB: d2iu4a2, d2iu4b2
        automated match to d3ct4a_
        complexed with so4
    2. Domains for 2iu6:
      1. 2492862Domain d2iu6a1: 2iu6 A:2-328 [204860]
        Other proteins in same PDB: d2iu6a2, d2iu6b2
        automated match to d2iu4b_
        complexed with gol
      2. 2492863Domain d2iu6b1: 2iu6 B:2-328 [204861]
        Other proteins in same PDB: d2iu6a2, d2iu6b2
        automated match to d2iu4b_
        complexed with gol
    3. Domains for 3ct4:
      1. 2492864Domain d3ct4a_: 3ct4 A: [173443]
        automated match to d1oi2a_
        complexed with 2ha
      2. 2492865Domain d3ct4b_: 3ct4 B: [173444]
        automated match to d1oi2a_
        complexed with 2ha
      3. 2492866Domain d3ct4c_: 3ct4 C: [173445]
        automated match to d1oi2a_
        complexed with 2ha
  5. 2492867Ruminococcus gnavus [TaxId:411470] [225774] (2 PDB entries)
    1. Domains for 3jr7:
      1. 2492868Domain d3jr7a_: 3jr7 A: [212056]
        automated match to d2g7za_
        complexed with na, pg6, po4
      2. 2492869Domain d3jr7b_: 3jr7 B: [212057]
        automated match to d2g7za_
        complexed with na, pg6, po4
    2. Domains for 5v85:
      1. 3060430Domain d5v85b_: 5v85 B: [360492]
        automated match to d3jr7a_
        complexed with na, po4, vca
      2. 3060451Domain d5v85a_: 5v85 A: [360513]
        automated match to d3jr7a_
        complexed with na, po4, vca
  6. 2492870Staphylococcus aureus [TaxId:196620] [311773] (1 PDB entry)
  7. 2492872Streptococcus agalactiae [TaxId:208435] [189256] (1 PDB entry)
  8. 2492874Streptococcus mutans [TaxId:210007] [256022] (1 PDB entry)
  9. 2492876Streptococcus pyogenes [TaxId:160490] [187737] (1 PDB entry)
  10. 2492879Thermus thermophilus HB8 [TaxId:300852] [188541] (1 PDB entry)
  11. 3047646Staphylococcus aureus [TaxId:1280] [347708] (4 PDB entries)
    1. Domains for 5uto:
      1. 3047647Domain d5utob1: 5uto B:1-288 [347709]
        Other proteins in same PDB: d5utob2
        automated match to d3pl5a_
        complexed with plm
      2. 3047687Domain d5utoa_: 5uto A: [347749]
        Other proteins in same PDB: d5utob2
        automated match to d3pl5a_
        complexed with plm
    2. Domains for 5woo:
      1. 3060431Domain d5wooa_: 5woo A: [360493]
        Other proteins in same PDB: d5woob2
        automated match to d3pl5a_
        complexed with gol, myr
      2. 3060432Domain d5woob1: 5woo B:1-288 [360494]
        Other proteins in same PDB: d5woob2
        automated match to d3pl5a_
        complexed with gol, myr
    3. Domains for 6alw:
      1. 3060295Domain d6alwb_: 6alw B: [360357]
        automated match to d3pl5a_
        complexed with bmj, bnv, gol
      2. 3060348Domain d6alwa_: 6alw A: [360410]
        automated match to d3pl5a_
        complexed with bmj, bnv, gol
    4. Domains for 6b9i:
      1. 3058347Domain d6b9ib_: 6b9i B: [358409]
        automated match to d3pl5a_
        complexed with d0g, gol, na
      2. 3058395Domain d6b9ia_: 6b9i A: [358457]
        automated match to d3pl5a_
        complexed with d0g, gol, na

More info for Protein automated matches from c.119.1.0: automated matches

Timeline for Protein automated matches from c.119.1.0: automated matches: