SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2010255Fold a.127: L-aspartase-like [48556] (1 superfamily)
    multihelical, consists of three all-alpha domains
  4. 2010256Superfamily a.127.1: L-aspartase-like [48557] (3 families) (S)
  5. 2010426Family a.127.1.0: automated matches [191431] (1 protein)
    not a true family
  6. 2010427Protein automated matches [190621] (17 species)
    not a true protein

Species:

  1. 2010428Brucella melitensis [TaxId:359391] [225949] (2 PDB entries)
    1. Domains for 3oce:
      1. 2010433Domain d3ocea1: 3oce A:2-461 [214303]
        Other proteins in same PDB: d3ocea2, d3oceb2, d3ocec2, d3oced2
        automated match to d3r6vf_
        complexed with cl, co, edo
      2. 2010434Domain d3oceb1: 3oce B:2-461 [214304]
        Other proteins in same PDB: d3ocea2, d3oceb2, d3ocec2, d3oced2
        automated match to d3r6vf_
        complexed with cl, co, edo
      3. 2010435Domain d3ocec1: 3oce C:2-460 [214305]
        Other proteins in same PDB: d3ocea2, d3oceb2, d3ocec2, d3oced2
        automated match to d3r6vf_
        complexed with cl, co, edo
      4. 2010436Domain d3oced1: 3oce D:2-460 [214306]
        Other proteins in same PDB: d3ocea2, d3oceb2, d3ocec2, d3oced2
        automated match to d3r6vf_
        complexed with cl, co, edo
    2. Domains for 3ocf:
      1. 2010429Domain d3ocfa_: 3ocf A: [214307]
        Other proteins in same PDB: d3ocfb2, d3ocfd2
        automated match to d3r6vd_
        complexed with cl, edo
      2. 2010430Domain d3ocfb1: 3ocf B:2-440 [214308]
        Other proteins in same PDB: d3ocfb2, d3ocfd2
        automated match to d3r6vd_
        complexed with cl, edo
      3. 2010431Domain d3ocfc_: 3ocf C: [214309]
        Other proteins in same PDB: d3ocfb2, d3ocfd2
        automated match to d3r6vd_
        complexed with cl, edo
      4. 2010432Domain d3ocfd1: 3ocf D:2-440 [214310]
        Other proteins in same PDB: d3ocfb2, d3ocfd2
        automated match to d3r6vd_
        complexed with cl, edo
  2. 2010437Francisella tularensis [TaxId:177416] [195577] (2 PDB entries)
    1. Domains for 4eei:
      1. 2010438Domain d4eeia1: 4eei A:1-432 [195579]
        Other proteins in same PDB: d4eeia2, d4eeib2
        automated match to d1c3ca_
        complexed with amp, cl, edo, k, sin
      2. 2010439Domain d4eeib1: 4eei B:1-432 [195578]
        Other proteins in same PDB: d4eeia2, d4eeib2
        automated match to d1c3ca_
        complexed with amp, cl, edo, k, sin
    2. Domains for 5hw2:
      1. 2271518Domain d5hw2a1: 5hw2 A:1-432 [314819]
        Other proteins in same PDB: d5hw2a2, d5hw2b2
        automated match to d2x75a_
        complexed with edo, fum, k, po4
      2. 2271526Domain d5hw2d_: 5hw2 D: [314827]
        Other proteins in same PDB: d5hw2a2, d5hw2b2
        automated match to d2x75a_
        complexed with edo, fum, k, po4
      3. 2271577Domain d5hw2c_: 5hw2 C: [314878]
        Other proteins in same PDB: d5hw2a2, d5hw2b2
        automated match to d2x75a_
        complexed with edo, fum, k, po4
      4. 2271698Domain d5hw2b1: 5hw2 B:1-432 [314999]
        Other proteins in same PDB: d5hw2a2, d5hw2b2
        automated match to d2x75a_
        complexed with edo, fum, k, po4
  3. 2010440Human (Homo sapiens) [TaxId:9606] [256256] (5 PDB entries)
    1. Domains for 2j84:
      1. 2010444Domain d2j84a_: 2j84 A: [304102]
        automated match to d2vd6b_
        complexed with amp, cl, gol
      2. 2010445Domain d2j84c_: 2j84 C: [304103]
        automated match to d2vd6b_
        complexed with amp, cl, gol
      3. 2010446Domain d2j84d_: 2j84 D: [304104]
        automated match to d2vd6b_
        complexed with amp, cl, gol
    2. Domains for 2j91:
      1. 2010441Domain d2j91a_: 2j91 A: [264323]
        automated match to d4ffxc_
        complexed with amp, cl, gol
      2. 2010442Domain d2j91c_: 2j91 C: [264324]
        automated match to d4ffxc_
        complexed with amp, cl, gol
      3. 2010443Domain d2j91d_: 2j91 D: [264325]
        automated match to d4ffxc_
        complexed with amp, cl, gol
    3. Domains for 2vd6:
      1. 2010447Domain d2vd6a_: 2vd6 A: [264523]
        automated match to d4ffxc_
        complexed with 2sa, amp, cl, fum, gol
      2. 2010448Domain d2vd6b_: 2vd6 B: [264524]
        automated match to d4ffxc_
        complexed with 2sa, amp, cl, fum, gol
      3. 2010449Domain d2vd6c_: 2vd6 C: [264525]
        automated match to d4ffxc_
        complexed with 2sa, amp, cl, fum, gol
      4. 2010450Domain d2vd6d_: 2vd6 D: [264526]
        automated match to d4ffxc_
        complexed with 2sa, amp, cl, fum, gol
    4. Domains for 4ffx:
      1. 2010455Domain d4ffxa_: 4ffx A: [262703]
        automated match to d4ffxc_
        mutant
      2. 2010456Domain d4ffxb_: 4ffx B: [262704]
        automated match to d4ffxc_
        mutant
      3. 2010457Domain d4ffxc_: 4ffx C: [251963]
        automated match to d3c8ta_
        mutant
      4. 2010458Domain d4ffxd_: 4ffx D: [262705]
        automated match to d4ffxc_
        mutant
    5. Domains for 4flc:
      1. 2010451Domain d4flca_: 4flc A: [266263]
        automated match to d4ffxc_
        mutant
      2. 2010452Domain d4flcb_: 4flc B: [266264]
        automated match to d4ffxc_
        mutant
      3. 2010453Domain d4flcc_: 4flc C: [266265]
        automated match to d4ffxc_
        mutant
      4. 2010454Domain d4flcd_: 4flc D: [266266]
        automated match to d4ffxc_
        mutant
  4. 2010459Legionella pneumophila [TaxId:272624] [311274] (1 PDB entry)
  5. 2010461Mesorhizobium sp. [TaxId:266779] [188363] (1 PDB entry)
  6. 2010463Mycobacterium abscessus [TaxId:561007] [226126] (1 PDB entry)
  7. 2010466Mycobacterium marinum [TaxId:216594] [226063] (1 PDB entry)
  8. 2010471Mycobacterium smegmatis [TaxId:246196] [233438] (1 PDB entry)
  9. 2010473Mycobacterium tuberculosis [TaxId:83332] [225923] (5 PDB entries)
    1. Domains for 3no9:
      1. 2010490Domain d3no9a_: 3no9 A: [214018]
        automated match to d1vdka_
      2. 2010491Domain d3no9b_: 3no9 B: [214019]
        automated match to d1vdka_
      3. 2010492Domain d3no9c_: 3no9 C: [214020]
        automated match to d1vdka_
      4. 2010493Domain d3no9d_: 3no9 D: [214021]
        automated match to d1vdka_
    2. Domains for 4adl:
      1. 2010486Domain d4adla_: 4adl A: [250996]
        automated match to d4apbd_
        complexed with lmr
      2. 2010487Domain d4adlb_: 4adl B: [250997]
        automated match to d4apbd_
        complexed with lmr
      3. 2010488Domain d4adlc_: 4adl C: [250998]
        automated match to d4apbd_
        complexed with lmr
      4. 2010489Domain d4adld_: 4adl D: [250999]
        automated match to d4apbd_
        complexed with lmr
    3. Domains for 4adm:
      1. 2010474Domain d4adma_: 4adm A: [251000]
        automated match to d4apbd_
        complexed with gol, srt
      2. 2010475Domain d4admb_: 4adm B: [251001]
        automated match to d4apbd_
        complexed with gol, srt
      3. 2010476Domain d4admc_: 4adm C: [251002]
        automated match to d4apbd_
        complexed with gol, srt
      4. 2010477Domain d4admd_: 4adm D: [251003]
        automated match to d4apbd_
        complexed with gol, srt
    4. Domains for 4apa:
      1. 2010482Domain d4apaa_: 4apa A: [219089]
        automated match to d1vdka_
      2. 2010483Domain d4apab_: 4apa B: [219090]
        automated match to d1vdka_
      3. 2010484Domain d4apac_: 4apa C: [219091]
        automated match to d1vdka_
      4. 2010485Domain d4apad_: 4apa D: [219092]
        automated match to d1vdka_
    5. Domains for 4apb:
      1. 2010478Domain d4apba_: 4apb A: [219093]
        automated match to d1vdka_
        complexed with ca, fum
      2. 2010479Domain d4apbb_: 4apb B: [219094]
        automated match to d1vdka_
        complexed with ca, fum
      3. 2010480Domain d4apbc_: 4apb C: [219095]
        automated match to d1vdka_
        complexed with ca, fum
      4. 2010481Domain d4apbd_: 4apb D: [219096]
        automated match to d1vdka_
        complexed with ca, fum
  10. 2010494Nematode (Caenorhabditis elegans) [TaxId:6239] [267768] (1 PDB entry)
  11. 2010496Plasmodium vivax [TaxId:5855] [267783] (2 PDB entries)
    1. Domains for 2hvg:
      1. 2010499Domain d2hvga_: 2hvg A: [264309]
        automated match to d4ffxc_
        complexed with so4
      2. 2010500Domain d2hvgb_: 2hvg B: [264310]
        automated match to d4ffxc_
        complexed with so4
    2. Domains for 2qga:
      1. 2010497Domain d2qgab_: 2qga B: [264458]
        automated match to d4ffxc_
        complexed with amp, ca, so4
      2. 2010498Domain d2qgac_: 2qga C: [264459]
        automated match to d4ffxc_
        complexed with amp, ca, so4
  12. 2010501Sinorhizobium meliloti [TaxId:266834] [256286] (1 PDB entry)
  13. 2010506Taxus canadensis [TaxId:88032] [189674] (1 PDB entry)
  14. 2010509Taxus wallichiana [TaxId:29808] [189805] (9 PDB entries)
    1. Domains for 2yii:
      1. 2010514Domain d2yiia_: 2yii A: [170805]
        automated match to d1w27a_
        complexed with bme, fmt, gol
      2. 2010515Domain d2yiib_: 2yii B: [170806]
        automated match to d1w27a_
        complexed with bme, fmt, gol
      3. 2010516Domain d2yiic_: 2yii C: [170807]
        automated match to d1w27a_
        complexed with bme, fmt, gol
      4. 2010517Domain d2yiid_: 2yii D: [170808]
        automated match to d1w27a_
        complexed with bme, fmt, gol
    2. Domains for 4bab:
      1. 2010536Domain d4baba_: 4bab A: [219389]
        automated match to d2yiia_
      2. 2010537Domain d4babb_: 4bab B: [219390]
        automated match to d2yiib_
      3. 2010538Domain d4babc_: 4bab C: [219391]
        automated match to d2yiia_
      4. 2010539Domain d4babd_: 4bab D: [219392]
        automated match to d2yiia_
    3. Domains for 4c5r:
      1. 2010522Domain d4c5ra_: 4c5r A: [256584]
        automated match to d1w27a_
        complexed with bq7, gol
      2. 2010523Domain d4c5rb_: 4c5r B: [256583]
        automated match to d1w27a_
        complexed with bq7, gol
      3. 2010524Domain d4c5rc_: 4c5r C: [262552]
        automated match to d1w27a_
        complexed with bq7, gol
      4. 2010525Domain d4c5rd_: 4c5r D: [262553]
        automated match to d1w27a_
        complexed with bq7, gol
    4. Domains for 4c5s:
      1. 2010510Domain d4c5sa_: 4c5s A: [256586]
        automated match to d1w27a_
        complexed with bq7
      2. 2010511Domain d4c5sb_: 4c5s B: [262554]
        automated match to d1w27a_
        complexed with bq7
      3. 2010512Domain d4c5sc_: 4c5s C: [262555]
        automated match to d1w27a_
        complexed with bq7
      4. 2010513Domain d4c5sd_: 4c5s D: [262556]
        automated match to d1w27a_
        complexed with bq7
    5. Domains for 4c5u:
      1. 2010532Domain d4c5ua_: 4c5u A: [256587]
        automated match to d1w27a_
      2. 2010533Domain d4c5ub_: 4c5u B: [262557]
        automated match to d1w27a_
      3. 2010534Domain d4c5uc_: 4c5u C: [262558]
        automated match to d1w27a_
      4. 2010535Domain d4c5ud_: 4c5u D: [262559]
        automated match to d1w27a_
    6. Domains for 4c6g:
      1. 2010526Domain d4c6ga_: 4c6g A: [256588]
        automated match to d1w27a_
      2. 2010527Domain d4c6gb_: 4c6g B: [262560]
        automated match to d1w27a_
      3. 2010528Domain d4c6gc_: 4c6g C: [262561]
        automated match to d1w27a_
      4. 2010529Domain d4c6gd_: 4c6g D: [262562]
        automated match to d1w27a_
    7. Domains for 4cq5:
      1. 2010518Domain d4cq5a_: 4cq5 A: [266028]
        automated match to d1w27a_
        complexed with edo, gol, tca
      2. 2010519Domain d4cq5b_: 4cq5 B: [266029]
        automated match to d1w27a_
        complexed with edo, gol, tca
      3. 2010520Domain d4cq5c_: 4cq5 C: [266030]
        automated match to d1w27a_
        complexed with edo, gol, tca
      4. 2010521Domain d4cq5d_: 4cq5 D: [266031]
        automated match to d1w27a_
        complexed with edo, gol, tca
    8. Domains for 4v2q:
      1. 2010530Domain d4v2qa_: 4v2q A: [261723]
        automated match to d1w27a_
      2. 2010531Domain d4v2qb_: 4v2q B: [261720]
        automated match to d1w27a_
    9. Domains for 4v2r:
      1. 2010540Domain d4v2ra_: 4v2r A: [261722]
        automated match to d1w27a_
      2. 2010541Domain d4v2rb_: 4v2r B: [261719]
        automated match to d1w27a_
  15. 2010542Thermus thermophilus HB8 [TaxId:300852] [187653] (1 PDB entry)
  16. 2275433Mycobacterium tuberculosis [TaxId:83331] [318734] (2 PDB entries)
    1. Domains for 5f91:
      1. 2275434Domain d5f91c_: 5f91 C: [318735]
        automated match to d4apbd_
        complexed with 5wj, cl, fmt
      2. 2275436Domain d5f91b_: 5f91 B: [318737]
        automated match to d4apbd_
        complexed with 5wj, cl, fmt
      3. 2275456Domain d5f91d_: 5f91 D: [318757]
        automated match to d4apbd_
        complexed with 5wj, cl, fmt
      4. 2275457Domain d5f91a_: 5f91 A: [318758]
        automated match to d4apbd_
        complexed with 5wj, cl, fmt
    2. Domains for 5f92:
      1. 2275435Domain d5f92d_: 5f92 D: [318736]
        automated match to d4apbd_
        complexed with cl, fmt, pg4
      2. 2275438Domain d5f92c_: 5f92 C: [318739]
        automated match to d4apbd_
        complexed with cl, fmt, pg4
      3. 2275452Domain d5f92b_: 5f92 B: [318753]
        automated match to d4apbd_
        complexed with cl, fmt, pg4
      4. 2275458Domain d5f92a_: 5f92 A: [318759]
        automated match to d4apbd_
        complexed with cl, fmt, pg4
  17. 2283308Schistosoma mansoni [TaxId:6183] [326609] (2 PDB entries)
    1. Domain for 5eyt:
    2. Domains for 5eyv:
      1. 2283309Domain d5eyvb_: 5eyv B: [326610]
        automated match to d2vd6b_
      2. 2283415Domain d5eyva_: 5eyv A: [326716]
        automated match to d2vd6b_

More info for Protein automated matches from a.127.1.0: automated matches

Timeline for Protein automated matches from a.127.1.0: automated matches: