Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2088020Superfamily c.1.12: Phosphoenolpyruvate/pyruvate domain [51621] (8 families) (S)
  5. 2088358Family c.1.12.0: automated matches [191427] (1 protein)
    not a true family
  6. 2088359Protein automated matches [190614] (15 species)
    not a true protein

Species:

  1. 2088360Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [226572] (3 PDB entries)
    1. Domains for 3kz2:
      1. 2088363Domain d3kz2a_: 3kz2 A: [305751]
        automated match to d4iqea_
      2. 2088364Domain d3kz2b_: 3kz2 B: [305752]
        automated match to d4iqea_
    2. Domains for 4iqd:
      1. 2088361Domain d4iqda_: 4iqd A: [223308]
        automated match to d3eoob_
        complexed with pyr
      2. 2088362Domain d4iqdb_: 4iqd B: [223309]
        automated match to d3eoob_
        complexed with pyr
    3. Domains for 4iqe:
      1. 2088365Domain d4iqea_: 4iqe A: [223310]
        automated match to d3eoob_
      2. 2088366Domain d4iqeb_: 4iqe B: [223311]
        automated match to d3eoob_
  2. 2088367Aspergillus niger [TaxId:5061] [255825] (2 PDB entries)
    1. Domains for 3fa3:
      1. 2088380Domain d3fa3a_: 3fa3 A: [246044]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      2. 2088381Domain d3fa3b_: 3fa3 B: [246045]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      3. 2088382Domain d3fa3c_: 3fa3 C: [246046]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      4. 2088383Domain d3fa3d_: 3fa3 D: [246047]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      5. 2088384Domain d3fa3e_: 3fa3 E: [246048]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      6. 2088385Domain d3fa3f_: 3fa3 F: [246049]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      7. 2088386Domain d3fa3g_: 3fa3 G: [246050]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      8. 2088387Domain d3fa3h_: 3fa3 H: [246051]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      9. 2088388Domain d3fa3i_: 3fa3 I: [246052]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      10. 2088389Domain d3fa3j_: 3fa3 J: [246053]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      11. 2088390Domain d3fa3k_: 3fa3 K: [246054]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      12. 2088391Domain d3fa3l_: 3fa3 L: [246055]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      13. 2088392Domain d3fa3m_: 3fa3 M: [246056]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      14. 2088393Domain d3fa3n_: 3fa3 N: [246057]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      15. 2088394Domain d3fa3o_: 3fa3 O: [246058]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      16. 2088395Domain d3fa3p_: 3fa3 P: [246059]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
    2. Domains for 3fa4:
      1. 2088368Domain d3fa4a_: 3fa4 A: [246060]
        automated match to d3m0ja_
        complexed with mg
      2. 2088369Domain d3fa4b_: 3fa4 B: [246061]
        automated match to d3m0ja_
        complexed with mg
      3. 2088370Domain d3fa4c_: 3fa4 C: [246062]
        automated match to d3m0ja_
        complexed with mg
      4. 2088371Domain d3fa4d_: 3fa4 D: [246063]
        automated match to d3m0ja_
        complexed with mg
      5. 2088372Domain d3fa4e_: 3fa4 E: [246064]
        automated match to d3m0ja_
        complexed with mg
      6. 2088373Domain d3fa4f_: 3fa4 F: [246065]
        automated match to d3m0ja_
        complexed with mg
      7. 2088374Domain d3fa4g_: 3fa4 G: [246066]
        automated match to d3m0ja_
        complexed with mg
      8. 2088375Domain d3fa4h_: 3fa4 H: [246067]
        automated match to d3m0ja_
        complexed with mg
      9. 2088376Domain d3fa4i_: 3fa4 I: [246068]
        automated match to d3m0ja_
        complexed with mg
      10. 2088377Domain d3fa4j_: 3fa4 J: [246069]
        automated match to d3m0ja_
        complexed with mg
      11. 2088378Domain d3fa4k_: 3fa4 K: [246070]
        automated match to d3m0ja_
        complexed with mg
      12. 2088379Domain d3fa4l_: 3fa4 L: [246071]
        automated match to d3m0ja_
        complexed with mg
  3. 2088396Bacillus anthracis [TaxId:261594] [311297] (1 PDB entry)
  4. 2088399Burkholderia cenocepacia [TaxId:216591] [227802] (1 PDB entry)
  5. 2088406Clove pink (Dianthus caryophyllus) [TaxId:3570] [255010] (1 PDB entry)
  6. 2088409Cryphonectria parasitica [TaxId:5116] [232864] (3 PDB entries)
    1. Domain for 3lye:
    2. Domain for 3m0j:
    3. Domain for 3m0k:
  7. 2088413Desulfitobacterium hafniense [TaxId:272564] [189673] (1 PDB entry)
  8. 2088415Escherichia coli K-12 [TaxId:83333] [188593] (2 PDB entries)
    1. Domains for 2vws:
      1. 2088416Domain d2vwsa_: 2vws A: [168886]
        automated match to d1dxea_
        complexed with gol, po4
      2. 2088417Domain d2vwsb_: 2vws B: [168887]
        automated match to d1dxea_
        complexed with gol, po4
      3. 2088418Domain d2vwsc_: 2vws C: [168888]
        automated match to d1dxea_
        complexed with gol, po4
    2. Domains for 2vwt:
      1. 2088419Domain d2vwta_: 2vwt A: [168889]
        automated match to d1dxea_
        complexed with gol, mg, po4, pyr
      2. 2088420Domain d2vwtb_: 2vwt B: [168890]
        automated match to d1dxea_
        complexed with gol, mg, po4, pyr
      3. 2088421Domain d2vwtc_: 2vwt C: [168891]
        automated match to d1dxea_
        complexed with gol, mg, po4, pyr
  9. 2088422Staphylococcus aureus [TaxId:426430] [260815] (2 PDB entries)
    1. Domain for 4tv5:
    2. Domain for 4tv6:
  10. 2088425Trypanosome (Trypanosoma brucei) [TaxId:5691] [311143] (1 PDB entry)
  11. 2088427Variovorax sp. [TaxId:218557] [187638] (3 PDB entries)
    1. Domain for 2dua:
    2. Domain for 2hjp:
    3. Domain for 2hrw:
  12. 2088431Yersinia pestis [TaxId:632] [256040] (1 PDB entry)
  13. 2286906Streptomyces platensis [TaxId:58346] [330207] (1 PDB entry)
  14. 2289255Flaveria trinervia [TaxId:4227] [332556] (3 PDB entries)
    1. Domains for 5jvj:
      1. 2289256Domain d5jvjb3: 5jvj B:516-874 [332557]
        Other proteins in same PDB: d5jvja1, d5jvja2, d5jvjb1, d5jvjb2
        automated match to d1vbga1
        complexed with mg, pep
      2. 2289524Domain d5jvja3: 5jvj A:516-874 [332825]
        Other proteins in same PDB: d5jvja1, d5jvja2, d5jvjb1, d5jvjb2
        automated match to d1vbga1
        complexed with mg, pep
    2. Domains for 5jvl:
      1. 2289262Domain d5jvla3: 5jvl A:516-874 [332563]
        Other proteins in same PDB: d5jvla1, d5jvla2, d5jvlc1, d5jvlc2, d5jvld1, d5jvld2
        automated match to d1vbga1
        complexed with 6nq, mg, pep
      2. 2289296Domain d5jvld3: 5jvl D:516-874 [332597]
        Other proteins in same PDB: d5jvla1, d5jvla2, d5jvlc1, d5jvlc2, d5jvld1, d5jvld2
        automated match to d1vbga1
        complexed with 6nq, mg, pep
      3. 2289355Domain d5jvlb1: 5jvl B:516-874 [332656]
        Other proteins in same PDB: d5jvla1, d5jvla2, d5jvlc1, d5jvlc2, d5jvld1, d5jvld2
        automated match to d1vbga1
        complexed with 6nq, mg, pep
      4. 2289397Domain d5jvlc3: 5jvl C:516-874 [332698]
        Other proteins in same PDB: d5jvla1, d5jvla2, d5jvlc1, d5jvlc2, d5jvld1, d5jvld2
        automated match to d1vbga1
        complexed with 6nq, mg, pep
    3. Domains for 5lu4:
      1. 2291180Domain d5lu4b3: 5lu4 B:516-872 [334481]
        Other proteins in same PDB: d5lu4a1, d5lu4a2, d5lu4b1, d5lu4b2
        automated match to d1vbga1
        complexed with adp, mg, pyr
      2. 2291189Domain d5lu4a3: 5lu4 A:516-872 [334490]
        Other proteins in same PDB: d5lu4a1, d5lu4a2, d5lu4b1, d5lu4b2
        automated match to d1vbga1
        complexed with adp, mg, pyr
  15. 2289331Flaveria pringlei [TaxId:4226] [332632] (1 PDB entry)

More info for Protein automated matches from c.1.12.0: automated matches

Timeline for Protein automated matches from c.1.12.0: automated matches: