SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.12: Phosphoenolpyruvate/pyruvate domain [51621] (8 families)
Family c.1.12.0: automated matches [191427] (1 protein)
not a true family
Protein automated matches [190614] (10 species)
not a true protein

Species:

Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [226572] (2 PDB entries)
1. Domains for 4iqd:
  1. Domain d4iqda_: 4iqd A: [223308]
    automated match to d3eoob_
    complexed with pyr
  2. Domain d4iqdb_: 4iqd B: [223309]
    automated match to d3eoob_
    complexed with pyr
2. Domains for 4iqe:
  1. Domain d4iqea_: 4iqe A: [223310]
    automated match to d3eoob_
  2. Domain d4iqeb_: 4iqe B: [223311]
    automated match to d3eoob_
Aspergillus niger [TaxId:5061] [255825] (2 PDB entries)
1. Domains for 3fa3:
  1. Domain d3fa3a_: 3fa3 A: [246044]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
  2. Domain d3fa3b_: 3fa3 B: [246045]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
  3. Domain d3fa3c_: 3fa3 C: [246046]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
  4. Domain d3fa3d_: 3fa3 D: [246047]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
  5. Domain d3fa3e_: 3fa3 E: [246048]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
  6. Domain d3fa3f_: 3fa3 F: [246049]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
  7. Domain d3fa3g_: 3fa3 G: [246050]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
  8. Domain d3fa3h_: 3fa3 H: [246051]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
  9. Domain d3fa3i_: 3fa3 I: [246052]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
  10. Domain d3fa3j_: 3fa3 J: [246053]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
  11. Domain d3fa3k_: 3fa3 K: [246054]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
  12. Domain d3fa3l_: 3fa3 L: [246055]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
  13. Domain d3fa3m_: 3fa3 M: [246056]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
  14. Domain d3fa3n_: 3fa3 N: [246057]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
  15. Domain d3fa3o_: 3fa3 O: [246058]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
  16. Domain d3fa3p_: 3fa3 P: [246059]
    automated match to d3m0ja_
    complexed with gol, mn, oaf
2. Domains for 3fa4:
  1. Domain d3fa4a_: 3fa4 A: [246060]
    automated match to d3m0ja_
    complexed with mg
  2. Domain d3fa4b_: 3fa4 B: [246061]
    automated match to d3m0ja_
    complexed with mg
  3. Domain d3fa4c_: 3fa4 C: [246062]
    automated match to d3m0ja_
    complexed with mg
  4. Domain d3fa4d_: 3fa4 D: [246063]
    automated match to d3m0ja_
    complexed with mg
  5. Domain d3fa4e_: 3fa4 E: [246064]
    automated match to d3m0ja_
    complexed with mg
  6. Domain d3fa4f_: 3fa4 F: [246065]
    automated match to d3m0ja_
    complexed with mg
  7. Domain d3fa4g_: 3fa4 G: [246066]
    automated match to d3m0ja_
    complexed with mg
  8. Domain d3fa4h_: 3fa4 H: [246067]
    automated match to d3m0ja_
    complexed with mg
  9. Domain d3fa4i_: 3fa4 I: [246068]
    automated match to d3m0ja_
    complexed with mg
  10. Domain d3fa4j_: 3fa4 J: [246069]
    automated match to d3m0ja_
    complexed with mg
  11. Domain d3fa4k_: 3fa4 K: [246070]
    automated match to d3m0ja_
    complexed with mg
  12. Domain d3fa4l_: 3fa4 L: [246071]
    automated match to d3m0ja_
    complexed with mg
Burkholderia cenocepacia [TaxId:216591] [227802] (1 PDB entry)
- Domains for 4mf4:
  1. Domain d4mf4a_: 4mf4 A: [235605]
    automated match to d4mf4f_
    complexed with edo
  2. Domain d4mf4b_: 4mf4 B: [235606]
    automated match to d4mf4f_
    complexed with edo
  3. Domain d4mf4c_: 4mf4 C: [235607]
    automated match to d4mf4f_
    complexed with edo
  4. Domain d4mf4d_: 4mf4 D: [235608]
    automated match to d4mf4f_
    complexed with edo
  5. Domain d4mf4e_: 4mf4 E: [227804]
    automated match to d3qz6a_
    complexed with edo
  6. Domain d4mf4f_: 4mf4 F: [227803]
    automated match to d3qz6a_
    complexed with edo
Clove pink (Dianthus caryophyllus) [TaxId:3570] [255010] (1 PDB entry)
- Domains for 1zlp:
  1. Domain d1zlpa_: 1zlp A: [241143]
    automated match to d1pymb_
    complexed with gaq, mg
  2. Domain d1zlpb_: 1zlp B: [241144]
    automated match to d1pymb_
    complexed with gaq, mg
Cryphonectria parasitica [TaxId:5116] [232864] (3 PDB entries)
1. Domain for 3lye:
  - Domain d3lyea_: 3lye A: [232865]
    automated match to d4iqda_
    complexed with ca
2. Domain for 3m0j:
  - Domain d3m0ja_: 3m0j A: [232868]
    automated match to d4iqda_
    complexed with ca, mn, oaf
3. Domain for 3m0k:
  - Domain d3m0ka_: 3m0k A: [232869]
    automated match to d4iqda_
    complexed with ca, mn, oxl
Desulfitobacterium hafniense [TaxId:272564] [189673] (1 PDB entry)
- Domain for 3qz6:
  - Domain d3qz6a_: 3qz6 A: [184716]
    automated match to d1dxea_
    complexed with zn
Escherichia coli K-12 [TaxId:83333] [188593] (2 PDB entries)
1. Domains for 2vws:
  1. Domain d2vwsa_: 2vws A: [168886]
    automated match to d1dxea_
    complexed with gol, po4
  2. Domain d2vwsb_: 2vws B: [168887]
    automated match to d1dxea_
    complexed with gol, po4
  3. Domain d2vwsc_: 2vws C: [168888]
    automated match to d1dxea_
    complexed with gol, po4
2. Domains for 2vwt:
  1. Domain d2vwta_: 2vwt A: [168889]
    automated match to d1dxea_
    complexed with gol, mg, po4, pyr
  2. Domain d2vwtb_: 2vwt B: [168890]
    automated match to d1dxea_
    complexed with gol, mg, po4, pyr
  3. Domain d2vwtc_: 2vwt C: [168891]
    automated match to d1dxea_
    complexed with gol, mg, po4, pyr
Staphylococcus aureus [TaxId:426430] [260815] (2 PDB entries)
1. Domain for 4tv5:
  - Domain d4tv5a_: 4tv5 A: [260819]
    automated match to d3qz6a_
    complexed with ca
2. Domain for 4tv6:
  - Domain d4tv6a_: 4tv6 A: [260816]
    automated match to d3qz6a_
    complexed with oaa
Variovorax sp. [TaxId:218557] [187638] (3 PDB entries)
1. Domain for 2dua:
  - Domain d2duaa_: 2dua A: [163699]
    automated match to d1s2vb_
    complexed with cl, mg, na, oxl, xys
2. Domain for 2hjp:
  - Domain d2hjpa_: 2hjp A: [165131]
    automated match to d1s2vb_
    complexed with cl, mg, na, ppr, xys
3. Domain for 2hrw:
  - Domain d2hrwa_: 2hrw A: [165225]
    automated match to d1s2vb_
    complexed with cl, na
Yersinia pestis [TaxId:632] [256040] (1 PDB entry)
- Domains for 3qll:
  1. Domain d3qlla_: 3qll A: [248928]
    automated match to d1sgja_
  2. Domain d3qllb_: 3qll B: [248929]
    automated match to d1sgja_
  3. Domain d3qllc_: 3qll C: [248930]
    automated match to d1sgja_

More info for Protein automated matches from c.1.12.0: automated matches

Timeline for Protein automated matches from c.1.12.0: automated matches:

Protein automated matches from c.1.12.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from c.1.12.0: automated matches appears in SCOPe 2.04
Protein automated matches from c.1.12.0: automated matches appears in SCOPe 2.06
Protein automated matches from c.1.12.0: automated matches appears in the current release, SCOPe 2.08