Class b: All beta proteins [48724] (174 folds) |
Fold b.40: OB-fold [50198] (16 superfamilies) barrel, closed or partly opened n=5, S=10 or S=8; greek-key |
Superfamily b.40.4: Nucleic acid-binding proteins [50249] (17 families) |
Family b.40.4.0: automated matches [191416] (1 protein) not a true family |
Protein automated matches [190576] (18 species) not a true protein |
Agrobacterium tumefaciens [TaxId:176299] [188408] (2 PDB entries) |
Domain d2q2ha_: 2q2h A: [198268] automated match to d2q2hb_ complexed with act, cit |
Domain d2q2hb_: 2q2h B: [195196] automated match to d2q2ia_ complexed with act, cit |
Domain d2q2ia_: 2q2i A: [167395] automated match to d1gd7a_ complexed with edo, so4 |
Domain d2q2ib_: 2q2i B: [167396] automated match to d1gd7a_ complexed with edo, so4 |
Bacillus stearothermophilus [TaxId:1422] [225706] (2 PDB entries) |
Domain d3e9ha1: 3e9h A:4-145 [209425] Other proteins in same PDB: d3e9ha2, d3e9hb2, d3e9hc2, d3e9hd2 automated match to d1bbua1 protein/RNA complex; complexed with kaa, mg |
Domain d3e9hb1: 3e9h B:4-145 [209427] Other proteins in same PDB: d3e9ha2, d3e9hb2, d3e9hc2, d3e9hd2 automated match to d1bbua1 protein/RNA complex; complexed with kaa, mg |
Domain d3e9hc1: 3e9h C:4-145 [209429] Other proteins in same PDB: d3e9ha2, d3e9hb2, d3e9hc2, d3e9hd2 automated match to d1bbua1 protein/RNA complex; complexed with kaa, mg |
Domain d3e9hd1: 3e9h D:4-145 [209431] Other proteins in same PDB: d3e9ha2, d3e9hb2, d3e9hc2, d3e9hd2 automated match to d1bbua1 protein/RNA complex; complexed with kaa, mg |
Domain d3e9ia1: 3e9i A:4-145 [209433] Other proteins in same PDB: d3e9ia2, d3e9ib2, d3e9ic2, d3e9id2 automated match to d1bbua1 protein/RNA complex; complexed with 1pe, mg, xah |
Domain d3e9ib1: 3e9i B:4-145 [209435] Other proteins in same PDB: d3e9ia2, d3e9ib2, d3e9ic2, d3e9id2 automated match to d1bbua1 protein/RNA complex; complexed with 1pe, mg, xah |
Domain d3e9ic1: 3e9i C:4-145 [209437] Other proteins in same PDB: d3e9ia2, d3e9ib2, d3e9ic2, d3e9id2 automated match to d1bbua1 protein/RNA complex; complexed with 1pe, mg, xah |
Domain d3e9id1: 3e9i D:4-145 [209439] Other proteins in same PDB: d3e9ia2, d3e9ib2, d3e9ic2, d3e9id2 automated match to d1bbua1 protein/RNA complex; complexed with 1pe, mg, xah |
Bacillus subtilis [TaxId:1423] [187937] (2 PDB entries) |
Domain d2nzha_: 2nzh A: [166469] automated match to d1gd7a_ complexed with gol |
Domain d2nzhb_: 2nzh B: [166470] automated match to d1gd7a_ complexed with gol |
Domain d2nzoa_: 2nzo A: [166476] automated match to d1gd7a_ complexed with gol |
Domain d2nzob_: 2nzo B: [166477] automated match to d1gd7a_ complexed with gol |
Domain d2nzoc_: 2nzo C: [166478] automated match to d1gd7a_ complexed with gol |
Domain d2nzod_: 2nzo D: [166479] automated match to d1gd7a_ complexed with gol |
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [225013] (2 PDB entries) |
Coxiella burnetii [TaxId:777] [233711] (1 PDB entry) |
Domain d3trea2: 3tre A:66-131 [233712] Other proteins in same PDB: d3trea1 automated match to d1ueba2 |
Helicobacter pylori [TaxId:85962] [225690] (1 PDB entry) |
Domain d2vw9a_: 2vw9 A: [206500] automated match to d1s3ob_ protein/DNA complex |
Domain d2vw9b_: 2vw9 B: [206501] automated match to d1s3ob_ protein/DNA complex |
Human (Homo sapiens) [TaxId:9606] [225402] (5 PDB entries) |
Domain d3bjua1: 3bju A:70-221 [208647] Other proteins in same PDB: d3bjua2, d3bjub2, d3bjuc2, d3bjud2 automated match to d1bbua1 complexed with atp, ca, lys |
Domain d3bjub1: 3bju B:72-214 [208649] Other proteins in same PDB: d3bjua2, d3bjub2, d3bjuc2, d3bjud2 automated match to d1bbua1 complexed with atp, ca, lys |
Domain d3bjuc1: 3bju C:72-221 [208651] Other proteins in same PDB: d3bjua2, d3bjub2, d3bjuc2, d3bjud2 automated match to d1bbua1 complexed with atp, ca, lys |
Domain d3bjud1: 3bju D:71-221 [208653] Other proteins in same PDB: d3bjua2, d3bjub2, d3bjuc2, d3bjud2 automated match to d1bbua1 complexed with atp, ca, lys |
Domain d3cpfa2: 3cpf A:84-150 [231890] Other proteins in same PDB: d3cpfa1, d3cpfb1 automated match to d3hksa2 complexed with unx |
Domain d3cpfb2: 3cpf B:84-151 [231892] Other proteins in same PDB: d3cpfa1, d3cpfb1 automated match to d3hksa2 complexed with unx |
Domain d4a4ia_: 4a4i A: [234027] automated match to d3i2za_ complexed with gol, so4 |
Domain d4a4ib_: 4a4i B: [234028] automated match to d3i2za_ complexed with gol, so4 |
Domain d4dpga1: 4dpg A:71-221 [219905] Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2 automated match to d1bbua1 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4dpgb1: 4dpg B:71-221 [219907] Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2 automated match to d1bbua1 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4dpgc1: 4dpg C:71-221 [219909] Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2 automated match to d1bbua1 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4dpgd1: 4dpg D:71-221 [219911] Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2 automated match to d1bbua1 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4dpge1: 4dpg E:72-221 [219913] Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2 automated match to d1bbua1 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4dpgf1: 4dpg F:71-221 [219915] Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2 automated match to d1bbua1 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4dpgg1: 4dpg G:72-221 [219917] Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2 automated match to d1bbua1 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4dpgh1: 4dpg H:71-221 [219919] Other proteins in same PDB: d4dpga2, d4dpgb2, d4dpgc2, d4dpgd2, d4dpge2, d4dpgf2, d4dpgg2, d4dpgh2 automated match to d1bbua1 protein/RNA complex; complexed with ala, apc, lys, mg |
Domain d4j15a1: 4j15 A:21-152 [223509] Other proteins in same PDB: d4j15a2, d4j15b2 automated match to d1asza1 protein/RNA complex; complexed with gol |
Domain d4j15b1: 4j15 B:21-152 [223511] Other proteins in same PDB: d4j15a2, d4j15b2 automated match to d1asza1 protein/RNA complex; complexed with gol |
Domain d4h02a1: 4h02 A:80-228 [234565] Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2 automated match to d3bjua1 |
Domain d4h02b1: 4h02 B:80-228 [234566] Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2 automated match to d3bjua1 |
Domain d4h02c1: 4h02 C:80-228 [234570] Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2 automated match to d3bjua1 |
Domain d4h02d1: 4h02 D:80-228 [234571] Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2 automated match to d3bjua1 |
Domain d4h02e1: 4h02 E:80-228 [234572] Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2 automated match to d3bjua1 |
Domain d4h02f1: 4h02 F:80-228 [234574] Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2 automated match to d3bjua1 |
Domain d4h02g1: 4h02 G:80-228 [234573] Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2 automated match to d3bjua1 |
Domain d4h02h1: 4h02 H:80-228 [234575] Other proteins in same PDB: d4h02a2, d4h02b2, d4h02c2, d4h02d2, d4h02e2, d4h02f2, d4h02g2, d4h02h2 automated match to d3bjua1 |
Pyrococcus furiosus [TaxId:186497] [238494] (1 PDB entry) |
Domain d4pofa_: 4pof A: [238496] automated match to d2vl6a_ complexed with zn |
Domain d4pofb_: 4pof B: [238497] automated match to d2vl6a_ complexed with zn |
Pyrococcus horikoshii [TaxId:53953] [187575] (4 PDB entries) |
Domain d1x54a1: 1x54 A:1-104 [230394] Other proteins in same PDB: d1x54a2 automated match to d1b8aa1 protein/RNA complex; complexed with 4ad, mg, mpd |
Domain d1x55a1: 1x55 A:1-104 [230397] Other proteins in same PDB: d1x55a2 automated match to d1b8aa1 protein/RNA complex; complexed with mg, nss, po4 |
Domain d1x56a1: 1x56 A:1-104 [230399] Other proteins in same PDB: d1x56a2 automated match to d1b8aa1 |
Domain d2cwpa_: 2cwp A: [163483] automated match to d1pyba_ |
Streptomyces coelicolor [TaxId:1902] [196757] (1 PDB entry) |
Domain d4dama_: 4dam A: [196758] automated match to d3a5ua_ |
Domain d4damb_: 4dam B: [196759] automated match to d3a5ua_ |
Domain d4damc_: 4dam C: [196760] automated match to d3a5ua_ |
Domain d4damd_: 4dam D: [196762] automated match to d3a5ua_ |
Domain d4dame_: 4dam E: [196761] automated match to d3a5ua_ |
Domain d4damf_: 4dam F: [201654] automated match to d4dama_ |
Domain d4damg_: 4dam G: [201655] automated match to d4dama_ |
Domain d4damh_: 4dam H: [201656] automated match to d4dama_ |
Domain d4dami_: 4dam I: [201657] automated match to d4dama_ |
Domain d4damj_: 4dam J: [201658] automated match to d4dama_ |
Domain d4damk_: 4dam K: [201659] automated match to d4dama_ |
Domain d4daml_: 4dam L: [201660] automated match to d4dama_ |
Sulfolobus solfataricus [TaxId:2287] [188424] (1 PDB entry) |
Domain d2vl6a_: 2vl6 A: [168676] automated match to d1ltle_ complexed with zn |
Domain d2vl6b_: 2vl6 B: [168677] automated match to d1ltle_ complexed with zn |
Domain d2vl6c_: 2vl6 C: [168678] automated match to d1ltle_ complexed with zn |
Sulfolobus tokodaii [TaxId:273063] [230388] (1 PDB entry) |
Domain d1wyda1: 1wyd A:1-100 [230389] Other proteins in same PDB: d1wyda2, d1wydb2 automated match to d1b8aa1 complexed with cl, epe, so4 |
Domain d1wydb1: 1wyd B:1-100 [230392] Other proteins in same PDB: d1wyda2, d1wydb2 automated match to d1b8aa1 complexed with cl, epe, so4 |
Thale cress (Arabidopsis thaliana) [TaxId:3702] [225760] (1 PDB entry) |
Domain d3hksa2: 3hks A:85-159 [211116] Other proteins in same PDB: d3hksa1, d3hksb1 automated match to d1xtda2 complexed with edo |
Domain d3hksb2: 3hks B:85-157 [211118] Other proteins in same PDB: d3hksa1, d3hksb1 automated match to d1xtda2 complexed with edo |
Thermococcus kodakarensis [TaxId:311400] [225945] (3 PDB entries) |
Domain d3nela1: 3nel A:1-102 [213895] Other proteins in same PDB: d3nela2, d3nelb2 automated match to d1c0aa1 protein/RNA complex; complexed with asp |
Domain d3nelb1: 3nel B:1-102 [213897] Other proteins in same PDB: d3nela2, d3nelb2 automated match to d1c0aa1 protein/RNA complex; complexed with asp |
Domain d3nema1: 3nem A:1-102 [213899] Other proteins in same PDB: d3nema2, d3nemb2 automated match to d1c0aa1 protein/RNA complex; complexed with amo, atp, mg |
Domain d3nemb1: 3nem B:1-102 [213901] Other proteins in same PDB: d3nema2, d3nemb2 automated match to d1c0aa1 protein/RNA complex; complexed with amo, atp, mg |
Domain d3nena1: 3nen A:1-102 [213903] Other proteins in same PDB: d3nena2, d3nenb2 automated match to d1c0aa1 |
Domain d3nenb1: 3nen B:1-102 [213905] Other proteins in same PDB: d3nena2, d3nenb2 automated match to d1c0aa1 |
Thermotoga maritima [TaxId:2336] [225895] (1 PDB entry) |
Domain d3l0ob1: 3l0o B:58-130 [212639] Other proteins in same PDB: d3l0ob2 automated match to d1xpoa2 complexed with ium, na, so4 |
Thermus aquaticus [TaxId:271] [187860] (3 PDB entries) |
Domain d2fxqa_: 2fxq A: [204272] automated match to d2ihea_ |
Domain d2ihea_: 2ihe A: [193209] automated match to d2ihfa_ |
Domain d2ihfa_: 2ihf A: [165548] automated match to d1se8a_ mutant |
Thermus thermophilus [TaxId:300852] [230627] (1 PDB entry) |
Domain d2cwaa_: 2cwa A: [230628] automated match to d2ihea_ complexed with no3 |
Timeline for Protein automated matches from b.40.4.0: automated matches: