Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2010255Fold a.127: L-aspartase-like [48556] (1 superfamily)
    multihelical, consists of three all-alpha domains
  4. 2010256Superfamily a.127.1: L-aspartase-like [48557] (3 families) (S)
  5. 2010426Family a.127.1.0: automated matches [191431] (1 protein)
    not a true family
  6. 2010427Protein automated matches [190621] (19 species)
    not a true protein

Species:

  1. 2010428Brucella melitensis [TaxId:359391] [225949] (2 PDB entries)
    1. Domains for 3oce:
      1. 2010433Domain d3ocea1: 3oce A:2-461 [214303]
        Other proteins in same PDB: d3ocea2, d3oceb2, d3ocec2, d3oced2
        automated match to d3r6vf_
        complexed with cl, co, edo
      2. 2010434Domain d3oceb1: 3oce B:2-461 [214304]
        Other proteins in same PDB: d3ocea2, d3oceb2, d3ocec2, d3oced2
        automated match to d3r6vf_
        complexed with cl, co, edo
      3. 2010435Domain d3ocec1: 3oce C:2-460 [214305]
        Other proteins in same PDB: d3ocea2, d3oceb2, d3ocec2, d3oced2
        automated match to d3r6vf_
        complexed with cl, co, edo
      4. 2010436Domain d3oced1: 3oce D:2-460 [214306]
        Other proteins in same PDB: d3ocea2, d3oceb2, d3ocec2, d3oced2
        automated match to d3r6vf_
        complexed with cl, co, edo
    2. Domains for 3ocf:
      1. 2010429Domain d3ocfa_: 3ocf A: [214307]
        Other proteins in same PDB: d3ocfb2, d3ocfd2
        automated match to d3r6vd_
        complexed with cl, edo
      2. 2010430Domain d3ocfb1: 3ocf B:2-440 [214308]
        Other proteins in same PDB: d3ocfb2, d3ocfd2
        automated match to d3r6vd_
        complexed with cl, edo
      3. 2010431Domain d3ocfc_: 3ocf C: [214309]
        Other proteins in same PDB: d3ocfb2, d3ocfd2
        automated match to d3r6vd_
        complexed with cl, edo
      4. 2010432Domain d3ocfd1: 3ocf D:2-440 [214310]
        Other proteins in same PDB: d3ocfb2, d3ocfd2
        automated match to d3r6vd_
        complexed with cl, edo
  2. 2010437Francisella tularensis [TaxId:177416] [195577] (2 PDB entries)
    1. Domains for 4eei:
      1. 2010438Domain d4eeia1: 4eei A:1-432 [195579]
        Other proteins in same PDB: d4eeia2, d4eeib2
        automated match to d1c3ca_
        complexed with amp, cl, edo, k, sin
      2. 2010439Domain d4eeib1: 4eei B:1-432 [195578]
        Other proteins in same PDB: d4eeia2, d4eeib2
        automated match to d1c3ca_
        complexed with amp, cl, edo, k, sin
    2. Domains for 5hw2:
      1. 2271518Domain d5hw2a1: 5hw2 A:1-432 [314819]
        Other proteins in same PDB: d5hw2a2, d5hw2b2
        automated match to d2x75a_
        complexed with edo, fum, k, po4
      2. 2271526Domain d5hw2d_: 5hw2 D: [314827]
        Other proteins in same PDB: d5hw2a2, d5hw2b2
        automated match to d2x75a_
        complexed with edo, fum, k, po4
      3. 2271577Domain d5hw2c_: 5hw2 C: [314878]
        Other proteins in same PDB: d5hw2a2, d5hw2b2
        automated match to d2x75a_
        complexed with edo, fum, k, po4
      4. 2271698Domain d5hw2b1: 5hw2 B:1-432 [314999]
        Other proteins in same PDB: d5hw2a2, d5hw2b2
        automated match to d2x75a_
        complexed with edo, fum, k, po4
  3. 2010440Human (Homo sapiens) [TaxId:9606] [256256] (5 PDB entries)
    1. Domains for 2j84:
      1. 2010444Domain d2j84a_: 2j84 A: [304102]
        automated match to d2vd6b_
        complexed with amp, cl, gol
      2. 2010445Domain d2j84c_: 2j84 C: [304103]
        automated match to d2vd6b_
        complexed with amp, cl, gol
      3. 2010446Domain d2j84d_: 2j84 D: [304104]
        automated match to d2vd6b_
        complexed with amp, cl, gol
    2. Domains for 2j91:
      1. 2010441Domain d2j91a_: 2j91 A: [264323]
        automated match to d4ffxc_
        complexed with amp, cl, gol
      2. 2010442Domain d2j91c_: 2j91 C: [264324]
        automated match to d4ffxc_
        complexed with amp, cl, gol
      3. 2010443Domain d2j91d_: 2j91 D: [264325]
        automated match to d4ffxc_
        complexed with amp, cl, gol
    3. Domains for 2vd6:
      1. 2010447Domain d2vd6a_: 2vd6 A: [264523]
        automated match to d4ffxc_
        complexed with 2sa, amp, cl, fum, gol
      2. 2010448Domain d2vd6b_: 2vd6 B: [264524]
        automated match to d4ffxc_
        complexed with 2sa, amp, cl, fum, gol
      3. 2010449Domain d2vd6c_: 2vd6 C: [264525]
        automated match to d4ffxc_
        complexed with 2sa, amp, cl, fum, gol
      4. 2010450Domain d2vd6d_: 2vd6 D: [264526]
        automated match to d4ffxc_
        complexed with 2sa, amp, cl, fum, gol
    4. Domains for 4ffx:
      1. 2010455Domain d4ffxa_: 4ffx A: [262703]
        automated match to d4ffxc_
        mutant
      2. 2010456Domain d4ffxb_: 4ffx B: [262704]
        automated match to d4ffxc_
        mutant
      3. 2010457Domain d4ffxc_: 4ffx C: [251963]
        automated match to d3c8ta_
        mutant
      4. 2010458Domain d4ffxd_: 4ffx D: [262705]
        automated match to d4ffxc_
        mutant
    5. Domains for 4flc:
      1. 2010451Domain d4flca_: 4flc A: [266263]
        automated match to d4ffxc_
        mutant
      2. 2010452Domain d4flcb_: 4flc B: [266264]
        automated match to d4ffxc_
        mutant
      3. 2010453Domain d4flcc_: 4flc C: [266265]
        automated match to d4ffxc_
        mutant
      4. 2010454Domain d4flcd_: 4flc D: [266266]
        automated match to d4ffxc_
        mutant
  4. 2010459Legionella pneumophila [TaxId:272624] [311274] (1 PDB entry)
  5. 2010461Mesorhizobium sp. [TaxId:266779] [188363] (1 PDB entry)
  6. 2010463Mycobacterium abscessus [TaxId:561007] [226126] (1 PDB entry)
  7. 2010466Mycobacterium marinum [TaxId:216594] [226063] (1 PDB entry)
  8. 2010471Mycobacterium smegmatis [TaxId:246196] [233438] (1 PDB entry)
  9. 2010473Mycobacterium tuberculosis [TaxId:83332] [225923] (5 PDB entries)
    1. Domains for 3no9:
      1. 2010490Domain d3no9a_: 3no9 A: [214018]
        automated match to d1vdka_
      2. 2010491Domain d3no9b_: 3no9 B: [214019]
        automated match to d1vdka_
      3. 2010492Domain d3no9c_: 3no9 C: [214020]
        automated match to d1vdka_
      4. 2010493Domain d3no9d_: 3no9 D: [214021]
        automated match to d1vdka_
    2. Domains for 4adl:
      1. 2010486Domain d4adla_: 4adl A: [250996]
        automated match to d4apbd_
        complexed with lmr
      2. 2010487Domain d4adlb_: 4adl B: [250997]
        automated match to d4apbd_
        complexed with lmr
      3. 2010488Domain d4adlc_: 4adl C: [250998]
        automated match to d4apbd_
        complexed with lmr
      4. 2010489Domain d4adld_: 4adl D: [250999]
        automated match to d4apbd_
        complexed with lmr
    3. Domains for 4adm:
      1. 2010474Domain d4adma_: 4adm A: [251000]
        automated match to d4apbd_
        complexed with gol, srt
      2. 2010475Domain d4admb_: 4adm B: [251001]
        automated match to d4apbd_
        complexed with gol, srt
      3. 2010476Domain d4admc_: 4adm C: [251002]
        automated match to d4apbd_
        complexed with gol, srt
      4. 2010477Domain d4admd_: 4adm D: [251003]
        automated match to d4apbd_
        complexed with gol, srt
    4. Domains for 4apa:
      1. 2010482Domain d4apaa_: 4apa A: [219089]
        automated match to d1vdka_
      2. 2010483Domain d4apab_: 4apa B: [219090]
        automated match to d1vdka_
      3. 2010484Domain d4apac_: 4apa C: [219091]
        automated match to d1vdka_
      4. 2010485Domain d4apad_: 4apa D: [219092]
        automated match to d1vdka_
    5. Domains for 4apb:
      1. 2010478Domain d4apba_: 4apb A: [219093]
        automated match to d1vdka_
        complexed with ca, fum
      2. 2010479Domain d4apbb_: 4apb B: [219094]
        automated match to d1vdka_
        complexed with ca, fum
      3. 2010480Domain d4apbc_: 4apb C: [219095]
        automated match to d1vdka_
        complexed with ca, fum
      4. 2010481Domain d4apbd_: 4apb D: [219096]
        automated match to d1vdka_
        complexed with ca, fum
  10. 2010494Nematode (Caenorhabditis elegans) [TaxId:6239] [267768] (1 PDB entry)
  11. 2010496Plasmodium vivax [TaxId:5855] [267783] (2 PDB entries)
    1. Domains for 2hvg:
      1. 2010499Domain d2hvga_: 2hvg A: [264309]
        automated match to d4ffxc_
        complexed with so4
      2. 2010500Domain d2hvgb_: 2hvg B: [264310]
        automated match to d4ffxc_
        complexed with so4
    2. Domains for 2qga:
      1. 2010497Domain d2qgab_: 2qga B: [264458]
        automated match to d4ffxc_
        complexed with amp, ca, so4
      2. 2010498Domain d2qgac_: 2qga C: [264459]
        automated match to d4ffxc_
        complexed with amp, ca, so4
  12. 2010501Sinorhizobium meliloti [TaxId:266834] [256286] (1 PDB entry)
  13. 2010506Taxus canadensis [TaxId:88032] [189674] (1 PDB entry)
  14. 2010509Taxus wallichiana [TaxId:29808] [189805] (9 PDB entries)
    1. Domains for 2yii:
      1. 2010514Domain d2yiia_: 2yii A: [170805]
        automated match to d1w27a_
        complexed with bme, fmt, gol
      2. 2010515Domain d2yiib_: 2yii B: [170806]
        automated match to d1w27a_
        complexed with bme, fmt, gol
      3. 2010516Domain d2yiic_: 2yii C: [170807]
        automated match to d1w27a_
        complexed with bme, fmt, gol
      4. 2010517Domain d2yiid_: 2yii D: [170808]
        automated match to d1w27a_
        complexed with bme, fmt, gol
    2. Domains for 4bab:
      1. 2010536Domain d4baba_: 4bab A: [219389]
        automated match to d2yiia_
      2. 2010537Domain d4babb_: 4bab B: [219390]
        automated match to d2yiib_
      3. 2010538Domain d4babc_: 4bab C: [219391]
        automated match to d2yiia_
      4. 2010539Domain d4babd_: 4bab D: [219392]
        automated match to d2yiia_
    3. Domains for 4c5r:
      1. 2010522Domain d4c5ra_: 4c5r A: [256584]
        automated match to d1w27a_
        complexed with bq7, gol
      2. 2010523Domain d4c5rb_: 4c5r B: [256583]
        automated match to d1w27a_
        complexed with bq7, gol
      3. 2010524Domain d4c5rc_: 4c5r C: [262552]
        automated match to d1w27a_
        complexed with bq7, gol
      4. 2010525Domain d4c5rd_: 4c5r D: [262553]
        automated match to d1w27a_
        complexed with bq7, gol
    4. Domains for 4c5s:
      1. 2010510Domain d4c5sa_: 4c5s A: [256586]
        automated match to d1w27a_
        complexed with bq7
      2. 2010511Domain d4c5sb_: 4c5s B: [262554]
        automated match to d1w27a_
        complexed with bq7
      3. 2010512Domain d4c5sc_: 4c5s C: [262555]
        automated match to d1w27a_
        complexed with bq7
      4. 2010513Domain d4c5sd_: 4c5s D: [262556]
        automated match to d1w27a_
        complexed with bq7
    5. Domains for 4c5u:
      1. 2010532Domain d4c5ua_: 4c5u A: [256587]
        automated match to d1w27a_
      2. 2010533Domain d4c5ub_: 4c5u B: [262557]
        automated match to d1w27a_
      3. 2010534Domain d4c5uc_: 4c5u C: [262558]
        automated match to d1w27a_
      4. 2010535Domain d4c5ud_: 4c5u D: [262559]
        automated match to d1w27a_
    6. Domains for 4c6g:
      1. 2010526Domain d4c6ga_: 4c6g A: [256588]
        automated match to d1w27a_
      2. 2010527Domain d4c6gb_: 4c6g B: [262560]
        automated match to d1w27a_
      3. 2010528Domain d4c6gc_: 4c6g C: [262561]
        automated match to d1w27a_
      4. 2010529Domain d4c6gd_: 4c6g D: [262562]
        automated match to d1w27a_
    7. Domains for 4cq5:
      1. 2010518Domain d4cq5a_: 4cq5 A: [266028]
        automated match to d1w27a_
        complexed with edo, gol, tca
      2. 2010519Domain d4cq5b_: 4cq5 B: [266029]
        automated match to d1w27a_
        complexed with edo, gol, tca
      3. 2010520Domain d4cq5c_: 4cq5 C: [266030]
        automated match to d1w27a_
        complexed with edo, gol, tca
      4. 2010521Domain d4cq5d_: 4cq5 D: [266031]
        automated match to d1w27a_
        complexed with edo, gol, tca
    8. Domains for 4v2q:
      1. 2010530Domain d4v2qa_: 4v2q A: [261723]
        automated match to d1w27a_
      2. 2010531Domain d4v2qb_: 4v2q B: [261720]
        automated match to d1w27a_
    9. Domains for 4v2r:
      1. 2010540Domain d4v2ra_: 4v2r A: [261722]
        automated match to d1w27a_
      2. 2010541Domain d4v2rb_: 4v2r B: [261719]
        automated match to d1w27a_
  15. 2010542Thermus thermophilus HB8 [TaxId:300852] [187653] (1 PDB entry)
  16. 2275433Mycobacterium tuberculosis [TaxId:83331] [318734] (2 PDB entries)
    1. Domains for 5f91:
      1. 2275434Domain d5f91c_: 5f91 C: [318735]
        automated match to d4apbd_
        complexed with 5wj, cl, fmt
      2. 2275436Domain d5f91b_: 5f91 B: [318737]
        automated match to d4apbd_
        complexed with 5wj, cl, fmt
      3. 2275456Domain d5f91d_: 5f91 D: [318757]
        automated match to d4apbd_
        complexed with 5wj, cl, fmt
      4. 2275457Domain d5f91a_: 5f91 A: [318758]
        automated match to d4apbd_
        complexed with 5wj, cl, fmt
    2. Domains for 5f92:
      1. 2275435Domain d5f92d_: 5f92 D: [318736]
        automated match to d4apbd_
        complexed with cl, fmt, pg4
      2. 2275438Domain d5f92c_: 5f92 C: [318739]
        automated match to d4apbd_
        complexed with cl, fmt, pg4
      3. 2275452Domain d5f92b_: 5f92 B: [318753]
        automated match to d4apbd_
        complexed with cl, fmt, pg4
      4. 2275458Domain d5f92a_: 5f92 A: [318759]
        automated match to d4apbd_
        complexed with cl, fmt, pg4
  17. 2283308Schistosoma mansoni [TaxId:6183] [326609] (2 PDB entries)
    1. Domain for 5eyt:
    2. Domains for 5eyv:
      1. 2283309Domain d5eyvb_: 5eyv B: [326610]
        automated match to d2vd6b_
      2. 2283415Domain d5eyva_: 5eyv A: [326716]
        automated match to d2vd6b_
  18. 2291392Candida albicans [TaxId:237561] [334693] (1 PDB entry)
  19. 2291887Cryptococcus neoformans [TaxId:5207] [335188] (1 PDB entry)

More info for Protein automated matches from a.127.1.0: automated matches

Timeline for Protein automated matches from a.127.1.0: automated matches: