Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2138632Fold c.77: Isocitrate/Isopropylmalate dehydrogenase-like [53658] (1 superfamily)
    consists of two intertwined (sub)domains related by pseudo dyad; duplication
    3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest
  4. 2138633Superfamily c.77.1: Isocitrate/Isopropylmalate dehydrogenase-like [53659] (6 families) (S)
    the constituent families form similar dimers
  5. 2138965Family c.77.1.0: automated matches [191423] (1 protein)
    not a true family
  6. 2138966Protein automated matches [190603] (16 species)
    not a true protein

Species:

  1. 2138967Aeropyrum pernix [TaxId:272557] [188121] (1 PDB entry)
  2. 2138970Aeropyrum pernix [TaxId:56636] [188025] (3 PDB entries)
    1. Domains for 1tyo:
      1. 2138971Domain d1tyoa_: 1tyo A: [161789]
        automated match to d1hqsa_
        complexed with enp
      2. 2138972Domain d1tyob_: 1tyo B: [161790]
        automated match to d1hqsa_
        complexed with enp
    2. Domains for 1v94:
      1. 2138973Domain d1v94a_: 1v94 A: [161837]
        automated match to d1hqsa_
      2. 2138974Domain d1v94b_: 1v94 B: [161838]
        automated match to d1hqsa_
    3. Domains for 1xgv:
      1. 2138975Domain d1xgva_: 1xgv A: [162074]
        automated match to d1hqsa_
      2. 2138976Domain d1xgvb_: 1xgv B: [162075]
        automated match to d1hqsa_
  3. 2138977Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188333] (1 PDB entry)
  4. 2138994Burkholderia thailandensis [TaxId:271848] [269591] (1 PDB entry)
  5. 2138997Burkholderia xenovorans [TaxId:266265] [194800] (1 PDB entry)
  6. 2138999Clostridium thermocellum [TaxId:1515] [192994] (2 PDB entries)
    1. Domain for 4aou:
    2. Domains for 4aoy:
      1. 2139000Domain d4aoya_: 4aoy A: [192997]
        automated match to d2uxqa_
      2. 2139001Domain d4aoyb_: 4aoy B: [193001]
        automated match to d2uxqa_
      3. 2139002Domain d4aoyc_: 4aoy C: [192999]
        automated match to d2uxqa_
      4. 2139003Domain d4aoyd_: 4aoy D: [193004]
        automated match to d2uxqa_
  7. 2139005Desulfotalea psychrophila [TaxId:84980] [188344] (3 PDB entries)
    1. Domains for 2uxq:
      1. 2139006Domain d2uxqa_: 2uxq A: [168214]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
      2. 2139007Domain d2uxqb_: 2uxq B: [168215]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
      3. 2139008Domain d2uxqc_: 2uxq C: [168216]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
      4. 2139009Domain d2uxqd_: 2uxq D: [168217]
        automated match to d1lwda_
        complexed with gol, mg, peg, so4
    2. Domains for 2uxr:
      1. 2139011Domain d2uxra_: 2uxr A: [168218]
        automated match to d1lwda_
        complexed with gol, ict, mg
      2. 2139012Domain d2uxrb_: 2uxr B: [168219]
        automated match to d1lwda_
        complexed with gol, ict, mg
    3. Domain for 4aov:
  8. 2139013Pseudomonas putida [TaxId:303] [225791] (2 PDB entries)
    1. Domains for 3flk:
      1. 2139014Domain d3flka_: 3flk A: [210005]
        automated match to d3udua_
        complexed with dtt, mg, nai, nh4, oxl, so4
      2. 2139015Domain d3flkb_: 3flk B: [210006]
        automated match to d3udua_
        complexed with dtt, mg, nai, nh4, oxl, so4
      3. 2139016Domain d3flkc_: 3flk C: [210007]
        automated match to d3udua_
        complexed with dtt, mg, nai, nh4, oxl, so4
      4. 2139017Domain d3flkd_: 3flk D: [210008]
        automated match to d3udua_
        complexed with dtt, mg, nai, nh4, oxl, so4
    2. Domain for 3fmx:
  9. 2139019Salmonella typhimurium [TaxId:99287] [187811] (1 PDB entry)
  10. 2139022Schizosaccharomyces pombe [TaxId:284812] [189802] (2 PDB entries)
    1. Domains for 3ty3:
      1. 2139025Domain d3ty3a_: 3ty3 A: [186003]
        automated match to d1wpwa_
        complexed with ggg, gol
      2. 2139026Domain d3ty3b_: 3ty3 B: [186004]
        automated match to d1wpwa_
