SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2105373Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
    core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
  4. 2105374Superfamily c.26.1: Nucleotidylyl transferase [52374] (6 families) (S)
  5. 2105375Family c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain [52375] (13 protein domains)
    contains a conserved all-alpha subdomain at the C-terminal extension
  6. 2105607Protein automated matches [190581] (9 species)
    not a true protein

Species:

  1. 2105608Archaeoglobus fulgidus [TaxId:2234] [187585] (1 PDB entry)
  2. 2105611Escherichia coli [TaxId:562] [188048] (3 PDB entries)
    1. Domains for 1vbm:
      1. 2105615Domain d1vbma_: 1vbm A: [161842]
        automated match to d1tyae_
        protein/RNA complex; complexed with so4, ysa
      2. 2105616Domain d1vbmb_: 1vbm B: [161843]
        automated match to d1tyae_
        protein/RNA complex; complexed with so4, ysa
    2. Domains for 1vbn:
      1. 2105613Domain d1vbna_: 1vbn A: [161844]
        automated match to d1tyae_
        protein/RNA complex; complexed with ysa; mutant
      2. 2105614Domain d1vbnb_: 1vbn B: [161845]
        automated match to d1tyae_
        protein/RNA complex; complexed with ysa; mutant
    3. Domain for 1x8x:
  3. 2105617Methanocaldococcus jannaschii [TaxId:2190] [188187] (8 PDB entries)
    1. Domain for 1zh0:
    2. Domain for 2pxh:
    3. Domain for 2zp1:
    4. Domain for 3d6u:
    5. Domain for 3d6v:
    6. Domain for 4hk4:
    7. Domain for 4hpw:
    8. Domain for 4nx2:
  4. 2105626Methanocaldococcus jannaschii [TaxId:243232] [193079] (8 PDB entries)
    1. Domains for 4hjr:
      1. 2105633Domain d4hjra1: 4hjr A:1-306 [193081]
        Other proteins in same PDB: d4hjra2
        automated match to d2pxha_
      2. 2105634Domain d4hjrb_: 4hjr B: [193080]
        Other proteins in same PDB: d4hjra2
        automated match to d2pxha_
    2. Domains for 4hjx:
      1. 2105635Domain d4hjxa_: 4hjx A: [222644]
        automated match to d4hjrb_
        protein/RNA complex; complexed with f2y
      2. 2105636Domain d4hjxb_: 4hjx B: [222645]
        automated match to d4hjrb_
        protein/RNA complex; complexed with f2y
    3. Domain for 4nd6:
    4. Domain for 4nd7:
    5. Domain for 4nda:
    6. Domain for 4pbr:
    7. Domain for 4pbs:
    8. Domain for 4pbt:
  5. 2105637Thermus thermophilus HB8 [TaxId:300852] [233866] (1 PDB entry)
  6. 2105639Thermus thermophilus [TaxId:274] [254946] (3 PDB entries)
    1. Domain for 1woy:
    2. Domain for 2d54:
    3. Domain for 2d5b:
  7. 2105643Vibrio cholerae [TaxId:243277] [196171] (1 PDB entry)
  8. 2105645Yersinia pestis [TaxId:214092] [189402] (1 PDB entry)
  9. 2288952Escherichia coli [TaxId:155864] [332253] (1 PDB entry)

More info for Protein automated matches from c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain

Timeline for Protein automated matches from c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain:

  • Protein automated matches from c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain first appeared in SCOPe 2.01
  • Protein automated matches from c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain appears in SCOPe 2.05