Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2105373Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
    core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
  4. 2105374Superfamily c.26.1: Nucleotidylyl transferase [52374] (6 families) (S)
  5. 2105375Family c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain [52375] (13 protein domains)
    contains a conserved all-alpha subdomain at the C-terminal extension
  6. 2105607Protein automated matches [190581] (9 species)
    not a true protein

Species:

  1. 2105608Archaeoglobus fulgidus [TaxId:2234] [187585] (1 PDB entry)
  2. 2105611Escherichia coli [TaxId:562] [188048] (3 PDB entries)
    1. Domains for 1vbm:
      1. 2105615Domain d1vbma_: 1vbm A: [161842]
        automated match to d1tyae_
        protein/RNA complex; complexed with so4, ysa
      2. 2105616Domain d1vbmb_: 1vbm B: [161843]
        automated match to d1tyae_
        protein/RNA complex; complexed with so4, ysa
    2. Domains for 1vbn:
      1. 2105613Domain d1vbna_: 1vbn A: [161844]
        automated match to d1tyae_
        protein/RNA complex; complexed with ysa; mutant
      2. 2105614Domain d1vbnb_: 1vbn B: [161845]
        automated match to d1tyae_
        protein/RNA complex; complexed with ysa; mutant
    3. Domain for 1x8x:
  3. 2105617Methanocaldococcus jannaschii [TaxId:2190] [188187] (8 PDB entries)
    1. Domain for 1zh0:
    2. Domain for 2pxh:
    3. Domain for 2zp1:
    4. Domain for 3d6u:
    5. Domain for 3d6v:
    6. Domain for 4hk4:
    7. Domain for 4hpw:
    8. Domain for 4nx2:
  4. 2105626Methanocaldococcus jannaschii [TaxId:243232] [193079] (10 PDB entries)
    1. Domains for 4hjr:
      1. 2105633Domain d4hjra1: 4hjr A:1-306 [193081]
        Other proteins in same PDB: d4hjra2
        automated match to d2pxha_
      2. 2105634Domain d4hjrb_: 4hjr B: [193080]
        Other proteins in same PDB: d4hjra2
        automated match to d2pxha_
    2. Domains for 4hjx:
      1. 2105635Domain d4hjxa_: 4hjx A: [222644]
        automated match to d4hjrb_
        protein/RNA complex; complexed with f2y
      2. 2105636Domain d4hjxb_: 4hjx B: [222645]
        automated match to d4hjrb_
        protein/RNA complex; complexed with f2y
    3. Domain for 4nd6:
    4. Domain for 4nd7:
    5. Domain for 4nda:
    6. Domain for 4pbr:
    7. Domain for 4pbs:
    8. Domain for 4pbt:
    9. Domains for 5l7p:
      1. 2295600Domain d5l7pb_: 5l7p B: [338901]
        automated match to d4nd6a_
        complexed with 1pe, buu, ca, cl
      2. 2295601Domain d5l7pa_: 5l7p A: [338902]
        automated match to d4nd6a_
        complexed with 1pe, buu, ca, cl
    10. Domains for 5u36:
      1. 2291834Domain d5u36a1: 5u36 A:2-306 [335135]
        Other proteins in same PDB: d5u36a2, d5u36b2
        automated match to d1u7xa_
        mutant
      2. 2291850Domain d5u36b1: 5u36 B:2-306 [335151]
        Other proteins in same PDB: d5u36a2, d5u36b2
        automated match to d1u7xa_
        mutant
  5. 2105637Thermus thermophilus HB8 [TaxId:300852] [233866] (1 PDB entry)
  6. 2105639Thermus thermophilus [TaxId:274] [254946] (3 PDB entries)
    1. Domain for 1woy:
    2. Domain for 2d54:
    3. Domain for 2d5b:
  7. 2105643Vibrio cholerae [TaxId:243277] [196171] (1 PDB entry)
  8. 2105645Yersinia pestis [TaxId:214092] [189402] (1 PDB entry)
  9. 2288952Escherichia coli [TaxId:155864] [332253] (1 PDB entry)

More info for Protein automated matches from c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain

Timeline for Protein automated matches from c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain:

  • Protein automated matches from c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain first appeared in SCOPe 2.01
  • Protein automated matches from c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain appears in SCOPe 2.05