        complexed with ggg, gol
    2. Domains for 3ty4:
      1. 2139023Domain d3ty4a_: 3ty4 A: [186005]
        automated match to d1wpwa_
        complexed with gol
      2. 2139024Domain d3ty4b_: 3ty4 B: [186006]
        automated match to d1wpwa_
        complexed with gol
  11. 2139027Sulfolobus tokodaii [TaxId:273063] [187622] (3 PDB entries)
    1. Domains for 2dht:
      1. 2139032Domain d2dhta_: 2dht A: [163638]
        automated match to d1ai2a_
      2. 2139033Domain d2dhtb_: 2dht B: [163639]
        automated match to d1ai2a_
    2. Domains for 2e0c:
      1. 2139028Domain d2e0ca_: 2e0c A: [163781]
        automated match to d1ai2a_
      2. 2139029Domain d2e0cb_: 2e0c B: [163782]
        automated match to d1ai2a_
    3. Domains for 2e5m:
      1. 2139030Domain d2e5ma_: 2e5m A: [163834]
        automated match to d1ai2a_
        complexed with nap
      2. 2139031Domain d2e5mb_: 2e5m B: [163835]
        automated match to d1ai2a_
        complexed with nap
  12. 2139034Thermotoga maritima [TaxId:243274] [188199] (1 PDB entry)
  13. 2139037Thermus thermophilus [TaxId:262724] [189625] (2 PDB entries)
    1. Domains for 3ah3:
      1. 2139038Domain d3ah3a_: 3ah3 A: [172162]
        automated match to d1wpwa_
        complexed with edo, so4
      2. 2139039Domain d3ah3b_: 3ah3 B: [172163]
        automated match to d1wpwa_
        complexed with edo, so4
      3. 2139040Domain d3ah3c_: 3ah3 C: [172164]
        automated match to d1wpwa_
        complexed with edo, so4
      4. 2139041Domain d3ah3d_: 3ah3 D: [172165]
        automated match to d1wpwa_
        complexed with edo, so4
    2. Domains for 4yb4:
      1. 2268621Domain d4yb4c_: 4yb4 C: [311927]
        automated match to d1x0la_
        complexed with 48y, gol, mg, nai, so4
      2. 2268720Domain d4yb4d_: 4yb4 D: [312026]
        automated match to d1x0la_
        complexed with 48y, gol, mg, nai, so4
      3. 2268735Domain d4yb4b_: 4yb4 B: [312041]
        automated match to d1x0la_
        complexed with 48y, gol, mg, nai, so4
      4. 2268987Domain d4yb4a_: 4yb4 A: [312293]
        automated match to d1x0la_
        complexed with 48y, gol, mg, nai, so4
  14. 2139042Thermus thermophilus [TaxId:274] [188105] (1 PDB entry)
  15. 2283636Thermococcus kodakarensis [TaxId:69014] [326937] (4 PDB entries)
    1. Domain for 5hn3:
    2. Domain for 5hn4:
    3. Domain for 5hn5:
    4. Domain for 5hn6:
  16. 2286420Homo sapiens [TaxId:9606] [329721] (5 PDB entries)
    1. Domains for 5gre:
      1. 2286469Domain d5greb_: 5gre B: [329770]
        automated match to d3blxc_
        complexed with adp, cit, mg
      2. 2286496Domain d5grea_: 5gre A: [329797]
        automated match to d3blxo_
        complexed with adp, cit, mg
    2. Domains for 5grf:
      1. 2286428Domain d5grfb_: 5grf B: [329729]
        automated match to d3blxc_
        complexed with adp, cit, mg; mutant
      2. 2286510Domain d5grfa_: 5grf A: [329811]
        automated match to d3blxo_
        complexed with adp, cit, mg; mutant
    3. Domains for 5grh:
      1. 2286421Domain d5grha_: 5grh A: [329722]
        automated match to d3blxo_
        complexed with mg
      2. 2286475Domain d5grhb_: 5grh B: [329776]
        automated match to d3blxc_
        complexed with mg
    4. Domains for 5gri:
      1. 2286449Domain d5grib_: 5gri B: [329750]
        automated match to d3blxc_
        complexed with cit, mg
      2. 2286458Domain d5gria_: 5gri A: [329759]
        automated match to d3blxo_
        complexed with cit, mg
    5. Domains for 5grl:
      1. 2286477Domain d5grla_: 5grl A: [329778]
        automated match to d3blxo_
        complexed with adp, ict, mg
      2. 2286642Domain d5grlb_: 5grl B: [329943]
        automated match to d3blxc_
        complexed with adp, ict, mg

More info for Protein automated matches from c.77.1.0: automated matches

Timeline for Protein automated matches from c.77.1.0: automated matches: