SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2088020Superfamily c.1.12: Phosphoenolpyruvate/pyruvate domain [51621] (8 families) (S)
  5. 2088358Family c.1.12.0: automated matches [191427] (1 protein)
    not a true family
  6. 2088359Protein automated matches [190614] (15 species)
    not a true protein

Species:

  1. 2088360Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [226572] (3 PDB entries)
    1. Domains for 3kz2:
      1. 2088363Domain d3kz2a_: 3kz2 A: [305751]
        automated match to d4iqea_
      2. 2088364Domain d3kz2b_: 3kz2 B: [305752]
        automated match to d4iqea_
    2. Domains for 4iqd:
      1. 2088361Domain d4iqda_: 4iqd A: [223308]
        automated match to d3eoob_
        complexed with pyr
      2. 2088362Domain d4iqdb_: 4iqd B: [223309]
        automated match to d3eoob_
        complexed with pyr
    3. Domains for 4iqe:
      1. 2088365Domain d4iqea_: 4iqe A: [223310]
        automated match to d3eoob_
      2. 2088366Domain d4iqeb_: 4iqe B: [223311]
        automated match to d3eoob_
  2. 2088367Aspergillus niger [TaxId:5061] [255825] (2 PDB entries)
    1. Domains for 3fa3:
      1. 2088380Domain d3fa3a_: 3fa3 A: [246044]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      2. 2088381Domain d3fa3b_: 3fa3 B: [246045]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      3. 2088382Domain d3fa3c_: 3fa3 C: [246046]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      4. 2088383Domain d3fa3d_: 3fa3 D: [246047]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      5. 2088384Domain d3fa3e_: 3fa3 E: [246048]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      6. 2088385Domain d3fa3f_: 3fa3 F: [246049]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      7. 2088386Domain d3fa3g_: 3fa3 G: [246050]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      8. 2088387Domain d3fa3h_: 3fa3 H: [246051]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      9. 2088388Domain d3fa3i_: 3fa3 I: [246052]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      10. 2088389Domain d3fa3j_: 3fa3 J: [246053]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      11. 2088390Domain d3fa3k_: 3fa3 K: [246054]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      12. 2088391Domain d3fa3l_: 3fa3 L: [246055]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      13. 2088392Domain d3fa3m_: 3fa3 M: [246056]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      14. 2088393Domain d3fa3n_: 3fa3 N: [246057]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      15. 2088394Domain d3fa3o_: 3fa3 O: [246058]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
      16. 2088395Domain d3fa3p_: 3fa3 P: [246059]
        automated match to d3m0ja_
        complexed with gol, mn, oaf
    2. Domains for 3fa4:
      1. 2088368Domain d3fa4a_: 3fa4 A: [246060]
        automated match to d3m0ja_
        complexed with mg
      2. 2088369Domain d3fa4b_: 3fa4 B: [246061]
        automated match to d3m0ja_
        complexed with mg
      3. 2088370Domain d3fa4c_: 3fa4 C: [246062]
        automated match to d3m0ja_
        complexed with mg
      4. 2088371Domain d3fa4d_: 3fa4 D: [246063]
        automated match to d3m0ja_
        complexed with mg
      5. 2088372Domain d3fa4e_: 3fa4 E: [246064]
        automated match to d3m0ja_
        complexed with mg
      6. 2088373Domain d3fa4f_: 3fa4 F: [246065]
        automated match to d3m0ja_
        complexed with mg
      7. 2088374Domain d3fa4g_: 3fa4 G: [246066]
        automated match to d3m0ja_
        complexed with mg
      8. 2088375Domain d3fa4h_: 3fa4 H: [246067]
        automated match to d3m0ja_
        complexed with mg
      9. 2088376Domain d3fa4i_: 3fa4 I: [246068]
        automated match to d3m0ja_
        complexed with mg
      10. 2088377Domain d3fa4j_: 3fa4 J: [246069]
        automated match to d3m0ja_
        complexed with mg
      11. 2088378Domain d3fa4k_: 3fa4 K: [246070]
        automated match to d3m0ja_
        complexed with mg
      12. 2088379Domain d3fa4l_: 3fa4 L: [246071]
        automated match to d3m0ja_
        complexed with mg
  3. 2088396Bacillus anthracis [TaxId:261594] [311297] (1 PDB entry)
  4. 2088399Burkholderia cenocepacia [TaxId:216591] [227802] (1 PDB entry)
  5. 2088406Clove pink (Dianthus caryophyllus) [TaxId:3570] [255010] (1 PDB entry)
  6. 2088409Cryphonectria parasitica [TaxId:5116] [232864] (3 PDB entries)
    1. Domain for 3lye:
    2. Domain for 3m0j:
    3. Domain for 3m0k:
  7. 2088413Desulfitobacterium hafniense [TaxId:272564] [189673] (1 PDB entry)
  8. 2088415Escherichia coli K-12 [TaxId:83333] [188593] (2 PDB entries)
    1. Domains for 2vws:
      1. 2088416Domain d2vwsa_: 2vws A: [168886]
        automated match to d1dxea_
        complexed with gol, po4
      2. 2088417Domain d2vwsb_: 2vws B: [168887]
        automated match to d1dxea_
        complexed with gol, po4
      3. 2088418Domain d2vwsc_: 2vws C: [168888]
        automated match to d1dxea_
        complexed with gol, po4
    2. Domains for 2vwt:
      1. 2088419Domain d2vwta_: 2vwt A: [168889]
        automated match to d1dxea_
        complexed with gol, mg, po4, pyr
      2. 2088420Domain d2vwtb_: 2vwt B: [168890]
        automated match to d1dxea_
        complexed with gol, mg, po4, pyr
      3. 2088421Domain d2vwtc_: 2vwt C: [168891]
        automated match to d1dxea_
        complexed with gol, mg, po4, pyr
  9. 2088422Staphylococcus aureus [TaxId:426430] [260815] (2 PDB entries)
    1. Domain for 4tv5:
    2. Domain for 4tv6:
  10. 2088425Trypanosome (Trypanosoma brucei) [TaxId:5691] [311143] (1 PDB entry)
  11. 2088427Variovorax sp. [TaxId:218557] [187638] (3 PDB entries)
    1. Domain for 2dua:
    2. Domain for 2hjp:
    3. Domain for 2hrw:
  12. 2088431Yersinia pestis [TaxId:632] [256040] (1 PDB entry)
  13. 2286906Streptomyces platensis [TaxId:58346] [330207] (1 PDB entry)
  14. 2289255Flaveria trinervia [TaxId:4227] [332556] (3 PDB entries)
    1. Domains for 5jvj:
      1. 2289256Domain d5jvjb3: 5jvj B:516-874 [332557]
        Other proteins in same PDB: d5jvja1, d5jvja2, d5jvjb1, d5jvjb2
        automated match to d1vbga1
        complexed with mg, pep
      2. 2289524Domain d5jvja3: 5jvj A:516-874 [332825]
        Other proteins in same PDB: d5jvja1, d5jvja2, d5jvjb1, d5jvjb2
        automated match to d1vbga1
        complexed with mg, pep
    2. Domains for 5jvl:
      1. 2289262Domain d5jvla3: 5jvl A:516-874 [332563]
        Other proteins in same PDB: d5jvla1, d5jvla2, d5jvlc1, d5jvlc2, d5jvld1, d5jvld2
        automated match to d1vbga1
        complexed with 6nq, mg, pep
      2. 2289296Domain d5jvld3: 5jvl D:516-874 [332597]
        Other proteins in same PDB: d5jvla1, d5jvla2, d5jvlc1, d5jvlc2, d5jvld1, d5jvld2
        automated match to d1vbga1
        complexed with 6nq, mg, pep
      3. 2289355Domain d5jvlb1: 5jvl B:516-874 [332656]
        Other proteins in same PDB: d5jvla1, d5jvla2, d5jvlc1, d5jvlc2, d5jvld1, d5jvld2
        automated match to d1vbga1
        complexed with 6nq, mg, pep
      4. 2289397Domain d5jvlc3: 5jvl C:516-874 [332698]
        Other proteins in same PDB: d5jvla1, d5jvla2, d5jvlc1, d5jvlc2, d5jvld1, d5jvld2
        automated match to d1vbga1
        complexed with 6nq, mg, pep
    3. Domains for 5lu4:
      1. 2291180Domain d5lu4b3: 5lu4 B:516-872 [334481]
        Other proteins in same PDB: d5lu4a1, d5lu4a2, d5lu4b1, d5lu4b2
        automated match to d1vbga1
        complexed with adp, mg, pyr
      2. 2291189Domain d5lu4a3: 5lu4 A:516-872 [334490]
        Other proteins in same PDB: d5lu4a1, d5lu4a2, d5lu4b1, d5lu4b2
        automated match to d1vbga1
        complexed with adp, mg, pyr
  15. 2289331Flaveria pringlei [TaxId:4226] [332632] (1 PDB entry)

More info for Protein automated matches from c.1.12.0: automated matches

Timeline for Protein automated matches from c.1.12.0: automated matches: